Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0220 and Echvi_0221 are separated by 3 nucleotides Echvi_0221 and Echvi_0222 are separated by 15 nucleotides Echvi_0222 and Echvi_0223 overlap by 20 nucleotides Echvi_0223 and Echvi_0224 are separated by 261 nucleotides
Echvi_0220: Echvi_0220 - cysteine synthase B, at 238,802 to 239,680
_0220
Echvi_0221: Echvi_0221 - Serine acetyltransferase, at 239,684 to 240,526
_0221
Echvi_0222: Echvi_0222 - hypothetical protein, at 240,542 to 241,114
_0222
Echvi_0223: Echvi_0223 - Septum formation initiator., at 241,095 to 241,382
_0223
Echvi_0224: Echvi_0224 - hypothetical protein, at 241,644 to 242,017
_0224
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 240.537 kb on - strand at 240.544 kb on - strand at 240.546 kb on - strand at 240.571 kb on - strand at 240.571 kb on - strand at 240.571 kb on - strand at 240.583 kb on - strand at 240.586 kb on + strand at 240.615 kb on + strand, within Echvi_0222 at 240.664 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.734 kb on - strand, within Echvi_0222 at 240.735 kb on + strand, within Echvi_0222 at 240.736 kb on - strand, within Echvi_0222 at 240.736 kb on - strand, within Echvi_0222 at 240.736 kb on - strand, within Echvi_0222 at 240.744 kb on - strand, within Echvi_0222 at 240.760 kb on - strand, within Echvi_0222 at 240.794 kb on - strand, within Echvi_0222 at 240.795 kb on + strand, within Echvi_0222 at 240.796 kb on - strand, within Echvi_0222 at 240.820 kb on - strand, within Echvi_0222 at 240.820 kb on - strand, within Echvi_0222 at 240.848 kb on - strand, within Echvi_0222 at 240.864 kb on + strand, within Echvi_0222 at 240.865 kb on - strand, within Echvi_0222 at 240.933 kb on + strand, within Echvi_0222 at 240.933 kb on + strand, within Echvi_0222 at 240.934 kb on - strand, within Echvi_0222 at 241.044 kb on - strand, within Echvi_0222 at 241.398 kb on - strand at 241.402 kb on - strand at 241.411 kb on - strand at 241.419 kb on + strand at 241.448 kb on + strand at 241.448 kb on + strand at 241.449 kb on - strand at 241.454 kb on - strand at 241.460 kb on + strand at 241.487 kb on + strand at 241.496 kb on + strand at 241.496 kb on + strand at 241.501 kb on - strand at 241.503 kb on + strand at 241.560 kb on + strand at 241.561 kb on - strand at 241.650 kb on + strand at 241.651 kb on - strand at 241.651 kb on - strand at 241.691 kb on + strand, within Echvi_0224 at 241.692 kb on - strand, within Echvi_0224 at 241.764 kb on - strand, within Echvi_0224 at 241.768 kb on - strand, within Echvi_0224 at 241.782 kb on - strand, within Echvi_0224 at 241.890 kb on + strand, within Echvi_0224 at 241.891 kb on - strand, within Echvi_0224 at 241.962 kb on + strand, within Echvi_0224 at 241.963 kb on - strand, within Echvi_0224 at 241.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 240,537 - +0.1 240,544 - +0.3 240,546 - -1.7 240,571 - +1.1 240,571 - -1.1 240,571 - -0.4 240,583 - +0.1 240,586 + +0.3 240,615 + Echvi_0222 0.13 -1.6 240,664 - Echvi_0222 0.21 -1.0 240,734 - Echvi_0222 0.34 +0.9 240,734 - Echvi_0222 0.34 -0.6 240,734 - Echvi_0222 0.34 -0.0 240,734 - Echvi_0222 0.34 +0.1 240,735 + Echvi_0222 0.34 +0.3 240,736 - Echvi_0222 0.34 -0.0 240,736 - Echvi_0222 0.34 -2.0 240,736 - Echvi_0222 0.34 +0.5 240,744 - Echvi_0222 0.35 +0.3 240,760 - Echvi_0222 0.38 -0.1 240,794 - Echvi_0222 0.44 -0.2 240,795 + Echvi_0222 0.44 +3.2 240,796 - Echvi_0222 0.44 +0.8 240,820 - Echvi_0222 0.49 -0.1 240,820 - Echvi_0222 0.49 -1.8 240,848 - Echvi_0222 0.53 +0.1 240,864 + Echvi_0222 0.56 +1.3 240,865 - Echvi_0222 0.56 -0.4 240,933 + Echvi_0222 0.68 -1.7 240,933 + Echvi_0222 0.68 -1.3 240,934 - Echvi_0222 0.68 -0.7 241,044 - Echvi_0222 0.88 -0.2 241,398 - +1.3 241,402 - +1.9 241,411 - +0.4 241,419 + +1.0 241,448 + +1.2 241,448 + -1.5 241,449 - +0.0 241,454 - +0.6 241,460 + +1.6 241,487 + +1.0 241,496 + -0.1 241,496 + -1.5 241,501 - -1.3 241,503 + +0.9 241,560 + +0.6 241,561 - -1.4 241,650 + -0.7 241,651 - +0.5 241,651 - -0.1 241,691 + Echvi_0224 0.13 -0.1 241,692 - Echvi_0224 0.13 +0.4 241,764 - Echvi_0224 0.32 -0.3 241,768 - Echvi_0224 0.33 -0.6 241,782 - Echvi_0224 0.37 +1.5 241,890 + Echvi_0224 0.66 -0.4 241,891 - Echvi_0224 0.66 +0.5 241,962 + Echvi_0224 0.85 -1.1 241,963 - Echvi_0224 0.85 +0.1 241,996 - -1.6
Or see this region's nucleotide sequence