Strain Fitness in Agrobacterium fabrum C58 around Atu6141

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6139 and Atu6140 are separated by 99 nucleotidesAtu6140 and Atu6141 overlap by 4 nucleotidesAtu6141 and Atu6142 overlap by 4 nucleotidesAtu6142 and Atu6143 overlap by 8 nucleotides Atu6139: Atu6139 - ABC transporter, substrate binding protein (agrocinopines A and B), at 158,298 to 159,863 Atu6139 Atu6140: Atu6140 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 159,963 to 160,862 Atu6140 Atu6141: Atu6141 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 160,859 to 161,878 Atu6141 Atu6142: Atu6142 - ABC transporter, membrane spanning protein (agrocinopine), at 161,875 to 162,801 Atu6142 Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654 Atu6143 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2 3at 159.906 kb on + strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.914 kb on - strandat 159.915 kb on - strandat 159.976 kb on + strandat 159.994 kb on - strandat 160.024 kb on + strandat 160.025 kb on + strandat 160.025 kb on - strandat 160.025 kb on - strandat 160.032 kb on - strandat 160.079 kb on + strand, within Atu6140at 160.125 kb on + strand, within Atu6140at 160.128 kb on - strand, within Atu6140at 160.135 kb on - strand, within Atu6140at 160.137 kb on + strand, within Atu6140at 160.189 kb on - strand, within Atu6140at 160.195 kb on + strand, within Atu6140at 160.195 kb on + strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.235 kb on - strand, within Atu6140at 160.267 kb on + strand, within Atu6140at 160.277 kb on + strand, within Atu6140at 160.285 kb on - strand, within Atu6140at 160.285 kb on - strand, within Atu6140at 160.295 kb on + strand, within Atu6140at 160.342 kb on + strand, within Atu6140at 160.360 kb on - strand, within Atu6140at 160.430 kb on + strand, within Atu6140at 160.438 kb on - strand, within Atu6140at 160.438 kb on - strand, within Atu6140at 160.503 kb on + strand, within Atu6140at 160.531 kb on + strand, within Atu6140at 160.531 kb on + strand, within Atu6140at 160.624 kb on + strand, within Atu6140at 160.634 kb on + strand, within Atu6140at 160.642 kb on - strand, within Atu6140at 160.684 kb on + strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.716 kb on + strand, within Atu6140at 160.716 kb on + strand, within Atu6140at 160.761 kb on + strand, within Atu6140at 160.773 kb on - strandat 160.773 kb on - strandat 160.817 kb on - strandat 160.840 kb on + strandat 160.848 kb on - strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.863 kb on - strandat 160.882 kb on - strandat 160.882 kb on - strandat 160.897 kb on + strandat 160.900 kb on - strandat 160.941 kb on + strandat 160.986 kb on + strand, within Atu6141at 161.013 kb on - strand, within Atu6141at 161.029 kb on + strand, within Atu6141at 161.029 kb on + strand, within Atu6141at 161.032 kb on - strand, within Atu6141at 161.037 kb on - strand, within Atu6141at 161.044 kb on - strand, within Atu6141at 161.053 kb on - strand, within Atu6141at 161.080 kb on - strand, within Atu6141at 161.108 kb on + strand, within Atu6141at 161.116 kb on - strand, within