Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0045 and Echvi_0046 are separated by 150 nucleotides Echvi_0046 and Echvi_0047 are separated by 3 nucleotides Echvi_0047 and Echvi_0048 are separated by 122 nucleotides
Echvi_0045: Echvi_0045 - Protein of unknown function (DUF3108)., at 42,778 to 43,566
_0045
Echvi_0046: Echvi_0046 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 43,717 to 44,406
_0046
Echvi_0047: Echvi_0047 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 44,410 to 45,468
_0047
Echvi_0048: Echvi_0048 - Pseudouridylate synthases, 23S RNA-specific, at 45,591 to 46,298
_0048
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.430 kb on + strand, within Echvi_0045 at 43.431 kb on - strand, within Echvi_0045 at 43.449 kb on + strand, within Echvi_0045 at 43.450 kb on - strand, within Echvi_0045 at 43.452 kb on + strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.525 kb on - strand at 43.565 kb on - strand at 43.751 kb on + strand at 43.786 kb on + strand, within Echvi_0046 at 43.807 kb on + strand, within Echvi_0046 at 44.004 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.034 kb on + strand, within Echvi_0046 at 44.158 kb on - strand, within Echvi_0046 at 44.316 kb on - strand, within Echvi_0046 at 44.404 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.410 kb on - strand at 44.454 kb on + strand at 44.454 kb on + strand at 44.455 kb on - strand at 44.456 kb on + strand at 44.456 kb on + strand at 44.601 kb on + strand, within Echvi_0047 at 44.602 kb on - strand, within Echvi_0047 at 44.602 kb on - strand, within Echvi_0047 at 44.606 kb on - strand, within Echvi_0047 at 44.714 kb on - strand, within Echvi_0047 at 44.831 kb on - strand, within Echvi_0047 at 44.873 kb on + strand, within Echvi_0047 at 44.949 kb on - strand, within Echvi_0047 at 44.983 kb on + strand, within Echvi_0047 at 44.984 kb on - strand, within Echvi_0047 at 44.984 kb on - strand, within Echvi_0047 at 45.057 kb on + strand at 45.058 kb on - strand, within Echvi_0047 at 45.076 kb on + strand, within Echvi_0047 at 45.077 kb on - strand, within Echvi_0047 at 45.094 kb on + strand, within Echvi_0047 at 45.095 kb on - strand, within Echvi_0047 at 45.118 kb on - strand, within Echvi_0047 at 45.163 kb on + strand, within Echvi_0047 at 45.164 kb on - strand, within Echvi_0047 at 45.164 kb on - strand, within Echvi_0047 at 45.204 kb on + strand, within Echvi_0047 at 45.362 kb on + strand, within Echvi_0047 at 45.362 kb on + strand, within Echvi_0047 at 45.363 kb on - strand at 45.363 kb on - strand at 45.512 kb on + strand at 45.601 kb on + strand at 45.617 kb on + strand at 45.639 kb on + strand at 45.641 kb on + strand at 45.641 kb on + strand at 45.663 kb on + strand, within Echvi_0048 at 45.663 kb on + strand, within Echvi_0048 at 45.723 kb on + strand, within Echvi_0048 at 45.723 kb on + strand, within Echvi_0048 at 45.883 kb on - strand, within Echvi_0048 at 46.127 kb on + strand, within Echvi_0048 at 46.197 kb on + strand, within Echvi_0048 at 46.328 kb on - strand at 46.333 kb on - strand at 46.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 43,430 + Echvi_0045 0.83 -0.6 43,431 - Echvi_0045 0.83 -0.7 43,449 + Echvi_0045 0.85 -1.4 43,450 - Echvi_0045 0.85 +1.4 43,452 + Echvi_0045 0.85 -1.3 43,453 - Echvi_0045 0.86 +0.8 43,453 - Echvi_0045 0.86 +0.6 43,525 - +1.1 43,565 - -0.7 43,751 + -1.0 43,786 + Echvi_0046 0.10 +0.5 43,807 + Echvi_0046 0.13 +0.5 44,004 - Echvi_0046 0.42 -0.5 44,019 - Echvi_0046 0.44 +1.4 44,019 - Echvi_0046 0.44 -2.4 44,034 + Echvi_0046 0.46 +0.2 44,158 - Echvi_0046 0.64 +0.9 44,316 - Echvi_0046 0.87 -0.1 44,404 + +1.1 44,409 + +0.4 44,409 + -0.0 44,409 + -0.2 44,410 - +0.5 44,454 + +2.5 44,454 + +0.2 44,455 - -0.4 44,456 + -0.1 44,456 + +1.2 44,601 + Echvi_0047 0.18 +0.5 44,602 - Echvi_0047 0.18 -0.5 44,602 - Echvi_0047 0.18 -1.4 44,606 - Echvi_0047 0.19 +0.2 44,714 - Echvi_0047 0.29 +1.8 44,831 - Echvi_0047 0.40 -1.0 44,873 + Echvi_0047 0.44 +0.8 44,949 - Echvi_0047 0.51 -0.5 44,983 + Echvi_0047 0.54 -0.4 44,984 - Echvi_0047 0.54 +1.1 44,984 - Echvi_0047 0.54 -1.8 45,057 + +1.8 45,058 - Echvi_0047 0.61 -1.0 45,076 + Echvi_0047 0.63 +0.5 45,077 - Echvi_0047 0.63 +0.2 45,094 + Echvi_0047 0.65 -0.2 45,095 - Echvi_0047 0.65 -1.7 45,118 - Echvi_0047 0.67 -0.2 45,163 + Echvi_0047 0.71 +0.2 45,164 - Echvi_0047 0.71 +1.2 45,164 - Echvi_0047 0.71 -0.8 45,204 + Echvi_0047 0.75 -1.7 45,362 + Echvi_0047 0.90 -0.0 45,362 + Echvi_0047 0.90 -0.5 45,363 - -1.1 45,363 - +0.6 45,512 + -1.1 45,601 + -0.1 45,617 + -0.5 45,639 + -0.9 45,641 + +1.8 45,641 + -0.1 45,663 + Echvi_0048 0.10 -0.8 45,663 + Echvi_0048 0.10 +1.2 45,723 + Echvi_0048 0.19 -0.7 45,723 + Echvi_0048 0.19 +1.0 45,883 - Echvi_0048 0.41 +0.2 46,127 + Echvi_0048 0.76 -0.2 46,197 + Echvi_0048 0.86 -0.7 46,328 - +2.4 46,333 - -0.3 46,392 - +2.6
Or see this region's nucleotide sequence