Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0536 and Echvi_0537 are separated by 77 nucleotides Echvi_0537 and Echvi_0538 are separated by 116 nucleotides Echvi_0538 and Echvi_0539 overlap by 53 nucleotides Echvi_0539 and Echvi_0540 are separated by 219 nucleotides
Echvi_0536: Echvi_0536 - hypothetical protein, at 598,786 to 599,355
_0536
Echvi_0537: Echvi_0537 - hypothetical protein, at 599,433 to 600,113
_0537
Echvi_0538: Echvi_0538 - hypothetical protein, at 600,230 to 601,024
_0538
Echvi_0539: Echvi_0539 - Protein of unknown function (DUF3037)., at 600,972 to 601,379
_0539
Echvi_0540: Echvi_0540 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 601,599 to 603,032
_0540
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 599.312 kb on + strand at 599.442 kb on + strand at 599.442 kb on + strand at 599.443 kb on - strand at 599.450 kb on - strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.453 kb on - strand at 599.453 kb on - strand at 599.526 kb on + strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.550 kb on - strand, within Echvi_0537 at 599.555 kb on + strand, within Echvi_0537 at 599.556 kb on - strand, within Echvi_0537 at 599.606 kb on + strand, within Echvi_0537 at 599.631 kb on + strand at 599.631 kb on + strand, within Echvi_0537 at 599.631 kb on + strand, within Echvi_0537 at 599.632 kb on - strand, within Echvi_0537 at 599.698 kb on + strand, within Echvi_0537 at 599.698 kb on + strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.727 kb on + strand, within Echvi_0537 at 599.728 kb on - strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.787 kb on + strand, within Echvi_0537 at 599.788 kb on - strand, within Echvi_0537 at 599.889 kb on - strand, within Echvi_0537 at 599.889 kb on - strand, within Echvi_0537 at 599.892 kb on + strand, within Echvi_0537 at 599.892 kb on + strand, within Echvi_0537 at 599.958 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.985 kb on - strand, within Echvi_0537 at 599.987 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.075 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.137 kb on - strand at 600.137 kb on - strand at 600.137 kb on - strand at 600.156 kb on - strand at 600.156 kb on - strand at 600.164 kb on - strand at 600.164 kb on - strand at 600.180 kb on + strand at 600.181 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.191 kb on + strand at 600.221 kb on - strand at 600.227 kb on + strand at 600.334 kb on + strand at 600.335 kb on - strand, within Echvi_0538 at 600.335 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.445 kb on - strand, within Echvi_0538 at 600.507 kb on + strand, within Echvi_0538 at 600.508 kb on - strand, within Echvi_0538 at 600.585 kb on + strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.664 kb on + strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.960 kb on + strand at 600.960 kb on + strand at 601.019 kb on - strand at 601.020 kb on + strand at 601.020 kb on + strand at 601.021 kb on - strand at 601.027 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.114 kb on + strand, within Echvi_0539 at 601.151 kb on - strand, within Echvi_0539 at 601.156 kb on + strand, within Echvi_0539 at 601.157 kb on - strand, within Echvi_0539 at 601.175 kb on - strand, within Echvi_0539 at 601.175 kb on - strand, within Echvi_0539 at 601.241 kb on + strand, within Echvi_0539 at 601.241 kb on + strand, within Echvi_0539 at 601.245 kb on - strand, within Echvi_0539 at 601.332 kb on - strand, within Echvi_0539 at 601.372 kb on + strand at 601.372 kb on + strand at 601.373 kb on - strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.459 kb on + strand at 601.460 kb on - strand at 601.460 kb on - strand at 601.460 kb on - strand at 601.469 kb on + strand at 601.469 kb on + strand at 601.469 kb on + strand at 601.581 kb on + strand at 601.601 kb on - strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.628 kb on - strand at 601.632 kb on - strand at 601.721 kb on + strand at 601.722 kb on - strand at 601.722 kb on - strand at 601.764 kb on - strand, within Echvi_0540 at 601.807 kb on + strand, within Echvi_0540 at 601.859 kb on - strand, within Echvi_0540 at 601.859 kb on - strand, within Echvi_0540 at 601.889 kb on - strand, within Echvi_0540 at 601.947 kb on - strand, within Echvi_0540 at 601.984 kb on + strand, within Echvi_0540 at 601.984 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.987 kb on - strand, within Echvi_0540 at 601.987 kb on - strand, within Echvi_0540 at 602.015 kb on - strand, within Echvi_0540 at 602.024 kb on + strand, within Echvi_0540
