Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0475

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0473 and Echvi_0474 are separated by 38 nucleotidesEchvi_0474 and Echvi_0475 are separated by 37 nucleotidesEchvi_0475 and Echvi_0476 are separated by 182 nucleotidesEchvi_0476 and Echvi_0477 overlap by 29 nucleotides Echvi_0473: Echvi_0473 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,723 to 521,754 _0473 Echvi_0474: Echvi_0474 - DoxX., at 521,793 to 522,173 _0474 Echvi_0475: Echvi_0475 - Uncharacterized protein conserved in bacteria, at 522,211 to 522,492 _0475 Echvi_0476: Echvi_0476 - Calcineurin-like phosphoesterase., at 522,675 to 523,334 _0476 Echvi_0477: Echvi_0477 - Exopolyphosphatase, at 523,306 to 524,853 _0477 Position (kb) 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 521.254 kb on + strand, within Echvi_0473at 521.254 kb on + strand, within Echvi_0473at 521.256 kb on + strand, within Echvi_0473at 521.257 kb on - strand, within Echvi_0473at 521.288 kb on - strand, within Echvi_0473at 521.294 kb on - strand, within Echvi_0473at 521.361 kb on - strand, within Echvi_0473at 521.483 kb on - strand, within Echvi_0473at 521.489 kb on + strand, within Echvi_0473at 521.490 kb on - strand, within Echvi_0473at 521.490 kb on - strand, within Echvi_0473at 521.625 kb on + strand, within Echvi_0473at 521.792 kb on + strandat 521.828 kb on - strandat 521.839 kb on + strand, within Echvi_0474at 521.840 kb on - strand, within Echvi_0474at 521.874 kb on + strand, within Echvi_0474at 521.875 kb on - strand, within Echvi_0474at 521.882 kb on + strand, within Echvi_0474at 521.882 kb on + strand, within Echvi_0474at 521.883 kb on - strand, within Echvi_0474at 521.883 kb on - strand, within Echvi_0474at 521.948 kb on - strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.107 kb on - strand, within Echvi_0474at 522.107 kb on - strand, within Echvi_0474at 522.150 kb on + strandat 522.171 kb on + strandat 522.171 kb on + strandat 522.172 kb on - strandat 522.176 kb on + strandat 522.185 kb on - strandat 522.211 kb on - strandat 522.215 kb on - strandat 522.215 kb on - strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.225 kb on + strandat 522.226 kb on - strandat 522.226 kb on - strandat 522.229 kb on + strandat 522.230 kb on - strandat 522.285 kb on - strand, within Echvi_0475at 522.301 kb on + strand, within Echvi_0475at 522.362 kb on + strand, within Echvi_0475at 522.366 kb on + strand, within Echvi_0475at 522.407 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.438 kb on + strand, within Echvi_0475at 522.506 kb on - strandat 522.517 kb on + strandat 522.517 kb on + strandat 522.522 kb on - strandat 522.576 kb on - strandat 522.595 kb on - strandat 522.613 kb on + strandat 522.626 kb on + strandat 522.641 kb on - strandat 522.712 kb on - strandat 522.799 kb on - strand, within Echvi_0476at 522.812 kb on - strand, within Echvi_0476at 522.923 kb on + strand, within Echvi_0476at 522.924 kb on - strand, within Echvi_0476at 522.948 kb on + strand, within Echvi_0476at 522.949 kb on - strand, within Echvi_0476at 523.222 kb on + strand, within Echvi_0476at 523.222 kb on + strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.307 kb on + strandat 523.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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521,254 + Echvi_0473 0.51 +0.1
521,254 + Echvi_0473 0.51 -0.6
521,256 + Echvi_0473 0.52 +0.9
521,257 - Echvi_0473 0.52 -1.7
521,288 - Echvi_0473 0.55 -0.8
521,294 - Echvi_0473 0.55 -1.0
521,361 - Echvi_0473 0.62 +0.8
521,483 - Echvi_0473 0.74 -1.1
521,489 + Echvi_0473 0.74 -0.6
521,490 - Echvi_0473 0.74 -0.4
521,490 - Echvi_0473 0.74 -0.2
521,625 + Echvi_0473 0.87 -0.1
521,792 + +0.9
521,828 - +0.0
521,839 + Echvi_0474 0.12 -1.5
521,840 - Echvi_0474 0.12 +2.3
521,874 + Echvi_0474 0.21 +1.6
521,875 - Echvi_0474 0.22 +1.5
521,882 + Echvi_0474 0.23 +0.5
521,882 + Echvi_0474 0.23 -0.2
521,883 - Echvi_0474 0.24 -0.6
521,883 - Echvi_0474 0.24 +0.1
521,948 - Echvi_0474 0.41 +0.3
522,072 + Echvi_0474 0.73 +0.4
522,072 + Echvi_0474 0.73 +0.2
522,072 + Echvi_0474 0.73 -1.9
522,072 + Echvi_0474 0.73 -0.3
522,072 + Echvi_0474 0.73 +0.1
522,072 + Echvi_0474 0.73 +1.3
522,073 - Echvi_0474 0.73 -0.4
522,073 - Echvi_0474 0.73 +0.8
522,073 - Echvi_0474 0.73 +0.5
522,073 - Echvi_0474 0.73 -0.4
522,073 - Echvi_0474 0.73 +2.7
522,073 - Echvi_0474 0.73 -1.2
522,107 - Echvi_0474 0.82 -0.2
522,107 - Echvi_0474 0.82 +0.5
522,150 + -0.7
522,171 + -0.2
522,171 + -0.8
522,172 - +0.4
522,176 + -2.8
522,185 - -0.6
522,211 - +0.1
522,215 - -0.3
522,215 - -0.1
522,219 + +1.4
522,219 + +0.6
522,225 + +0.8
522,226 - -0.7
522,226 - -0.5
522,229 + -0.6
522,230 - -0.9
522,285 - Echvi_0475 0.26 +0.6
522,301 + Echvi_0475 0.32 +0.7
522,362 + Echvi_0475 0.54 +0.6
522,366 + Echvi_0475 0.55 +0.8
522,407 + Echvi_0475 0.70 +1.6
522,421 + Echvi_0475 0.74 +0.3
522,421 + Echvi_0475 0.74 -1.1
522,422 - Echvi_0475 0.75 +0.8
522,422 - Echvi_0475 0.75 -0.3
522,438 + Echvi_0475 0.80 +0.4
522,506 - +0.6
522,517 + +0.3
522,517 + +0.4
522,522 - -1.0
522,576 - -0.4
522,595 - -0.3
522,613 + +0.3
522,626 + +1.5
522,641 - +0.5
522,712 - -0.4
522,799 - Echvi_0476 0.19 -0.5
522,812 - Echvi_0476 0.21 -1.4
522,923 + Echvi_0476 0.38 -1.0
522,924 - Echvi_0476 0.38 +0.1
522,948 + Echvi_0476 0.41 -0.2
522,949 - Echvi_0476 0.42 -1.0
523,222 + Echvi_0476 0.83 +0.3
523,222 + Echvi_0476 0.83 -1.2
523,223 - Echvi_0476 0.83 -0.6
523,223 - Echvi_0476 0.83 -0.6
523,223 - Echvi_0476 0.83 +0.4
523,223 - Echvi_0476 0.83 -0.0
523,307 + -0.2
523,421 + -1.2

Or see this region's nucleotide sequence