Atu6141at 161.226 kb on + strand, within Atu6141at 161.236 kb on - strand, within Atu6141at 161.277 kb on + strand, within Atu6141at 161.315 kb on - strand, within Atu6141at 161.323 kb on - strand, within Atu6141at 161.406 kb on - strand, within Atu6141at 161.501 kb on - strand, within Atu6141at 161.582 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.618 kb on + strand, within Atu6141at 161.628 kb on - strand, within Atu6141at 161.632 kb on - strand, within Atu6141at 161.637 kb on + strand, within Atu6141at 161.649 kb on - strand, within Atu6141at 161.658 kb on + strand, within Atu6141at 161.698 kb on + strand, within Atu6141at 161.706 kb on - strand, within Atu6141at 161.706 kb on - strand, within Atu6141at 161.808 kb on - strandat 161.808 kb on - strandat 161.810 kb on + strandat 161.847 kb on + strandat 162.029 kb on - strand, within Atu6142at 162.029 kb on - strand, within Atu6142at 162.031 kb on + strand, within Atu6142at 162.032 kb on + strand, within Atu6142at 162.037 kb on + strand, within Atu6142at 162.037 kb on + strand, within Atu6142at 162.039 kb on - strand, within Atu6142at 162.045 kb on - strand, within Atu6142at 162.045 kb on - strand, within Atu6142at 162.045 kb on - strand, within Atu6142at 162.045 kb on - strand, within Atu6142at 162.045 kb on - strand, within Atu6142at 162.045 kb on - strand, within Atu6142at 162.050 kb on - strand, within Atu6142at 162.050 kb on - strand, within Atu6142at 162.053 kb on + strand, within Atu6142at 162.061 kb on - strand, within Atu6142at 162.063 kb on + strand, within Atu6142at 162.071 kb on - strand, within Atu6142at 162.122 kb on + strand, within Atu6142at 162.138 kb on - strand, within Atu6142at 162.156 kb on + strand, within Atu6142at 162.270 kb on + strand, within Atu6142at 162.287 kb on + strand, within Atu6142at 162.288 kb on - strand, within Atu6142at 162.457 kb on - strand, within Atu6142at 162.459 kb on + strand, within Atu6142at 162.459 kb on + strand, within Atu6142at 162.467 kb on - strand, within Atu6142at 162.477 kb on + strand, within Atu6142at 162.477 kb on + strand, within Atu6142at 162.480 kb on - strand, within Atu6142at 162.613 kb on + strand, within Atu6142at 162.617 kb on - strand, within Atu6142at 162.630 kb on + strand, within Atu6142at 162.640 kb on + strand, within Atu6142at 162.711 kb on - strandat 162.726 kb on - strandat 162.771 kb on - strandat 162.851 kb on + strandat 162.861 kb on + strandat 162.861 kb on + strandat 162.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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159,906 + +0.1
159,907 + -0.1
159,907 + -0.0
159,914 - -1.6
159,915 - -0.8
159,976 + +0.7
159,994 - -0.3
160,024 + +0.3
160,025 + +0.9
160,025 - -0.1
160,025 - +0.1
160,032 - +0.7
160,079 + Atu6140 0.13 -0.4
160,125 + Atu6140 0.18 +0.1
160,128 - Atu6140 0.18 +0.4
160,135 - Atu6140 0.19 +0.0
160,137 + Atu6140 0.19 -0.2
160,189 - Atu6140 0.25 +0.3
160,195 + Atu6140 0.26 +0.6
160,195 + Atu6140 0.26 +0.1
160,203 - Atu6140 0.27 +0.1
160,203 - Atu6140 0.27 +0.4
160,203 - Atu6140 0.27 -0.0
160,235 - Atu6140 0.30 +0.7
160,267 + Atu6140 0.34 -0.3
160,277 + Atu6140 0.35 +0.5