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 599,312 + -0.4 599,442 + +0.4 599,442 + -0.4 599,443 - +0.5 599,450 - +0.4 599,452 + -0.6 599,452 + +0.1 599,452 + -0.4 599,452 + +0.0 599,453 - +1.1 599,453 - -2.1 599,526 + Echvi_0537 0.14 +1.5 599,548 - Echvi_0537 0.17 -0.5 599,548 - Echvi_0537 0.17 +0.9 599,549 + Echvi_0537 0.17 +0.2 599,549 + Echvi_0537 0.17 +0.4 599,550 - Echvi_0537 0.17 -0.3 599,555 + Echvi_0537 0.18 -0.4 599,556 - Echvi_0537 0.18 +0.6 599,606 + Echvi_0537 0.25 +0.3 599,631 + +1.9 599,631 + Echvi_0537 0.29 -0.6 599,631 + Echvi_0537 0.29 +1.4 599,632 - Echvi_0537 0.29 +0.2 599,698 + Echvi_0537 0.39 -0.8 599,698 + Echvi_0537 0.39 -0.2 599,699 - Echvi_0537 0.39 +0.5 599,699 - Echvi_0537 0.39 -0.4 599,699 - Echvi_0537 0.39 +0.1 599,727 + Echvi_0537 0.43 -0.1 599,728 - Echvi_0537 0.43 -0.1 599,739 + Echvi_0537 0.45 +0.3 599,739 + Echvi_0537 0.45 -1.2 599,739 + Echvi_0537 0.45 -0.0 599,740 - Echvi_0537 0.45 -0.2 599,740 - Echvi_0537 0.45 -1.0 599,740 - Echvi_0537 0.45 +0.3 599,751 - Echvi_0537 0.47 -2.0 599,751 - Echvi_0537 0.47 -0.1 599,751 - Echvi_0537 0.47 -0.2 599,787 + Echvi_0537 0.52 -0.9 599,788 - Echvi_0537 0.52 +0.3 599,889 - Echvi_0537 0.67 +0.0 599,889 - Echvi_0537 0.67 -0.1 599,892 + Echvi_0537 0.67 +0.4 599,892 + Echvi_0537 0.67 -1.1 599,958 - Echvi_0537 0.77 +0.4 599,978 - Echvi_0537 0.80 -0.8 599,978 - Echvi_0537 0.80 -0.9 599,978 - Echvi_0537 0.80 -1.2 599,985 - Echvi_0537 0.81 -0.4 599,987 + Echvi_0537 0.81 -0.1 600,032 + Echvi_0537 0.88 +0.9 600,032 + Echvi_0537 0.88 -0.9 600,032 + Echvi_0537 0.88 -2.1 600,032 + Echvi_0537 0.88 +0.6 600,033 - Echvi_0537 0.88 +0.2 600,033 - Echvi_0537 0.88 +1.8 600,033 - Echvi_0537 0.88 -1.6 600,075 - -0.1 600,135 - +0.5 600,135 - -1.3 600,135 - -0.6 600,135 - -0.1 600,136 + +0.1 600,136 + +0.6 600,136 + +1.4 600,136 + -0.1 600,137 - +1.2 600,137 - +0.5 600,137 - +0.4 600,156 - +0.0 600,156 - +1.6 600,164 - -1.5 600,164 - -1.2 600,180 + -0.9 600,181 - +0.1 600,183 - +0.4 600,183 - -0.1 600,183 - +0.4 600,183 - -0.1 600,191 + +0.9 600,221 - +0.6 600,227 + -0.3 600,334 + +3.5 600,335 - Echvi_0538 0.13 -0.3 600,335 - Echvi_0538 0.13 -0.4 600,339 - Echvi_0538 0.14 -1.2 600,339 - Echvi_0538 0.14 -1.5 600,339 - Echvi_0538 0.14 +0.7 600,445 - Echvi_0538 0.27 -0.4 600,507 + Echvi_0538 0.35 -0.1 600,508 - Echvi_0538 0.35 -0.5 600,585 + Echvi_0538 0.45 -1.5 600,586 - Echvi_0538 0.45 +0.5 600,586 - Echvi_0538 0.45 +0.4 600,586 - Echvi_0538 0.45 -1.4 600,586 - Echvi_0538 0.45 -0.9 600,586 - Echvi_0538 0.45 -0.4 600,664 + Echvi_0538 0.55 -0.6 600,942 - Echvi_0538 0.90 -0.4 600,942 - Echvi_0538 0.90 -0.7 600,960 + -0.1 600,960 + +1.2 601,019 - +0.1 601,020 + +0.1 601,020 + +0.4 601,021 - -0.4 601,027 - Echvi_0539 0.13 -0.6 601,079 - Echvi_0539 0.26 -0.6 601,079 - Echvi_0539 0.26 +1.6 601,114 + Echvi_0539 0.35 -0.1 601,151 - Echvi_0539 0.44 +0.9 601,156 + Echvi_0539 0.45 +1.9 601,157 - Echvi_0539 0.45 -0.9 601,175 - Echvi_0539 0.50 -0.1 601,175 - Echvi_0539 0.50 -0.1 601,241 + Echvi_0539 0.66 +1.9 601,241 + Echvi_0539 0.66 -1.1 601,245 - Echvi_0539 0.67 +0.6 601,332 - Echvi_0539 0.88 -0.1 601,372 + -0.2 601,372 + -1.0 601,373 - +0.5 601,377 + +0.7 601,377 + +0.1 601,377 + +0.3 601,377 + -0.6 601,378 - +0.2 601,378 - -1.3 601,378 - -0.9 601,378 - +0.0 601,459 + -0.8 601,460 - -0.6 601,460 - +1.9 601,460 - +1.1 601,469 + -0.3 601,469 + -0.1 601,469 + +0.2 601,581 + +0.5 601,601 - -0.3 601,627 + +0.4 601,627 + -0.2 601,627 + +0.6 601,627 + +0.7 601,627 + -0.1 601,628 - +0.2 601,632 - +0.6 601,721 + +0.7 601,722 - +0.5 601,722 - +1.9 601,764 - Echvi_0540 0.12 -0.9 601,807 + Echvi_0540 0.15 -0.4 601,859 - Echvi_0540 0.18 -0.4 601,859 - Echvi_0540 0.18 -1.2 601,889 - Echvi_0540 0.20 +0.5 601,947 - Echvi_0540 0.24 -0.4 601,984 + Echvi_0540 0.27 -0.6 601,984 + Echvi_0540 0.27 +0.3 601,986 + Echvi_0540 0.27 -2.0 601,986 + Echvi_0540 0.27 -0.8 601,986 + Echvi_0540 0.27 -0.1 601,987 - Echvi_0540 0.27 -1.7 601,987 - Echvi_0540 0.27 +0.1 602,015 - Echvi_0540 0.29 -1.4 602,024 + Echvi_0540 0.30 -2.0
Or see this region's nucleotide sequence