Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0258

Experiment: m.b. Chloramphenicol 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0257 and Echvi_0258 are separated by 5 nucleotidesEchvi_0258 and Echvi_0259 are separated by 22 nucleotidesEchvi_0259 and Echvi_0260 are separated by 99 nucleotides Echvi_0257: Echvi_0257 - translation elongation factor EF-G, at 259,598 to 261,718 _0257 Echvi_0258: Echvi_0258 - ribosomal protein S7, bacterial/organelle, at 261,724 to 262,191 _0258 Echvi_0259: Echvi_0259 - ribosomal protein S12, bacterial/organelle, at 262,214 to 262,594 _0259 Echvi_0260: Echvi_0260 - Protein of unknown function (DUF3467)., at 262,694 to 263,023 _0260 Position (kb) 261 262 263Strain fitness (log2 ratio) -1 0 1 2 3 4at 262.757 kb on + strand, within Echvi_0260at 262.763 kb on - strand, within Echvi_0260at 262.840 kb on + strand, within Echvi_0260at 262.840 kb on + strand, within Echvi_0260at 262.941 kb on + strand, within Echvi_0260at 262.941 kb on + strand, within Echvi_0260at 263.011 kb on + strandat 263.012 kb on - strandat 263.012 kb on - strandat 263.012 kb on - strandat 263.014 kb on + strandat 263.057 kb on - strandat 263.057 kb on - strandat 263.110 kb on + strandat 263.111 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
remove
262,757 + Echvi_0260 0.19 +0.9
262,763 - Echvi_0260 0.21 +1.0
262,840 + Echvi_0260 0.44 +0.6
262,840 + Echvi_0260 0.44 -0.3
262,941 + Echvi_0260 0.75 +1.6
262,941 + Echvi_0260 0.75 +0.8
263,011 + -0.1
263,012 - -0.8
263,012 - -1.2
263,012 - +0.3
263,014 + +0.2
263,057 - +3.8
263,057 - +0.4
263,110 + +0.6
263,111 - +0.3

Or see this region's nucleotide sequence