Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0811 and Echvi_0812 are separated by 113 nucleotides Echvi_0812 and Echvi_0813 are separated by 68 nucleotides Echvi_0813 and Echvi_0814 are separated by 75 nucleotides
Echvi_0811: Echvi_0811 - hypothetical protein, at 929,666 to 931,603
_0811
Echvi_0812: Echvi_0812 - SprT-like family., at 931,717 to 932,358
_0812
Echvi_0813: Echvi_0813 - hypothetical protein, at 932,427 to 932,648
_0813
Echvi_0814: Echvi_0814 - ribosome-associated GTPase EngA, at 932,724 to 934,037
_0814
Position (kb)
932
933 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 931.455 kb on + strand at 931.455 kb on + strand at 931.571 kb on - strand at 931.643 kb on + strand at 931.644 kb on - strand at 931.644 kb on - strand at 931.644 kb on - strand at 931.644 kb on - strand at 931.764 kb on + strand at 931.765 kb on - strand at 931.769 kb on + strand at 931.883 kb on + strand, within Echvi_0812 at 931.883 kb on + strand, within Echvi_0812 at 931.883 kb on + strand, within Echvi_0812 at 931.895 kb on - strand, within Echvi_0812 at 931.895 kb on - strand, within Echvi_0812 at 931.916 kb on + strand, within Echvi_0812 at 931.916 kb on + strand, within Echvi_0812 at 931.917 kb on - strand, within Echvi_0812 at 931.917 kb on - strand, within Echvi_0812 at 932.008 kb on - strand, within Echvi_0812 at 932.036 kb on + strand, within Echvi_0812 at 932.036 kb on + strand, within Echvi_0812 at 932.037 kb on - strand, within Echvi_0812 at 932.085 kb on + strand, within Echvi_0812 at 932.135 kb on + strand, within Echvi_0812 at 932.135 kb on + strand, within Echvi_0812 at 932.135 kb on + strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.173 kb on + strand, within Echvi_0812 at 932.174 kb on - strand, within Echvi_0812 at 932.344 kb on + strand at 932.345 kb on - strand at 932.345 kb on - strand at 932.345 kb on - strand at 932.364 kb on - strand at 932.364 kb on - strand at 932.371 kb on + strand at 932.428 kb on + strand at 932.478 kb on + strand, within Echvi_0813 at 932.478 kb on + strand, within Echvi_0813 at 932.484 kb on - strand, within Echvi_0813 at 932.607 kb on + strand, within Echvi_0813 at 932.608 kb on - strand, within Echvi_0813 at 932.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 931,455 + +0.0 931,455 + -1.2 931,571 - +0.1 931,643 + -1.9 931,644 - -0.8 931,644 - +0.1 931,644 - +0.2 931,644 - +0.1 931,764 + -1.3 931,765 - -0.9 931,769 + -1.2 931,883 + Echvi_0812 0.26 +0.0 931,883 + Echvi_0812 0.26 +0.7 931,883 + Echvi_0812 0.26 -0.9 931,895 - Echvi_0812 0.28 +0.2 931,895 - Echvi_0812 0.28 -0.8 931,916 + Echvi_0812 0.31 +0.8 931,916 + Echvi_0812 0.31 +0.9 931,917 - Echvi_0812 0.31 -0.0 931,917 - Echvi_0812 0.31 -1.5 932,008 - Echvi_0812 0.45 -0.1 932,036 + Echvi_0812 0.50 +0.3 932,036 + Echvi_0812 0.50 +1.1 932,037 - Echvi_0812 0.50 -1.2 932,085 + Echvi_0812 0.57 -2.0 932,135 + Echvi_0812 0.65 +0.0 932,135 + Echvi_0812 0.65 +1.1 932,135 + Echvi_0812 0.65 -0.2 932,136 - Echvi_0812 0.65 +0.0 932,136 - Echvi_0812 0.65 -1.3 932,136 - Echvi_0812 0.65 +0.3 932,136 - Echvi_0812 0.65 +2.4 932,136 - Echvi_0812 0.65 +0.1 932,173 + Echvi_0812 0.71 +0.3 932,174 - Echvi_0812 0.71 -0.1 932,344 + +0.5 932,345 - -1.3 932,345 - +0.1 932,345 - -0.3 932,364 - +1.7 932,364 - +1.7 932,371 + -1.5 932,428 + +0.5 932,478 + Echvi_0813 0.23 -0.8 932,478 + Echvi_0813 0.23 +0.0 932,484 - Echvi_0813 0.26 -1.3 932,607 + Echvi_0813 0.81 -0.2 932,608 - Echvi_0813 0.82 -0.9 932,629 - +0.2
Or see this region's nucleotide sequence