Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0432

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0430 and Echvi_0431 are separated by 309 nucleotidesEchvi_0431 and Echvi_0432 are separated by 15 nucleotidesEchvi_0432 and Echvi_0433 are separated by 176 nucleotidesEchvi_0433 and Echvi_0434 are separated by 3 nucleotides Echvi_0430: Echvi_0430 - hypothetical protein, at 472,527 to 473,333 _0430 Echvi_0431: Echvi_0431 - hypothetical protein, at 473,643 to 473,750 _0431 Echvi_0432: Echvi_0432 - hypothetical protein, at 473,766 to 474,407 _0432 Echvi_0433: Echvi_0433 - hypothetical protein, at 474,584 to 474,754 _0433 Echvi_0434: Echvi_0434 - hypothetical protein, at 474,758 to 475,555 _0434 Position (kb) 473 474 475Strain fitness (log2 ratio) -2 -1 0 1 2 3at 472.767 kb on - strand, within Echvi_0430at 472.787 kb on - strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.826 kb on - strand, within Echvi_0430at 472.838 kb on + strand, within Echvi_0430at 472.870 kb on + strand, within Echvi_0430at 472.870 kb on + strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.905 kb on + strand, within Echvi_0430at 472.937 kb on + strand, within Echvi_0430at 472.937 kb on + strand, within Echvi_0430at 472.942 kb on + strand, within Echvi_0430at 472.943 kb on - strand, within Echvi_0430at 472.994 kb on + strand, within Echvi_0430at 472.995 kb on - strand, within Echvi_0430at 472.998 kb on + strand, within Echvi_0430at 472.998 kb on + strand, within Echvi_0430at 472.998 kb on + strand, within Echvi_0430at 472.999 kb on - strand, within Echvi_0430at 472.999 kb on - strand, within Echvi_0430at 473.026 kb on - strand, within Echvi_0430at 473.037 kb on - strand, within Echvi_0430at 473.038 kb on + strand, within Echvi_0430at 473.039 kb on - strand, within Echvi_0430at 473.039 kb on - strand, within Echvi_0430at 473.048 kb on + strand, within Echvi_0430at 473.049 kb on - strand, within Echvi_0430at 473.049 kb on - strand, within Echvi_0430at 473.087 kb on + strand, within Echvi_0430at 473.113 kb on + strand, within Echvi_0430at 473.159 kb on + strand, within Echvi_0430at 473.298 kb on - strandat 473.429 kb on - strandat 473.443 kb on - strandat 473.484 kb on + strandat 473.564 kb on + strandat 473.565 kb on - strandat 473.611 kb on + strandat 473.611 kb on + strandat 473.611 kb on + strandat 473.612 kb on - strandat 473.612 kb on - strandat 473.613 kb on + strandat 473.620 kb on - strandat 473.620 kb on - strandat 473.650 kb on + strandat 473.680 kb on + strand, within Echvi_0431at 473.680 kb on + strand, within Echvi_0431at 473.680 kb on + strand, within Echvi_0431at 473.681 kb on - strand, within Echvi_0431at 473.681 kb on - strand, within Echvi_0431at 473.687 kb on + strand, within Echvi_0431at 473.688 kb on - strand, within Echvi_0431at 473.717 kb on + strand, within Echvi_0431at 473.752 kb on + strandat 473.761 kb on - strandat 473.765 kb on + strandat 