Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0482

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0481 and Echvi_0482 are separated by 221 nucleotidesEchvi_0482 and Echvi_0483 are separated by 76 nucleotides Echvi_0481: Echvi_0481 - NAD-dependent aldehyde dehydrogenases, at 529,441 to 530,970 _0481 Echvi_0482: Echvi_0482 - Uncharacterized protein conserved in bacteria, at 531,192 to 531,626 _0482 Echvi_0483: Echvi_0483 - hypothetical protein, at 531,703 to 532,836 _0483 Position (kb) 531 532Strain fitness (log2 ratio) -2 -1 0 1 2at 530.201 kb on - strand, within Echvi_0481at 530.389 kb on + strand, within Echvi_0481at 530.390 kb on - strand, within Echvi_0481at 530.411 kb on + strand, within Echvi_0481at 530.512 kb on + strand, within Echvi_0481at 530.512 kb on + strand, within Echvi_0481at 530.512 kb on + strand, within Echvi_0481at 530.513 kb on - strand, within Echvi_0481at 530.600 kb on - strand, within Echvi_0481at 530.610 kb on + strand, within Echvi_0481at 530.611 kb on - strand, within Echvi_0481at 530.611 kb on - strand, within Echvi_0481at 530.611 kb on - strand, within Echvi_0481at 530.732 kb on - strand, within Echvi_0481at 530.732 kb on - strand, within Echvi_0481at 530.732 kb on - strand, within Echvi_0481at 530.739 kb on - strand, within Echvi_0481at 530.739 kb on - strand, within Echvi_0481at 530.751 kb on - strand, within Echvi_0481at 530.817 kb on - strand, within Echvi_0481at 530.958 kb on - strandat 530.984 kb on + strandat 530.994 kb on + strandat 531.003 kb on + strandat 531.007 kb on + strandat 531.007 kb on + strandat 531.007 kb on + strandat 531.010 kb on - strandat 531.010 kb on - strandat 531.010 kb on - strandat 531.101 kb on - strandat 531.148 kb on + strandat 531.153 kb on + strandat 531.207 kb on - strandat 531.216 kb on - strandat 531.216 kb on - strandat 531.268 kb on + strand, within Echvi_0482at 531.442 kb on - strand, within Echvi_0482at 531.442 kb on - strand, within Echvi_0482at 531.622 kb on + strandat 531.622 kb on + strandat 531.622 kb on + strandat 531.623 kb on - strandat 531.623 kb on - strandat 531.625 kb on - strandat 531.625 kb on - strandat 531.625 kb on - strandat 531.626 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.628 kb on - strandat 531.628 kb on - strandat 531.628 kb on - strandat 531.631 kb on + strandat 531.631 kb on + strandat 531.632 kb on - strandat 531.632 kb on - strandat 531.637 kb on - strandat 531.647 kb on + strandat 531.694 kb on + strandat 531.695 kb on - strandat 531.695 kb on - strandat 531.831 kb on + strand, within Echvi_0483at 531.832 kb on - strand, within Echvi_0483at 531.916 kb on - strand, within Echvi_0483at 531.973 kb on - strand, within Echvi_0483at 531.986 kb on - strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.005 kb on - strand, within Echvi_0483at 532.005 kb on - strand, within Echvi_0483at 532.005 kb on - strand, within Echvi_0483at 532.057 kb on + strand, within Echvi_0483at 532.058 kb on - strand, within Echvi_0483at 532.100 kb on + strand, within Echvi_0483at 532.100 kb on + strand, within Echvi_0483at 532.100 kb on + strand, within Echvi_0483at 532.101 kb on - strand, within Echvi_0483at 532.101 kb on - strand, within Echvi_0483at 532.104 kb on + strand, within Echvi_0483at 532.104 kb on + strand, within Echvi_0483at 532.104 kb on + strand, within Echvi_0483at 532.105 kb on - strand, within Echvi_0483at 532.105 kb on - strand, within Echvi_0483at 532.110 kb on - strand, within Echvi_0483at 532.116 kb on + strand, within Echvi_0483at 532.116 kb on + strand, within Echvi_0483at 532.122 kb on - strand, within Echvi_0483at 532.181 kb on + strand, within Echvi_0483at 532.181 kb on + strand, within Echvi_0483at 532.181 kb on + strand, within Echvi_0483at 532.182 kb on - strand, within Echvi_0483at 532.182 kb on - strand, within Echvi_0483at 532.182 kb on - strand, within Echvi_0483at 532.211 kb on + strand, within Echvi_0483at 532.313 kb on + strand, within Echvi_0483at 532.314 kb on - strand, within Echvi_0483at 532.350 kb on + strand, within Echvi_0483at 532.352 kb on + strand, within Echvi_0483at 532.352 kb on + strand, within Echvi_0483at 532.353 kb on - strand, within Echvi_0483at 532.353 kb on - strand, within Echvi_0483at 532.469 kb on - strand, within Echvi_0483at 532.483 kb on + strand, within Echvi_0483at 532.529 kb on + strand, within Echvi_0483at 532.534 kb on + strand, within Echvi_0483

