Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0416

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0415 and Echvi_0416 are separated by 337 nucleotidesEchvi_0416 and Echvi_0417 are separated by 162 nucleotidesEchvi_0417 and Echvi_0418 are separated by 234 nucleotides Echvi_0415: Echvi_0415 - Site-specific recombinase XerD, at 454,862 to 456,175 _0415 Echvi_0416: Echvi_0416 - Transposase and inactivated derivatives, at 456,513 to 457,412 _0416 Echvi_0417: Echvi_0417 - hypothetical protein, at 457,575 to 457,829 _0417 Echvi_0418: Echvi_0418 - Deoxycytidylate deaminase, at 458,064 to 459,644 _0418 Position (kb) 456 457 458Strain fitness (log2 ratio) -2 -1 0 1 2 3at 455.522 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.539 kb on + strand, within Echvi_0415at 455.582 kb on - strand, within Echvi_0415at 455.604 kb on - strand, within Echvi_0415at 455.638 kb on - strand, within Echvi_0415at 455.710 kb on + strand, within Echvi_0415at 455.710 kb on + strand, within Echvi_0415at 455.711 kb on - strand, within Echvi_0415at 455.749 kb on + strand, within Echvi_0415at 455.759 kb on - strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.779 kb on - strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.843 kb on + strand, within Echvi_0415at 455.859 kb on + strand, within Echvi_0415at 455.860 kb on - strand, within Echvi_0415at 455.911 kb on + strand, within Echvi_0415at 455.934 kb on + strand, within Echvi_0415at 455.945 kb on + strand, within Echvi_0415at 456.054 kb on - strandat 456.054 kb on - strandat 456.059 kb on + strandat 456.061 kb on + strandat 456.062 kb on - strandat 456.067 kb on + strandat 456.068 kb on - strandat 456.068 kb on - strandat 456.068 kb on - strandat 456.071 kb on + strandat 456.072 kb on - strandat 456.101 kb on + strandat 456.102 kb on - strandat 456.161 kb on + strandat 456.182 kb on + strandat 456.193 kb on - strandat 456.337 kb on - strandat 456.472 kb on - strandat 456.475 kb on - strandat 456.493 kb on - strandat 456.539 kb on - strandat 456.581 kb on + strandat 456.582 kb on - strandat 456.603 kb on - strand, within Echvi_0416at 456.643 kb on + strandat 456.699 kb on - strand, within Echvi_0416at 456.701 kb on + strand, within Echvi_0416at 456.702 kb on - strand, within Echvi_0416at 456.727 kb on + strand, within Echvi_0416at 456.728 kb on - strand, within Echvi_0416at 456.774 kb on - strand, within Echvi_0416at 456.774 kb on - strand, within Echvi_0416at 456.778 kb on + strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.783 kb on - strand, within Echvi_0416at 456.809 kb on - strand, within Echvi_0416at 456.902 kb on - strand, within Echvi_0416at 457.294 kb on + strand, within Echvi_0416at 457.326 kb on + strandat 457.327 kb on - strandat 457.334 kb on + strandat 457.334 kb on + strandat 457.423 kb on + strandat 457.423 kb on + strandat 457.423 kb on + strandat 457.423 kb on + strandat 457.424 kb on - strandat 457.424 kb on - strandat 457.424 kb on - strandat 457.425 kb on + strandat 457.426 kb on - strandat 457.426 kb on - strandat 457.426 kb on - strandat 457.426 kb on - strandat 457.456 kb on + strandat 457.476 kb on - strandat 457.555 kb on + strandat 457.577 kb on - strandat 457.650 kb on + strand, within Echvi_0417at 457.650 kb on + strand, within Echvi_0417at 457.667 kb on - strand, within Echvi_0417at 457.667 kb on - strand, within