Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0515

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0513 and Echvi_0514 are separated by 55 nucleotidesEchvi_0514 and Echvi_0515 are separated by 79 nucleotidesEchvi_0515 and Echvi_0516 are separated by 130 nucleotides Echvi_0513: Echvi_0513 - Small-conductance mechanosensitive channel, at 573,949 to 574,845 _0513 Echvi_0514: Echvi_0514 - Uncharacterized membrane protein, at 574,901 to 575,617 _0514 Echvi_0515: Echvi_0515 - Ribulokinase (EC 2.7.1.16) (from data), at 575,697 to 577,385 _0515 Echvi_0516: Echvi_0516 - Alpha-L-arabinofuranosidase, at 577,516 to 579,066 _0516 Position (kb) 575 576 577 578Strain fitness (log2 ratio) -2 -1 0 1 2 3at 574.774 kb on - strandat 574.775 kb on + strandat 574.775 kb on + strandat 574.775 kb on + strandat 574.776 kb on - strandat 574.792 kb on + strandat 574.915 kb on + strandat 574.947 kb on - strandat 575.045 kb on - strand, within Echvi_0514at 575.094 kb on + strand, within Echvi_0514at 575.102 kb on + strand, within Echvi_0514at 575.102 kb on + strand, within Echvi_0514at 575.103 kb on - strand, within Echvi_0514at 575.106 kb on + strand, within Echvi_0514at 575.107 kb on - strand, within Echvi_0514at 575.107 kb on - strand, within Echvi_0514at 575.107 kb on - strand, within Echvi_0514at 575.132 kb on + strand, within Echvi_0514at 575.133 kb on - strand, within Echvi_0514at 575.136 kb on - strand, within Echvi_0514at 575.136 kb on - strand, within Echvi_0514at 575.238 kb on + strand, within Echvi_0514at 575.238 kb on + strand, within Echvi_0514at 575.239 kb on - strand, within Echvi_0514at 575.361 kb on - strand, within Echvi_0514at 575.361 kb on - strand, within Echvi_0514at 575.374 kb on - strand, within Echvi_0514at 575.402 kb on + strand, within Echvi_0514at 575.402 kb on + strand, within Echvi_0514at 575.437 kb on + strand, within Echvi_0514at 575.455 kb on + strand, within Echvi_0514at 575.477 kb on - strand, within Echvi_0514at 575.493 kb on + strand, within Echvi_0514at 575.521 kb on - strand, within Echvi_0514at 575.580 kb on - strandat 575.580 kb on - strandat 575.593 kb on - strandat 575.616 kb on - strandat 575.755 kb on + strandat 575.756 kb on - strandat 575.765 kb on - strandat 575.766 kb on + strandat 575.766 kb on + strandat 575.766 kb on + strandat 575.767 kb on - strandat 575.767 kb on - strandat 575.775 kb on - strandat 575.775 kb on - strandat 575.776 kb on + strandat 575.776 kb on + strandat 575.777 kb on - strandat 575.884 kb on + strand, within Echvi_0515at 575.884 kb on + strand, within Echvi_0515at 575.884 kb on + strand, within Echvi_0515at 575.884 kb on + strand, within Echvi_0515at 575.884 kb on + strand, within Echvi_0515at 575.884 kb on + strand, within Echvi_0515at 575.884 kb on + strand, within Echvi_0515at 576.317 kb on + strand, within Echvi_0515at 576.363 kb on + strand, within Echvi_0515at 576.363 kb on + strand, within Echvi_0515at 576.364 kb on - strand, within Echvi_0515at 576.510 kb on + strand, within Echvi_0515at 576.546 kb on + strand, within Echvi_0515at 576.671 kb on - strand, within Echvi_0515at 576.765 kb on - strand, within Echvi_0515at 576.931 kb on + strand, within Echvi_0515at 576.931 kb on + strand, within Echvi_0515at 576.932 kb on - strand, within Echvi_0515at 576.946 kb on + strand, within Echvi_0515at 576.955 kb on + strand, within Echvi_0515at 576.955 kb on + strand, within Echvi_0515at 577.230 kb on - strandat 577.329 kb on + strandat 577.354 kb on + strandat 577.359 kb on + strandat 577.428 kb on - strandat 577.430 kb on + strandat 577.431 kb on - strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.487 kb on - strandat 577.487 kb on - strandat 577.512 kb on + strandat 577.512 kb on + strandat 577.517 kb on + strandat 577.531 kb on + strandat 577.534 kb on + strandat 577.564 kb on + strandat 577.564 kb on + strandat 577.564 kb on + strandat 577.564 kb on + strandat 577.565 kb on - strandat 577.565 kb on - strandat 577.609 kb on + strandat 577.610 kb on - strandat 577.706 kb on - strand, within Echvi_0516at 577.895 kb on + strand, within Echvi_0516at 577.895 kb on + strand, within Echvi_0516at 577.899 kb on + strand, within Echvi_0516at 577.918 kb on - strand, within Echvi_0516at 578.076 kb on + strand, within Echvi_0516at 578.119 kb on - strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.145 kb on - strand, within Echvi_0516at 578.145 kb on - strand, within Echvi_0516at 578.274 kb on + strand, within Echvi_0516at 578.275 kb on - strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.277 kb on - strand, within Echvi_0516at 578.277 kb on - strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.280 kb on - strand, within Echvi_0516