473.766 kb on - strandat 473.766 kb on - strandat 473.770 kb on + strandat 473.850 kb on + strand, within Echvi_0432at 473.850 kb on + strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.925 kb on + strand, within Echvi_0432at 473.925 kb on + strand, within Echvi_0432at 473.926 kb on - strand, within Echvi_0432at 473.927 kb on + strand, within Echvi_0432at 473.927 kb on + strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.962 kb on + strand, within Echvi_0432at 473.993 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.023 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.100 kb on + strand, within Echvi_0432at 474.142 kb on + strand, within Echvi_0432at 474.167 kb on + strand, within Echvi_0432at 474.168 kb on - strand, within Echvi_0432at 474.229 kb on + strand, within Echvi_0432at 474.321 kb on + strand, within Echvi_0432at 474.322 kb on - strand, within Echvi_0432at 474.322 kb on - strand, within Echvi_0432at 474.342 kb on + strand, within Echvi_0432at 474.348 kb on + strandat 474.359 kb on - strandat 474.394 kb on - strandat 474.469 kb on - strandat 474.480 kb on - strandat 474.488 kb on + strandat 474.507 kb on - strandat 474.526 kb on - strandat 474.529 kb on - strandat 474.546 kb on + strandat 474.584 kb on - strandat 474.729 kb on - strand, within Echvi_0433at 474.763 kb on + strandat 474.763 kb on + strandat 474.765 kb on + strandat 474.847 kb on + strand, within Echvi_0434at 474.847 kb on + strand, within Echvi_0434at 474.849 kb on + strand, within Echvi_0434at 474.850 kb on - strand, within Echvi_0434at 474.850 kb on - strand, within Echvi_0434at 474.875 kb on - strand, within Echvi_0434at 474.875 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.896 kb on - strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.918 kb on + strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.929 kb on - strand, within Echvi_0434at 474.954 kb on - strand, within Echvi_0434at 474.968 kb on - strand, within Echvi_0434at 475.015 kb on + strand, within Echvi_0434at 475.036 kb on - strand, within Echvi_0434at 475.036 kb on - strand, within Echvi_0434at 475.047 kb on + strand, within Echvi_0434at 475.047 kb on + strand, within Echvi_0434at 475.048 kb on - strand, within Echvi_0434at 475.050 kb on - strand, within Echvi_0434at 475.057 kb on - strand, within Echvi_0434at 475.065 kb on - strand, within Echvi_0434at 475.150 kb on - strand, within Echvi_0434at 475.154 kb on + strand, within Echvi_0434at 475.155 kb on - strand, within Echvi_0434at 475.159 kb on - strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.204 kb on - strand, within Echvi_0434at 475.219 kb on - strand, within Echvi_0434at 475.230 kb on - strand, within Echvi_0434at 475.230 kb on - strand, within Echvi_0434at 475.240 kb on - strand, within Echvi_0434at 475.247 kb on - strand, within Echvi_0434at 475.252 kb on - strand, within Echvi_0434at 475.287 kb on + strand, within Echvi_0434at 475.313 kb on + strand, within Echvi_0434at 475.313 kb on + strand, within Echvi_0434at 475.317 kb on - strand, within Echvi_0434at 475.365 kb on + strand, within Echvi_0434at 475.373 kb on + strand, within Echvi_0434at 475.374 kb on - strand, within Echvi_0434at 475.377 kb on + strand, within Echvi_0434

