Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3684 and Atu3685 are separated by 14 nucleotides Atu3685 and Atu3686 are separated by 27 nucleotides
Atu3684: Atu3684 - siderophore biosynthesis protein, at 757,414 to 759,081
Atu3684
Atu3685: Atu3685 - thioesterase, siderophore biosynthesis protein, at 759,096 to 759,842
Atu3685
Atu3686: Atu3686 - siderophore biosynthesis protein, at 759,870 to 760,763
Atu3686
Position (kb) 759
760 Strain fitness (log2 ratio) -2
-1
0
1
2 at 758.150 kb on + strand, within Atu3684 at 758.168 kb on - strand, within Atu3684 at 758.177 kb on - strand, within Atu3684 at 758.283 kb on + strand, within Atu3684 at 758.378 kb on + strand, within Atu3684 at 758.425 kb on - strand, within Atu3684 at 758.475 kb on - strand, within Atu3684 at 758.503 kb on + strand, within Atu3684 at 758.565 kb on - strand, within Atu3684 at 758.616 kb on + strand, within Atu3684 at 758.624 kb on - strand, within Atu3684 at 758.626 kb on - strand, within Atu3684 at 758.726 kb on - strand, within Atu3684 at 758.738 kb on - strand, within Atu3684 at 758.766 kb on + strand, within Atu3684 at 758.774 kb on - strand, within Atu3684 at 758.774 kb on - strand, within Atu3684 at 758.799 kb on - strand, within Atu3684 at 758.872 kb on + strand, within Atu3684 at 758.877 kb on + strand, within Atu3684 at 758.877 kb on + strand, within Atu3684 at 759.260 kb on - strand, within Atu3685 at 759.260 kb on - strand, within Atu3685 at 759.267 kb on - strand, within Atu3685 at 759.306 kb on + strand, within Atu3685 at 759.307 kb on + strand, within Atu3685 at 759.315 kb on - strand, within Atu3685 at 759.448 kb on + strand, within Atu3685 at 759.456 kb on - strand, within Atu3685 at 759.536 kb on + strand, within Atu3685 at 759.638 kb on - strand, within Atu3685 at 759.649 kb on + strand, within Atu3685 at 759.724 kb on + strand, within Atu3685 at 759.758 kb on - strand, within Atu3685 at 759.807 kb on + strand at 759.812 kb on + strand at 759.812 kb on + strand at 759.822 kb on + strand at 759.886 kb on + strand at 759.948 kb on - strand at 759.966 kb on - strand, within Atu3686 at 760.091 kb on - strand, within Atu3686 at 760.112 kb on - strand, within Atu3686 at 760.208 kb on + strand, within Atu3686 at 760.208 kb on + strand, within Atu3686 at 760.216 kb on - strand, within Atu3686 at 760.323 kb on + strand, within Atu3686 at 760.350 kb on - strand, within Atu3686 at 760.376 kb on - strand, within Atu3686 at 760.503 kb on - strand, within Atu3686 at 760.511 kb on + strand, within Atu3686 at 760.657 kb on + strand, within Atu3686 at 760.667 kb on - strand, within Atu3686 at 760.688 kb on - strand at 760.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 758,150 + Atu3684 0.44 +0.3 758,168 - Atu3684 0.45 -0.2 758,177 - Atu3684 0.46 -0.3 758,283 + Atu3684 0.52 -0.3 758,378 + Atu3684 0.58 -2.1 758,425 - Atu3684 0.61 -1.1 758,475 - Atu3684 0.64 -0.9 758,503 + Atu3684 0.65 +0.7 758,565 - Atu3684 0.69 -0.1 758,616 + Atu3684 0.72 +2.7 758,624 - Atu3684 0.73 -0.5 758,626 - Atu3684 0.73 -0.4 758,726 - Atu3684 0.79 -0.4 758,738 - Atu3684 0.79 -0.9 758,766 + Atu3684 0.81 +0.3 758,774 - Atu3684 0.82 -0.7 758,774 - Atu3684 0.82 +0.1 758,799 - Atu3684 0.83 -0.8 758,872 + Atu3684 0.87 -1.1 758,877 + Atu3684 0.88 -0.7 758,877 + Atu3684 0.88 -0.4 759,260 - Atu3685 0.22 -0.4 759,260 - Atu3685 0.22 -0.4 759,267 - Atu3685 0.23 -0.2 759,306 + Atu3685 0.28 -1.1 759,307 + Atu3685 0.28 -0.7 759,315 - Atu3685 0.29 -0.2 759,448 + Atu3685 0.47 +0.3 759,456 - Atu3685 0.48 -0.4 759,536 + Atu3685 0.59 -0.0 759,638 - Atu3685 0.73 -0.5 759,649 + Atu3685 0.74 -0.5 759,724 + Atu3685 0.84 -0.5 759,758 - Atu3685 0.89 +0.7 759,807 + +0.1 759,812 + -0.4 759,812 + -0.3 759,822 + -0.5 759,886 + -0.2 759,948 - +0.1 759,966 - Atu3686 0.11 +0.3 760,091 - Atu3686 0.25 -2.1 760,112 - Atu3686 0.27 +2.4 760,208 + Atu3686 0.38 -0.2 760,208 + Atu3686 0.38 -0.0 760,216 - Atu3686 0.39 -0.9 760,323 + Atu3686 0.51 -0.2 760,350 - Atu3686 0.54 -0.2 760,376 - Atu3686 0.57 -0.1 760,503 - Atu3686 0.71 -0.4 760,511 + Atu3686 0.72 -0.5 760,657 + Atu3686 0.88 -0.2 760,667 - Atu3686 0.89 -0.4 760,688 - -1.7 760,728 - -0.4
Or see this region's nucleotide sequence