Echvi_0417at 457.667 kb on - strand, within Echvi_0417at 457.699 kb on + strand, within Echvi_0417at 457.716 kb on - strand, within Echvi_0417at 457.716 kb on - strand, within Echvi_0417at 457.718 kb on + strand, within Echvi_0417at 457.718 kb on + strand, within Echvi_0417at 457.738 kb on + strand, within Echvi_0417at 457.738 kb on + strand, within Echvi_0417at 457.741 kb on + strand, within Echvi_0417at 457.741 kb on + strand, within Echvi_0417at 457.741 kb on + strand, within Echvi_0417at 457.742 kb on - strand, within Echvi_0417at 457.742 kb on - strand, within Echvi_0417at 457.754 kb on + strand, within Echvi_0417at 457.755 kb on - strand, within Echvi_0417at 457.755 kb on - strand, within Echvi_0417at 457.757 kb on + strand, within Echvi_0417at 457.757 kb on + strand, within Echvi_0417at 457.758 kb on - strand, within Echvi_0417at 457.852 kb on + strandat 457.867 kb on + strandat 457.893 kb on - strandat 457.893 kb on - strandat 457.893 kb on - strandat 457.894 kb on + strandat 457.895 kb on - strandat 457.898 kb on - strandat 457.898 kb on - strandat 457.902 kb on + strandat 457.902 kb on + strandat 457.903 kb on - strandat 457.907 kb on - strandat 457.917 kb on + strandat 457.933 kb on - strandat 457.997 kb on - strandat 458.045 kb on - strandat 458.063 kb on + strandat 458.108 kb on + strandat 458.129 kb on + strandat 458.129 kb on + strandat 458.130 kb on - strandat 458.240 kb on - strand, within Echvi_0418at 458.240 kb on - strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.244 kb on + strand, within Echvi_0418at 458.248 kb on + strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.249 kb on - strand, within Echvi_0418at 458.250 kb on + strand, within Echvi_0418at 458.288 kb on - strand, within Echvi_0418at 458.290 kb on + strand, within Echvi_0418at 458.315 kb on + strand, within Echvi_0418at 458.356 kb on + strand, within Echvi_0418at 458.378 kb on + strandat 458.394 kb on + strand, within Echvi_0418at 458.394 kb on + strand, within Echvi_0418at 458.394 kb on + strand, within Echvi_0418at 458.395 kb on - strand, within Echvi_0418at 458.395 kb on - strand, within Echvi_0418at 458.408 kb on - strand, within Echvi_0418

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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455,522 + Echvi_0415 0.50 -0.8
455,531 + Echvi_0415 0.51 +0.0
455,531 + Echvi_0415 0.51 -0.3
455,531 + Echvi_0415 0.51 +0.6
455,531 + Echvi_0415 0.51 -0.9
455,531 + Echvi_0415 0.51 -0.7
455,531 + Echvi_0415 0.51 +0.4
455,531 + Echvi_0415 0.51 +0.4
455,532 - Echvi_0415 0.51 -0.1
455,532 - Echvi_0415 0.51 -0.6
455,532 - Echvi_0415 0.51 -0.7
455,539 + Echvi_0415 0.52 +0.4
455,582 - Echvi_0415 0.55 +0.1
455,604 - Echvi_0415 0.56 +0.2
455,638 - Echvi_0415 0.59 -0.9
455,710 + Echvi_0415 0.65 +0.4
455,710 + Echvi_0415 0.65 -1.2
455,711 - Echvi_0415 0.65 -0.4
455,749 + Echvi_0415 0.68 -0.5
455,759 - Echvi_0415 0.68 -0.2
455,760 + Echvi_0415 0.68 +0.5
455,760 + Echvi_0415 0.68 +0.1
455,760 + Echvi_0415 0.68 +0.6
455,760 + Echvi_0415 0.68 +1.3
455,760 + Echvi_0415 0.68 +0.5
455,760 + Echvi_0415 0.68 -0.3
455,761 - Echvi_0415 0.68 +1.2
455,761 - Echvi_0415 0.68 +0.2
455,761 - Echvi_0415 0.68 +0.6
455,761 - Echvi_0415 0.68 +0.1
455,779 - Echvi_0415 0.70 -0.3
455,832 + Echvi_0415 0.74 -1.2
455,832 + Echvi_0415 0.74 -0.4
455,832 + Echvi_0415 0.74 -0.6
455,833 - Echvi_0415 0.74 -0.2