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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472,767 - Echvi_0430 0.30 +0.3
472,787 - Echvi_0430 0.32 -0.7
472,798 + Echvi_0430 0.34 +0.1
472,798 + Echvi_0430 0.34 -0.3
472,798 + Echvi_0430 0.34 -0.2
472,799 - Echvi_0430 0.34 +0.7
472,799 - Echvi_0430 0.34 -0.4
472,799 - Echvi_0430 0.34 +0.6
472,799 - Echvi_0430 0.34 -0.4
472,826 - Echvi_0430 0.37 +1.1
472,838 + Echvi_0430 0.39 -0.6
472,870 + Echvi_0430 0.43 +2.8
472,870 + Echvi_0430 0.43 +0.7
472,871 - Echvi_0430 0.43 +1.4
472,871 - Echvi_0430 0.43 -1.3
472,871 - Echvi_0430 0.43 +0.7
472,871 - Echvi_0430 0.43 -1.0
472,871 - Echvi_0430 0.43 +0.6
472,905 + Echvi_0430 0.47 +1.2
472,937 + Echvi_0430 0.51 -0.2
472,937 + Echvi_0430 0.51 -0.1
472,942 + Echvi_0430 0.51 +0.6
472,943 - Echvi_0430 0.52 -0.2
472,994 + Echvi_0430 0.58 -0.7
472,995 - Echvi_0430 0.58 -0.2
472,998 + Echvi_0430 0.58 -0.6
472,998 + Echvi_0430 0.58 +0.2
472,998 + Echvi_0430 0.58 -0.3
472,999 - Echvi_0430 0.58 -0.1
472,999 - Echvi_0430 0.58 -1.0
473,026 - Echvi_0430 0.62 +0.2
473,037 - Echvi_0430 0.63 -0.1
473,038 + Echvi_0430 0.63 +1.5
473,039 - Echvi_0430 0.63 +1.5
473,039 - Echvi_0430 0.63 +0.2
473,048 + Echvi_0430 0.65 +1.8
473,049 - Echvi_0430 0.65 +0.2
473,049 - Echvi_0430 0.65 -0.2
473,087 + Echvi_0430 0.69 +0.0
473,113 + Echvi_0430 0.73 +0.0
473,159 + Echvi_0430 0.78 -0.4
473,298 - +1.3
473,429 - +0.2
473,443 - -0.9
473,484 + -0.5
473,564 + -1.0
473,565 - -0.0
473,611 + -0.7
473,611 + -0.7
473,611 + +0.3
473,612 - -0.9
473,612 - -0.3
473,613 + -0.4
473,620 - +1.1
473,620 - +0.5
473,650 + +0.1
473,680 + Echvi_0431 0.34 -0.3
473,680 + Echvi_0431 0.34 -0.6
473,680 + Echvi_0431 0.34 -0.2
473,681 - Echvi_0431 0.35 +1.8
473,681 - Echvi_0431 0.35 -0.4
473,687 + Echvi_0431 0.41 -0.5
473,688 - Echvi_0431 0.42 +1.2
473,717 + Echvi_0431 0.69 -0.5
473,752 + +0.1
473,761 - +0.1
473,765 + -2.1
473,766 - -1.0
473,766 - +1.3
473,770 + +0.2
473,850 + Echvi_0432 0.13 +2.6
473,850 + Echvi_0432 0.13 -0.5
473,851 - Echvi_0432 0.13 -0.7
473,851 - Echvi_0432 0.13 -2.0
473,851 - Echvi_0432 0.13 +0.3
473,851 - Echvi_0432 0.13 +0.9
473,851 - Echvi_0432 0.13 +0.7
473,925 + Echvi_0432 0.25 +1.1
473,925 + Echvi_0432 0.25 +0.6
473,926 - Echvi_0432 0.25 +0.3
473,927 + Echvi_0432 0.25 +0.6
473,927 + Echvi_0432 0.25 +0.4
473,933 - Echvi_0432 0.26 -1.5
473,933 - Echvi_0432 0.26 +1.4
473,933 - Echvi_0432 0.26 -0.7
473,962 + Echvi_0432 0.31 +0.5
473,993 + Echvi_0432 0.35 -0.5
474,010 + Echvi_0432 0.38 +0.8
474,010 + Echvi_0432 0.38 -0.1
474,010 + Echvi_0432 0.38 -0.0