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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530,201 - Echvi_0481 0.50 +1.0
530,389 + Echvi_0481 0.62 -0.0
530,390 - Echvi_0481 0.62 +0.3
530,411 + Echvi_0481 0.63 -0.4
530,512 + Echvi_0481 0.70 -0.6
530,512 + Echvi_0481 0.70 -0.1
530,512 + Echvi_0481 0.70 +0.5
530,513 - Echvi_0481 0.70 -0.1
530,600 - Echvi_0481 0.76 -0.5
530,610 + Echvi_0481 0.76 +0.4
530,611 - Echvi_0481 0.76 -0.6
530,611 - Echvi_0481 0.76 -0.4
530,611 - Echvi_0481 0.76 +0.1
530,732 - Echvi_0481 0.84 +0.8
530,732 - Echvi_0481 0.84 -1.3
530,732 - Echvi_0481 0.84 +0.4
530,739 - Echvi_0481 0.85 -0.3
530,739 - Echvi_0481 0.85 -0.8
530,751 - Echvi_0481 0.86 +0.1
530,817 - Echvi_0481 0.90 +1.9
530,958 - -1.2
530,984 + +0.2
530,994 + +1.2
531,003 + +0.3
531,007 + -1.7
531,007 + +1.1
531,007 + +2.4
531,010 - +0.4
531,010 - +0.6
531,010 - -0.2
531,101 - +1.2
531,148 + -0.2
531,153 + +0.3
531,207 - +0.9
531,216 - -1.5
531,216 - +2.4
531,268 + Echvi_0482 0.17 -0.8
531,442 - Echvi_0482 0.57 -1.5
531,442 - Echvi_0482 0.57 +0.6
531,622 + -0.2
531,622 + +0.1
531,622 + +1.9
531,623 - +0.5
531,623 - -0.1
531,625 - +2.4
531,625 - -0.2
531,625 - -0.8
531,626 + +0.6
531,627 + +1.9
531,627 + +0.9
531,627 + -0.4
531,627 + +0.4
531,627 + -1.1
531,628 - +0.1
531,628 - -1.4
531,628 - +0.1
531,631 + +0.9
531,631 + -0.8
531,632 - -0.8
531,632 - -0.5
531,637 - -0.8
531,647 + +0.1
531,694 + -0.9
531,695 - -0.5
531,695 - +0.3
531,831 + Echvi_0483 0.11 -1.8
531,832 - Echvi_0483 0.11 -0.3
531,916 - Echvi_0483 0.19 -1.5
531,973 - Echvi_0483 0.24 +0.9
531,986 - Echvi_0483 0.25 -1.8
532,004 + Echvi_0483 0.27 +1.7
532,004 + Echvi_0483 0.27 +0.3
532,004 + Echvi_0483 0.27 -0.2
532,004 + Echvi_0483 0.27 -0.5
532,005 - Echvi_0483 0.27 +0.3
532,005 - Echvi_0483 0.27 -0.1
532,005 - Echvi_0483 0.27 +0.1
532,057 + Echvi_0483 0.31 -0.4
532,058 - Echvi_0483 0.31 +2.4
532,100 + Echvi_0483 0.35 +0.6
532,100 + Echvi_0483 0.35 +0.9
532,100 + Echvi_0483 0.35 +0.2
532,101 - Echvi_0483 0.35 -0.5
532,101 - Echvi_0483 0.35 +0.3
532,104 + Echvi_0483 0.35 -0.4
532,104 + Echvi_0483 0.35 +0.5
532,104 + Echvi_0483 0.35 +0.8
532,105 - Echvi_0483 0.35 -0.6
532,105 - Echvi_0483 0.35 -0.4
532,110 - Echvi_0483 0.36 -1.2
532,116 + Echvi_0483 0.36 +1.1
532,116 + Echvi_0483 0.36 -1.3
532,122 - Echvi_0483 0.37 +2.1
532,181 + Echvi_0483 0.42 -1.1
532,181 + Echvi_0483 0.42 -0.8
532,181 + Echvi_0483 0.42 +0.5
532,182 - Echvi_0483 0.42 -0.5
532,182 - Echvi_0483 0.42 -0.7
532,182 - Echvi_0483 0.42 -0.6
532,211 + Echvi_0483 0.45 +0.0
532,313 + Echvi_0483 0.54 -1.8
532,314 - Echvi_0483 0.54 +0.5
532,350 + Echvi_0483 0.57 -0.7
532,352 + Echvi_0483 0.57 +0.3
532,352 + Echvi_0483 0.57 +0.4
532,353 - Echvi_0483 0.57 +0.6
532,353 - Echvi_0483 0.57 -0.9
532,469 - Echvi_0483 0.68 -1.2
532,483 + Echvi_0483 0.69 +0.3
532,529 + Echvi_0483 0.73 -0.4
532,534 + Echvi_0483 0.73 -0.2

Or see this region's nucleotide sequence