455,833 - Echvi_0415 0.74 -0.5
455,833 - Echvi_0415 0.74 +0.2
455,837 - Echvi_0415 0.74 -1.4
455,837 - Echvi_0415 0.74 +2.9
455,837 - Echvi_0415 0.74 -0.2
455,843 + Echvi_0415 0.75 +0.6
455,859 + Echvi_0415 0.76 -0.9
455,860 - Echvi_0415 0.76 -0.9
455,911 + Echvi_0415 0.80 -1.1
455,934 + Echvi_0415 0.82 +0.9
455,945 + Echvi_0415 0.82 -2.3
456,054 - -0.4
456,054 - +0.5
456,059 + -0.7
456,061 + -0.4
456,062 - -0.2
456,067 + +0.2
456,068 - -0.8
456,068 - -0.8
456,068 - +0.1
456,071 + -1.0
456,072 - -1.7
456,101 + -1.3
456,102 - -0.5
456,161 + -1.0
456,182 + -0.5
456,193 - -0.5
456,337 - -0.2
456,472 - -0.3
456,475 - -2.0
456,493 - -0.9
456,539 - +0.2
456,581 + -1.5
456,582 - +0.2
456,603 - Echvi_0416 0.10 -1.0
456,643 + +1.5
456,699 - Echvi_0416 0.21 -0.1
456,701 + Echvi_0416 0.21 -0.5
456,702 - Echvi_0416 0.21 -0.2
456,727 + Echvi_0416 0.24 -1.0
456,728 - Echvi_0416 0.24 -1.0
456,774 - Echvi_0416 0.29 -0.7
456,774 - Echvi_0416 0.29 -1.0
456,778 + Echvi_0416 0.29 -0.1
456,779 - Echvi_0416 0.30 -2.7
456,779 - Echvi_0416 0.30 +0.2
456,779 - Echvi_0416 0.30 +0.0
456,779 - Echvi_0416 0.30 +0.6
456,779 - Echvi_0416 0.30 -0.5
456,783 - Echvi_0416 0.30 -1.2
456,809 - Echvi_0416 0.33 -0.3
456,902 - Echvi_0416 0.43 +0.9
457,294 + Echvi_0416 0.87 +0.3
457,326 + +0.3
457,327 - -0.4
457,334 + +0.0
457,334 + -0.1
457,423 + +0.9
457,423 + -0.4
457,423 + -2.4
457,423 + +0.8
457,424 - -0.5
457,424 - +1.5
457,424 - -0.1
457,425 + -0.4
457,426 - +0.0
457,426 - +0.8
457,426 - -1.1
457,426 - +0.2
457,456 + -0.8
457,476 - -1.6
457,555 + +0.5
457,577 - -0.4
457,650 + Echvi_0417 0.29 +1.7
457,650 + Echvi_0417 0.29 +0.8
457,667 - Echvi_0417 0.36 -0.6
457,667 - Echvi_0417 0.36 +0.6
457,667 - Echvi_0417 0.36 -0.1
457,699 + Echvi_0417 0.49 -1.4
457,716 - Echvi_0417 0.55 -0.2
457,716 - Echvi_0417 0.55 -0.1
457,718 + Echvi_0417 0.56 -0.1
457,718 + Echvi_0417 0.56 +0.3
457,738 + Echvi_0417 0.64 +0.5
457,738 + Echvi_0417 0.64 -1.0
457,741 + Echvi_0417 0.65 +0.6
457,741 + Echvi_0417 0.65 -0.5
457,741 + Echvi_0417 0.65 -0.2
457,742 - Echvi_0417 0.65 +1.2
457,742 - Echvi_0417 0.65 +0.1
457,754 + Echvi_0417 0.70 -0.3
457,755 - Echvi_0417 0.71 +0.3
457,755 - Echvi_0417 0.71 -0.4
457,757 + Echvi_0417 0.71 +0.9
457,757 + Echvi_0417 0.71 -0.7
457,758 - Echvi_0417 0.72 +1.7
457,852 + +1.2
457,867 + +0.3
457,893 - -0.9
457,893 - -0.6
457,893 - -1.3
457,894 + +0.5
457,895 - +0.3
457,898 - -0.5
457,898 - +1.1
457,902 + +0.5
457,902 + -0.9
457,903 - -0.3
457,907 - -0.0
457,917 + +0.4
457,933 - +2.3
457,997 - -0.6
458,045 - +0.1
458,063 + +0.6
458,108 + +1.0
458,129 + +0.1
458,129 + -0.8
458,130 - +0.8
458,240 - Echvi_0418 0.11 -2.5
458,240 - Echvi_0418 0.11 +1.2
458,244 + Echvi_0418 0.11 -0.5
458,244 + Echvi_0418 0.11 +0.1
458,244 + Echvi_0418 0.11 -0.8
458,244 + Echvi_0418 0.11 -0.1
458,248 + Echvi_0418 0.12 -2.5
458,249 - Echvi_0418 0.12 +1.8
458,249 - Echvi_0418 0.12 -0.3
458,249 - Echvi_0418 0.12 -0.0
458,249 - Echvi_0418 0.12 +0.6
458,250 + Echvi_0418 0.12 +0.3
458,288 - Echvi_0418 0.14 -0.4
458,290 + Echvi_0418 0.14 -0.1
458,315 + Echvi_0418 0.16 -0.7
458,356 + Echvi_0418 0.18 +2.2
458,378 + -0.7
458,394 + Echvi_0418 0.21 +0.1
458,394 + Echvi_0418 0.21 -1.2
458,394 + Echvi_0418 0.21 +0.3
458,395 - Echvi_0418 0.21 +0.7
458,395 - Echvi_0418 0.21 -0.6
458,408 - Echvi_0418 0.22 -1.3

Or see this region's nucleotide sequence