474,023 + Echvi_0432 0.40 +0.1
474,029 + Echvi_0432 0.41 -0.6
474,029 + Echvi_0432 0.41 +1.1
474,029 + Echvi_0432 0.41 +1.8
474,100 + Echvi_0432 0.52 -0.5
474,142 + Echvi_0432 0.59 +0.1
474,167 + Echvi_0432 0.62 -0.1
474,168 - Echvi_0432 0.63 -0.4
474,229 + Echvi_0432 0.72 +0.5
474,321 + Echvi_0432 0.86 +0.2
474,322 - Echvi_0432 0.87 -0.4
474,322 - Echvi_0432 0.87 -0.1
474,342 + Echvi_0432 0.90 +0.5
474,348 + +0.9
474,359 - -0.3
474,394 - +0.4
474,469 - +1.4
474,480 - +0.0
474,488 + +0.4
474,507 - +0.9
474,526 - -0.2
474,529 - +0.1
474,546 + +0.6
474,584 - -0.6
474,729 - Echvi_0433 0.85 +0.8
474,763 + -0.1
474,763 + +0.9
474,765 + +0.1
474,847 + Echvi_0434 0.11 +0.3
474,847 + Echvi_0434 0.11 -0.2
474,849 + Echvi_0434 0.11 -1.5
474,850 - Echvi_0434 0.12 -1.2
474,850 - Echvi_0434 0.12 -0.6
474,875 - Echvi_0434 0.15 +1.2
474,875 - Echvi_0434 0.15 +0.8
474,884 - Echvi_0434 0.16 +1.3
474,884 - Echvi_0434 0.16 +1.2
474,884 - Echvi_0434 0.16 -0.5
474,896 - Echvi_0434 0.17 -0.6
474,912 + Echvi_0434 0.19 -0.1
474,912 + Echvi_0434 0.19 -0.3
474,912 + Echvi_0434 0.19 -0.6
474,913 - Echvi_0434 0.19 +0.3
474,913 - Echvi_0434 0.19 +0.5
474,913 - Echvi_0434 0.19 -0.4
474,916 + Echvi_0434 0.20 +0.5
474,916 + Echvi_0434 0.20 +0.1
474,916 + Echvi_0434 0.20 -0.6
474,916 + Echvi_0434 0.20 -1.1
474,916 + Echvi_0434 0.20 +1.1
474,917 - Echvi_0434 0.20 +1.4
474,917 - Echvi_0434 0.20 +0.4
474,917 - Echvi_0434 0.20 -0.7
474,917 - Echvi_0434 0.20 -0.5
474,917 - Echvi_0434 0.20 -0.1
474,917 - Echvi_0434 0.20 +0.8
474,917 - Echvi_0434 0.20 +1.3
474,918 + Echvi_0434 0.20 -0.2
474,919 - Echvi_0434 0.20 +0.4
474,919 - Echvi_0434 0.20 -0.4
474,919 - Echvi_0434 0.20 +0.7
474,929 - Echvi_0434 0.21 -0.2
474,954 - Echvi_0434 0.25 -0.7
474,968 - Echvi_0434 0.26 -0.1
475,015 + Echvi_0434 0.32 +0.1
475,036 - Echvi_0434 0.35 +0.6
475,036 - Echvi_0434 0.35 +0.1
475,047 + Echvi_0434 0.36 +0.9
475,047 + Echvi_0434 0.36 +0.3
475,048 - Echvi_0434 0.36 -0.3
475,050 - Echvi_0434 0.37 -0.3
475,057 - Echvi_0434 0.37 +0.8
475,065 - Echvi_0434 0.38 -0.8
475,150 - Echvi_0434 0.49 +0.5
475,154 + Echvi_0434 0.50 +0.5
475,155 - Echvi_0434 0.50 +1.0
475,159 - Echvi_0434 0.50 -0.8
475,181 + Echvi_0434 0.53 -0.4
475,181 + Echvi_0434 0.53 -0.2
475,181 + Echvi_0434 0.53 +0.0
475,184 - Echvi_0434 0.53 +0.6
475,184 - Echvi_0434 0.53 +1.3
475,184 - Echvi_0434 0.53 +0.8
475,184 - Echvi_0434 0.53 -0.0
475,184 - Echvi_0434 0.53 +0.0
475,204 - Echvi_0434 0.56 +0.4
475,219 - Echvi_0434 0.58 -0.5
475,230 - Echvi_0434 0.59 -0.4
475,230 - Echvi_0434 0.59 +0.1
475,240 - Echvi_0434 0.60 -0.1
475,247 - Echvi_0434 0.61 +0.8
475,252 - Echvi_0434 0.62 -1.7
475,287 + Echvi_0434 0.66 -0.7
475,313 + Echvi_0434 0.70 -1.2
475,313 + Echvi_0434 0.70 -0.7
475,317 - Echvi_0434 0.70 +1.2
475,365 + Echvi_0434 0.76 +0.1
475,373 + Echvi_0434 0.77 -0.6
475,374 - Echvi_0434 0.77 +1.3
475,377 + Echvi_0434 0.78 +0.0

Or see this region's nucleotide sequence