Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2959 and Echvi_2960 are separated by 122 nucleotides Echvi_2960 and Echvi_2961 are separated by 615 nucleotides Echvi_2961 and Echvi_2962 overlap by 4 nucleotides
Echvi_2959: Echvi_2959 - hypothetical protein, at 3,536,873 to 3,537,019
_2959
Echvi_2960: Echvi_2960 - hypothetical protein, at 3,537,142 to 3,537,339
_2960
Echvi_2961: Echvi_2961 - hypothetical protein, at 3,537,955 to 3,538,047
_2961
Echvi_2962: Echvi_2962 - Undecaprenyl-phosphate glucose phosphotransferase, at 3,538,044 to 3,539,429
_2962
Position (kb)
3537
3538
3539 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3536.962 kb on + strand, within Echvi_2959 at 3536.963 kb on - strand, within Echvi_2959 at 3537.019 kb on + strand at 3537.019 kb on + strand at 3537.062 kb on - strand at 3537.139 kb on + strand at 3537.139 kb on + strand at 3537.139 kb on + strand at 3537.248 kb on + strand, within Echvi_2960 at 3537.314 kb on + strand, within Echvi_2960 at 3537.315 kb on - strand, within Echvi_2960 at 3537.315 kb on - strand, within Echvi_2960 at 3537.317 kb on + strand, within Echvi_2960 at 3537.317 kb on + strand, within Echvi_2960 at 3537.318 kb on - strand, within Echvi_2960 at 3537.318 kb on - strand, within Echvi_2960 at 3537.353 kb on + strand at 3537.353 kb on + strand at 3537.363 kb on + strand at 3537.384 kb on - strand at 3537.461 kb on + strand at 3537.620 kb on + strand at 3537.621 kb on - strand at 3537.697 kb on - strand at 3537.863 kb on - strand at 3537.934 kb on - strand at 3537.997 kb on - strand, within Echvi_2961 at 3537.997 kb on - strand, within Echvi_2961 at 3538.000 kb on - strand, within Echvi_2961 at 3538.052 kb on + strand at 3538.052 kb on + strand at 3538.053 kb on - strand at 3538.109 kb on + strand at 3538.129 kb on - strand at 3538.130 kb on + strand at 3538.130 kb on + strand at 3538.143 kb on - strand at 3538.191 kb on - strand, within Echvi_2962 at 3538.201 kb on + strand, within Echvi_2962 at 3538.223 kb on - strand, within Echvi_2962 at 3538.223 kb on - strand, within Echvi_2962 at 3538.225 kb on - strand, within Echvi_2962 at 3538.265 kb on - strand, within Echvi_2962 at 3538.274 kb on - strand, within Echvi_2962 at 3538.314 kb on + strand, within Echvi_2962 at 3538.318 kb on + strand, within Echvi_2962 at 3538.319 kb on - strand, within Echvi_2962 at 3538.394 kb on - strand, within Echvi_2962 at 3538.411 kb on + strand, within Echvi_2962 at 3538.411 kb on + strand, within Echvi_2962 at 3538.411 kb on + strand, within Echvi_2962 at 3538.412 kb on - strand, within Echvi_2962 at 3538.412 kb on - strand, within Echvi_2962 at 3538.412 kb on - strand, within Echvi_2962 at 3538.412 kb on - strand, within Echvi_2962 at 3538.416 kb on - strand, within Echvi_2962 at 3538.421 kb on + strand, within Echvi_2962 at 3538.421 kb on + strand, within Echvi_2962 at 3538.422 kb on - strand, within Echvi_2962 at 3538.555 kb on - strand, within Echvi_2962 at 3538.586 kb on - strand, within Echvi_2962 at 3538.629 kb on + strand, within Echvi_2962 at 3538.629 kb on + strand, within Echvi_2962 at 3538.630 kb on - strand, within Echvi_2962 at 3538.633 kb on + strand, within Echvi_2962 at 3538.634 kb on - strand, within Echvi_2962 at 3538.649 kb on - strand, within Echvi_2962 at 3538.659 kb on - strand, within Echvi_2962 at 3538.660 kb on + strand, within