Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2062 and Echvi_2063 are separated by 104 nucleotides Echvi_2063 and Echvi_2064 are separated by 47 nucleotides Echvi_2064 and Echvi_2065 overlap by 4 nucleotides
Echvi_2062: Echvi_2062 - 3-isopropylmalate dehydrogenase, at 2,432,023 to 2,433,084
_2062
Echvi_2063: Echvi_2063 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 2,433,189 to 2,433,776
_2063
Echvi_2064: Echvi_2064 - Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein), at 2,433,824 to 2,434,558
_2064
Echvi_2065: Echvi_2065 - FAD dependent oxidoreductase., at 2,434,555 to 2,435,733
_2065
Position (kb)
2433
2434 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2432.222 kb on + strand, within Echvi_2062 at 2432.440 kb on + strand, within Echvi_2062 at 2432.517 kb on + strand, within Echvi_2062 at 2432.754 kb on + strand, within Echvi_2062 at 2433.089 kb on + strand at 2433.100 kb on - strand at 2433.105 kb on + strand at 2433.105 kb on + strand at 2433.106 kb on - strand at 2433.106 kb on - strand at 2433.106 kb on - strand at 2433.182 kb on - strand at 2433.210 kb on - strand at 2433.257 kb on - strand, within Echvi_2063 at 2433.366 kb on + strand, within Echvi_2063 at 2433.435 kb on - strand, within Echvi_2063 at 2433.532 kb on - strand, within Echvi_2063 at 2433.532 kb on - strand, within Echvi_2063 at 2433.586 kb on - strand, within Echvi_2063 at 2433.587 kb on + strand, within Echvi_2063 at 2433.587 kb on + strand, within Echvi_2063 at 2433.587 kb on + strand, within Echvi_2063 at 2433.587 kb on + strand, within Echvi_2063 at 2433.588 kb on - strand, within Echvi_2063 at 2433.642 kb on + strand, within Echvi_2063 at 2433.642 kb on + strand, within Echvi_2063 at 2433.642 kb on + strand, within Echvi_2063 at 2433.642 kb on + strand, within Echvi_2063 at 2433.687 kb on - strand, within Echvi_2063 at 2433.708 kb on + strand, within Echvi_2063 at 2433.769 kb on + strand at 2433.769 kb on + strand at 2433.770 kb on - strand at 2433.770 kb on - strand at 2433.770 kb on - strand at 2433.775 kb on - strand at 2433.779 kb on + strand at 2433.779 kb on + strand at 2433.780 kb on - strand at 2433.780 kb on - strand at 2433.780 kb on - strand at 2433.780 kb on - strand at 2433.780 kb on - strand at 2433.804 kb on + strand at 2433.916 kb on - strand, within Echvi_2064 at 2434.086 kb on + strand, within Echvi_2064 at 2434.086 kb on + strand, within Echvi_2064 at 2434.086 kb on + strand, within Echvi_2064 at 2434.087 kb on - strand, within Echvi_2064 at 2434.173 kb on + strand, within Echvi_2064 at 2434.174 kb on - strand, within Echvi_2064 at 2434.177 kb on + strand, within Echvi_2064 at 2434.177 kb on + strand, within Echvi_2064 at 2434.178 kb on - strand, within Echvi_2064 at 2434.221 kb on + strand, within Echvi_2064 at 2434.231 kb on + strand, within Echvi_2064 at 2434.231 kb on + strand, within Echvi_2064 at 2434.232 kb on - strand, within Echvi_2064 at 2434.274 kb on + strand, within Echvi_2064 at 2434.275 kb on - strand, within Echvi_2064 at 2434.275 kb on - strand, within Echvi_2064 at 2434.275 kb on - strand, within Echvi_2064 at 2434.321 kb on - strand, within Echvi_2064 at 2434.329 kb on + strand, within Echvi_2064 at 2434.406 kb on - strand, within Echvi_2064 at 2434.438 kb on + strand, within Echvi_2064 