Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2505
Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Chloramphenicol 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,977,286 | + | Echvi_2504 | 0.52 | -1.3 | |
2,978,080 | + | Echvi_2505 | 0.20 | -1.0 | |
2,978,162 | - | Echvi_2505 | 0.41 | +0.5 | |
2,978,162 | - | Echvi_2505 | 0.41 | +0.1 | |
2,978,178 | + | Echvi_2505 | 0.46 | -0.8 | |
2,978,199 | - | Echvi_2505 | 0.51 | +0.0 | |
2,978,210 | + | Echvi_2505 | 0.54 | -1.1 | |
2,978,215 | - | Echvi_2505 | 0.55 | -0.6 | |
2,978,261 | - | Echvi_2505 | 0.67 | -0.6 | |
2,978,293 | - | Echvi_2505 | 0.76 | -1.4 | |
2,978,453 | + | -0.5 | |||
2,978,454 | - | +0.1 | |||
2,978,455 | + | +0.4 | |||
2,978,466 | + | +0.1 | |||
2,978,472 | + | -2.0 | |||
2,978,512 | + | -0.8 | |||
2,978,666 | + | Echvi_2506 | 0.36 | -0.1 | |
2,978,843 | + | Echvi_2506 | 0.67 | +0.1 | |
2,978,892 | + | Echvi_2506 | 0.76 | -2.3 | |
2,978,920 | + | Echvi_2506 | 0.81 | -0.8 | |
2,978,943 | - | Echvi_2506 | 0.85 | +0.8 | |
2,979,018 | + | -0.0 | |||
2,979,019 | - | -0.0 | |||
2,979,031 | - | -0.2 | |||
2,979,053 | - | +0.1 | |||
2,979,063 | - | +0.7 | |||
2,979,089 | + | -1.5 | |||
2,979,115 | + | +2.7 |
Or see this region's nucleotide sequence