160,285 - Atu6140 0.36 -0.7
160,285 - Atu6140 0.36 -0.2
160,295 + Atu6140 0.37 +0.9
160,342 + Atu6140 0.42 +0.1
160,360 - Atu6140 0.44 +2.3
160,430 + Atu6140 0.52 -0.1
160,438 - Atu6140 0.53 +1.1
160,438 - Atu6140 0.53 -1.0
160,503 + Atu6140 0.60 +0.9
160,531 + Atu6140 0.63 +0.4
160,531 + Atu6140 0.63 +0.1
160,624 + Atu6140 0.73 +0.0
160,634 + Atu6140 0.75 -0.5
160,642 - Atu6140 0.75 +0.3
160,684 + Atu6140 0.80 -0.2
160,692 - Atu6140 0.81 +0.3
160,692 - Atu6140 0.81 +0.6
160,692 - Atu6140 0.81 -0.7
160,716 + Atu6140 0.84 -0.2
160,716 + Atu6140 0.84 +1.5
160,761 + Atu6140 0.89 +0.8
160,773 - +0.6
160,773 - -0.9
160,817 - +0.2
160,840 + +0.3
160,848 - -0.9
160,855 + +3.3
160,855 + -0.1
160,855 + +0.1
160,855 + +0.1
160,855 + +0.2
160,855 + +1.2
160,863 - -0.4
160,882 - +0.2
160,882 - +0.4
160,897 + +1.0
160,900 - +0.4
160,941 + +0.4
160,986 + Atu6141 0.12 +0.3
161,013 - Atu6141 0.15 -0.2
161,029 + Atu6141 0.17 +0.1
161,029 + Atu6141 0.17 -0.0
161,032 - Atu6141 0.17 +0.0
161,037 - Atu6141 0.17 -0.9
161,044 - Atu6141 0.18 -0.4
161,053 - Atu6141 0.19 -0.1
161,080 - Atu6141 0.22 +0.5
161,108 + Atu6141 0.24 -0.1
161,116 - Atu6141 0.25 -1.9
161,226 + Atu6141 0.36 -1.0
161,236 - Atu6141 0.37 -1.9
161,277 + Atu6141 0.41 +0.4
161,315 - Atu6141 0.45 -0.2
161,323 - Atu6141 0.45 -0.5
161,406 - Atu6141 0.54 +0.1
161,501 - Atu6141 0.63 +0.9
161,582 + Atu6141 0.71 -0.3
161,603 + Atu6141 0.73 -0.4
161,603 + Atu6141 0.73 -0.5
161,603 + Atu6141 0.73 -0.0
161,603 + Atu6141 0.73 +0.7
161,603 + Atu6141 0.73 +0.5
161,603 + Atu6141 0.73 -0.3
161,611 - Atu6141 0.74 -0.3
161,611 - Atu6141 0.74 -0.3
161,611 - Atu6141 0.74 +1.0
161,611 - Atu6141 0.74 +1.7
161,618 + Atu6141 0.74 -0.5
161,628 - Atu6141 0.75 -0.7
161,632 - Atu6141 0.76 -0.3
161,637 + Atu6141 0.76 -0.1
161,649 - Atu6141 0.77 -1.7
161,658 + Atu6141 0.78 +0.7
161,698 + Atu6141 0.82 -0.5
161,706 - Atu6141 0.83 -0.1
161,706 - Atu6141 0.83 +0.3
161,808 - -0.1
161,808 - +0.4
161,810 + +0.0
161,847 + +0.4
162,029 - Atu6142 0.17 +0.4
162,029 - Atu6142 0.17 -0.2
162,031 + Atu6142 0.17 -0.1
162,032 + Atu6142 0.17 +0.7
162,037 + Atu6142 0.17 -0.2
162,037 + Atu6142 0.17 +0.2
162,039 - Atu6142 0.18 +0.0
162,045 - Atu6142 0.18 -0.1
162,045 - Atu6142 0.18 -0.9
162,045 - Atu6142 0.18 -0.2
162,045 - Atu6142 0.18 -0.1
162,045 - Atu6142 0.18 +0.1
162,045 - Atu6142 0.18 +0.2
162,050 - Atu6142 0.19 +0.7
162,050 - Atu6142 0.19 -0.4
162,053 + Atu6142 0.19 +1.5
162,061 - Atu6142 0.20 -1.9
162,063 + Atu6142 0.20 +0.1
162,071 - Atu6142 0.21 -1.9
162,122 + Atu6142 0.27 +0.3
162,138 - Atu6142 0.28 -0.2
162,156 + Atu6142 0.30 -0.0
162,270 + Atu6142 0.43 +1.0
162,287 + Atu6142 0.44 +0.2
162,288 - Atu6142 0.45 +0.9
162,457 - Atu6142 0.63 -0.2
162,459 + Atu6142 0.63 +0.2
162,459 + Atu6142 0.63 +0.5
162,467 - Atu6142 0.64 -0.9
162,477 + Atu6142 0.65 +0.1
162,477 + Atu6142 0.65 +0.5
162,480 - Atu6142 0.65 +0.1
162,613 + Atu6142 0.80 +0.1
162,617 - Atu6142 0.80 +0.4
162,630 + Atu6142 0.81 +0.1
162,640 + Atu6142 0.83 -0.2
162,711 - +0.1
162,726 - -0.2
162,771 - +1.0
162,851 + -1.1
162,861 + +1.1
162,861 + +0.1
162,869 - +0.2

Or see this region's nucleotide sequence