at 2434.438 kb on + strand, within Echvi_2064 at 2434.439 kb on - strand, within Echvi_2064 at 2434.502 kb on + strand at 2434.503 kb on - strand at 2434.557 kb on - strand at 2434.557 kb on - strand at 2434.599 kb on - strand at 2434.599 kb on - strand at 2434.599 kb on - strand at 2434.599 kb on - strand at 2434.691 kb on + strand, within Echvi_2065 at 2434.691 kb on + strand, within Echvi_2065 at 2434.692 kb on - strand, within Echvi_2065 at 2434.692 kb on - strand, within Echvi_2065 at 2434.693 kb on + strand, within Echvi_2065 at 2434.693 kb on + strand, within Echvi_2065 at 2434.693 kb on + strand, within Echvi_2065 at 2434.693 kb on + strand, within Echvi_2065 at 2434.694 kb on - strand, within Echvi_2065 at 2434.720 kb on + strand, within Echvi_2065 at 2434.738 kb on + strand, within Echvi_2065
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 2,432,222 + Echvi_2062 0.19 +2.7 2,432,440 + Echvi_2062 0.39 -2.1 2,432,517 + Echvi_2062 0.47 -0.6 2,432,754 + Echvi_2062 0.69 -0.5 2,433,089 + +0.3 2,433,100 - -0.6 2,433,105 + -0.4 2,433,105 + -0.1 2,433,106 - +1.4 2,433,106 - +0.3 2,433,106 - -0.4 2,433,182 - +0.5 2,433,210 - -0.7 2,433,257 - Echvi_2063 0.12 -2.4 2,433,366 + Echvi_2063 0.30 +0.7 2,433,435 - Echvi_2063 0.42 -1.4 2,433,532 - Echvi_2063 0.58 +0.7 2,433,532 - Echvi_2063 0.58 -0.3 2,433,586 - Echvi_2063 0.68 -0.9 2,433,587 + Echvi_2063 0.68 +1.3 2,433,587 + Echvi_2063 0.68 -1.0 2,433,587 + Echvi_2063 0.68 -0.9 2,433,587 + Echvi_2063 0.68 -1.7 2,433,588 - Echvi_2063 0.68 +1.1 2,433,642 + Echvi_2063 0.77 -0.4 2,433,642 + Echvi_2063 0.77 +0.7 2,433,642 + Echvi_2063 0.77 -0.2 2,433,642 + Echvi_2063 0.77 -1.2 2,433,687 - Echvi_2063 0.85 -0.9 2,433,708 + Echvi_2063 0.88 +0.3 2,433,769 + +1.7 2,433,769 + +0.2 2,433,770 - -0.7 2,433,770 - +1.0 2,433,770 - +0.4 2,433,775 - -0.3 2,433,779 + +0.7 2,433,779 + +0.4 2,433,780 - +0.4 2,433,780 - -0.3 2,433,780 - +0.0 2,433,780 - -1.0 2,433,780 - +0.1 2,433,804 + +1.0 2,433,916 - Echvi_2064 0.13 +0.2 2,434,086 + Echvi_2064 0.36 +0.5 2,434,086 + Echvi_2064 0.36 -1.4 2,434,086 + Echvi_2064 0.36 -0.8 2,434,087 - Echvi_2064 0.36 +0.0 2,434,173 + Echvi_2064 0.47 -0.3 2,434,174 - Echvi_2064 0.48 +0.1 2,434,177 + Echvi_2064 0.48 -0.8 2,434,177 + Echvi_2064 0.48 -1.6 2,434,178 - Echvi_2064 0.48 +0.1 2,434,221 + Echvi_2064 0.54 +0.5 2,434,231 + Echvi_2064 0.55 +0.5 2,434,231 + Echvi_2064 0.55 -2.5 2,434,232 - Echvi_2064 0.56 -0.6 2,434,274 + Echvi_2064 0.61 +0.7 2,434,275 - Echvi_2064 0.61 -0.1 2,434,275 - Echvi_2064 0.61 -0.7 2,434,275 - Echvi_2064 0.61 -1.7 2,434,321 - Echvi_2064 0.68 -0.2 2,434,329 + Echvi_2064 0.69 -0.4 2,434,406 - Echvi_2064 0.79 +1.1 2,434,438 + Echvi_2064 0.84 -0.4 2,434,438 + Echvi_2064 0.84 -0.6 2,434,439 - Echvi_2064 0.84 +0.8 2,434,502 + -1.3 2,434,503 - -0.7 2,434,557 - -0.3 2,434,557 - -2.1 2,434,599 - -1.1 2,434,599 - -0.7 2,434,599 - +0.0 2,434,599 - -1.1 2,434,691 + Echvi_2065 0.12 +0.7 2,434,691 + Echvi_2065 0.12 -0.4 2,434,692 - Echvi_2065 0.12 +0.4 2,434,692 - Echvi_2065 0.12 +0.3 2,434,693 + Echvi_2065 0.12 -1.3 2,434,693 + Echvi_2065 0.12 -0.1 2,434,693 + Echvi_2065 0.12 +0.6 2,434,693 + Echvi_2065 0.12 -0.0 2,434,694 - Echvi_2065 0.12 +1.1 2,434,720 + Echvi_2065 0.14 +1.4 2,434,738 + Echvi_2065 0.16 -1.1
Or see this region's nucleotide sequence