Echvi_2962 at 3538.664 kb on - strand, within Echvi_2962 at 3538.664 kb on - strand, within Echvi_2962 at 3538.810 kb on + strand, within Echvi_2962 at 3538.810 kb on + strand, within Echvi_2962 at 3538.811 kb on - strand, within Echvi_2962 at 3538.839 kb on - strand, within Echvi_2962 at 3538.891 kb on + strand, within Echvi_2962 at 3538.897 kb on + strand, within Echvi_2962 at 3538.898 kb on - strand, within Echvi_2962 at 3538.898 kb on - strand, within Echvi_2962 at 3538.898 kb on - strand, within Echvi_2962 at 3538.898 kb on - strand, within Echvi_2962 at 3538.898 kb on - strand, within Echvi_2962 at 3538.898 kb on - strand, within Echvi_2962 at 3538.930 kb on + strand, within Echvi_2962 at 3538.931 kb on - strand, within Echvi_2962 at 3538.947 kb on - strand, within Echvi_2962
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 3,536,962 + Echvi_2959 0.61 -0.2 3,536,963 - Echvi_2959 0.61 -1.0 3,537,019 + +0.5 3,537,019 + +0.4 3,537,062 - +0.3 3,537,139 + +2.6 3,537,139 + -0.3 3,537,139 + +1.2 3,537,248 + Echvi_2960 0.54 +1.1 3,537,314 + Echvi_2960 0.87 -0.9 3,537,315 - Echvi_2960 0.87 -0.0 3,537,315 - Echvi_2960 0.87 +0.8 3,537,317 + Echvi_2960 0.88 +1.1 3,537,317 + Echvi_2960 0.88 -0.4 3,537,318 - Echvi_2960 0.89 -2.0 3,537,318 - Echvi_2960 0.89 +0.1 3,537,353 + -0.1 3,537,353 + -0.2 3,537,363 + +0.3 3,537,384 - -0.0 3,537,461 + +0.5 3,537,620 + -0.7 3,537,621 - +1.6 3,537,697 - +0.1 3,537,863 - -0.8 3,537,934 - +0.1 3,537,997 - Echvi_2961 0.45 -0.8 3,537,997 - Echvi_2961 0.45 -1.1 3,538,000 - Echvi_2961 0.48 +0.0 3,538,052 + +1.6 3,538,052 + +1.3 3,538,053 - -0.5 3,538,109 + -1.4 3,538,129 - -2.0 3,538,130 + +0.6 3,538,130 + -0.1 3,538,143 - +0.6 3,538,191 - Echvi_2962 0.11 -0.1 3,538,201 + Echvi_2962 0.11 -1.0 3,538,223 - Echvi_2962 0.13 -2.1 3,538,223 - Echvi_2962 0.13 -0.1 3,538,225 - Echvi_2962 0.13 -0.8 3,538,265 - Echvi_2962 0.16 -0.3 3,538,274 - Echvi_2962 0.17 +0.4 3,538,314 + Echvi_2962 0.19 -1.4 3,538,318 + Echvi_2962 0.20 +1.3 3,538,319 - Echvi_2962 0.20 +0.9 3,538,394 - Echvi_2962 0.25 +0.3 3,538,411 + Echvi_2962 0.26 +0.9 3,538,411 + Echvi_2962 0.26 +1.0 3,538,411 + Echvi_2962 0.26 -0.1 3,538,412 - Echvi_2962 0.27 +0.0 3,538,412 - Echvi_2962 0.27 -0.1 3,538,412 - Echvi_2962 0.27 -0.8 3,538,412 - Echvi_2962 0.27 -0.2 3,538,416 - Echvi_2962 0.27 -0.6 3,538,421 + Echvi_2962 0.27 +0.1 3,538,421 + Echvi_2962 0.27 -0.2 3,538,422 - Echvi_2962 0.27 +1.2 3,538,555 - Echvi_2962 0.37 -0.7 3,538,586 - Echvi_2962 0.39 +0.7 3,538,629 + Echvi_2962 0.42 +1.3 3,538,629 + Echvi_2962 0.42 -1.6 3,538,630 - Echvi_2962 0.42 +0.6 3,538,633 + Echvi_2962 0.42 -0.5 3,538,634 - Echvi_2962 0.43 -0.1 3,538,649 - Echvi_2962 0.44 -0.4 3,538,659 - Echvi_2962 0.44 -0.7 3,538,660 + Echvi_2962 0.44 -0.0 3,538,664 - Echvi_2962 0.45 +1.3 3,538,664 - Echvi_2962 0.45 -1.0 3,538,810 + Echvi_2962 0.55 +0.3 3,538,810 + Echvi_2962 0.55 +0.4 3,538,811 - Echvi_2962 0.55 -0.2 3,538,839 - Echvi_2962 0.57 +0.3 3,538,891 + Echvi_2962 0.61 -0.0 3,538,897 + Echvi_2962 0.62 -0.6 3,538,898 - Echvi_2962 0.62 -0.9 3,538,898 - Echvi_2962 0.62 -0.2 3,538,898 - Echvi_2962 0.62 -0.1 3,538,898 - Echvi_2962 0.62 -1.5 3,538,898 - Echvi_2962 0.62 +0.0 3,538,898 - Echvi_2962 0.62 +0.4 3,538,930 + Echvi_2962 0.64 -0.6 3,538,931 - Echvi_2962 0.64 -0.3 3,538,947 - Echvi_2962 0.65 +0.2
Or see this region's nucleotide sequence