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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574,774 - +0.9
574,775 + -0.9
574,775 + -0.0
574,775 + -0.1
574,776 - +0.8
574,792 + +0.9
574,915 + -1.0
574,947 - -0.6
575,045 - Echvi_0514 0.20 +0.2
575,094 + Echvi_0514 0.27 -0.1
575,102 + Echvi_0514 0.28 -0.2
575,102 + Echvi_0514 0.28 +0.5
575,103 - Echvi_0514 0.28 +0.3
575,106 + Echvi_0514 0.29 +0.9
575,107 - Echvi_0514 0.29 +0.4
575,107 - Echvi_0514 0.29 +0.5
575,107 - Echvi_0514 0.29 +0.4
575,132 + Echvi_0514 0.32 +1.7
575,133 - Echvi_0514 0.32 +0.6
575,136 - Echvi_0514 0.33 -0.3
575,136 - Echvi_0514 0.33 -0.5
575,238 + Echvi_0514 0.47 +1.1
575,238 + Echvi_0514 0.47 -1.7
575,239 - Echvi_0514 0.47 +1.9
575,361 - Echvi_0514 0.64 -1.3
575,361 - Echvi_0514 0.64 -1.3
575,374 - Echvi_0514 0.66 -0.4
575,402 + Echvi_0514 0.70 +1.1
575,402 + Echvi_0514 0.70 +0.3
575,437 + Echvi_0514 0.75 +1.9
575,455 + Echvi_0514 0.77 +1.3
575,477 - Echvi_0514 0.80 +0.2
575,493 + Echvi_0514 0.83 -0.5
575,521 - Echvi_0514 0.86 -2.1
575,580 - -1.1
575,580 - +0.2
575,593 - +1.2
575,616 - +0.1
575,755 + -0.0
575,756 - +1.4
575,765 - +1.2
575,766 + -0.3
575,766 + -0.4
575,766 + -0.4
575,767 - +0.2
575,767 - -0.4
575,775 - -1.3
575,775 - +0.0
575,776 + -1.3
575,776 + +0.4
575,777 - -0.1
575,884 + Echvi_0515 0.11 +0.3
575,884 + Echvi_0515 0.11 -0.5
575,884 + Echvi_0515 0.11 +0.1
575,884 + Echvi_0515 0.11 -1.5
575,884 + Echvi_0515 0.11 +2.9
575,884 + Echvi_0515 0.11 -1.8
575,884 + Echvi_0515 0.11 -0.1
576,317 + Echvi_0515 0.37 +0.3
576,363 + Echvi_0515 0.39 +2.0
576,363 + Echvi_0515 0.39 +0.8
576,364 - Echvi_0515 0.39 +1.2
576,510 + Echvi_0515 0.48 -1.3
576,546 + Echvi_0515 0.50 -1.0
576,671 - Echvi_0515 0.58 -0.2
576,765 - Echvi_0515 0.63 -0.7
576,931 + Echvi_0515 0.73 +1.2
576,931 + Echvi_0515 0.73 -1.5
576,932 - Echvi_0515 0.73 +0.9
576,946 + Echvi_0515 0.74 -0.6
576,955 + Echvi_0515 0.74 +0.5
576,955 + Echvi_0515 0.74 +0.6
577,230 - +0.4
577,329 + +1.6
577,354 + -0.2
577,359 + -1.6
577,428 - +1.9
577,430 + -2.1
577,431 - +1.9
577,486 + +0.3
577,486 + -1.0
577,486 + +1.6
577,486 + +0.2
577,486 + +1.9
577,486 + +0.3
577,487 - -1.0
577,487 - -0.3
577,512 + +0.5
577,512 + -1.0
577,517 + +0.4
577,531 + +0.2
577,534 + +0.1
577,564 + +1.1
577,564 + +0.4
577,564 + -0.5
577,564 + +0.5
577,565 - +2.9
577,565 - -0.1
577,609 + +0.1
577,610 - +2.9
577,706 - Echvi_0516 0.12 -0.5
577,895 + Echvi_0516 0.24 +1.6
577,895 + Echvi_0516 0.24 -0.6
577,899 + Echvi_0516 0.25 -0.9
577,918 - Echvi_0516 0.26 -0.9
578,076 + Echvi_0516 0.36 -0.3
578,119 - Echvi_0516 0.39 -0.3
578,144 + Echvi_0516 0.40 +0.5
578,144 + Echvi_0516 0.40 +0.9
578,144 + Echvi_0516 0.40 +0.1
578,145 - Echvi_0516 0.41 +2.9
578,145 - Echvi_0516 0.41 -0.9
578,274 + Echvi_0516 0.49 -0.6
578,275 - Echvi_0516 0.49 -0.8
578,276 + Echvi_0516 0.49 -0.1
578,276 + Echvi_0516 0.49 +0.4
578,276 + Echvi_0516 0.49 -1.2
578,277 - Echvi_0516 0.49 +0.3
578,277 - Echvi_0516 0.49 -1.1
578,279 + Echvi_0516 0.49 -0.0
578,279 + Echvi_0516 0.49 +0.5
578,279 + Echvi_0516 0.49 +0.9
578,280 - Echvi_0516 0.49 -0.1

Or see this region's nucleotide sequence