Strain Fitness in Agrobacterium fabrum C58 around Atu6115

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6113 and Atu6114 are separated by 13 nucleotidesAtu6114 and Atu6115 are separated by 80 nucleotidesAtu6115 and Atu6116 are separated by 62 nucleotides Atu6113: Atu6113 - conserved hypothetical protein, at 134,304 to 134,882 Atu6113 Atu6114: Atu6114 - hypothetical protein, at 134,896 to 135,138 Atu6114 Atu6115: Atu6115 - conserved hypothetical protein, at 135,219 to 136,625 Atu6115 Atu6116: Atu6116 - conserved hypothetical protein, at 136,688 to 137,539 Atu6116 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.223 kb on - strandat 134.223 kb on - strandat 134.246 kb on - strandat 134.348 kb on + strandat 134.362 kb on + strand, within Atu6113at 134.365 kb on - strand, within Atu6113at 134.365 kb on - strand, within Atu6113at 134.365 kb on - strand, within Atu6113at 134.434 kb on + strand, within Atu6113at 134.442 kb on - strand, within Atu6113at 134.515 kb on + strand, within Atu6113at 134.566 kb on - strand, within Atu6113at 134.566 kb on - strand, within Atu6113at 134.576 kb on - strand, within Atu6113at 134.751 kb on + strand, within Atu6113at 134.754 kb on - strand, within Atu6113at 134.847 kb on + strandat 134.852 kb on + strandat 134.983 kb on + strand, within Atu6114at 135.030 kb on - strand, within Atu6114at 135.093 kb on + strand, within Atu6114at 135.165 kb on - strandat 135.171 kb on + strandat 135.171 kb on + strandat 135.179 kb on - strandat 135.179 kb on - strandat 135.185 kb on + strandat 135.237 kb on - strandat 135.274 kb on + strandat 135.283 kb on + strandat 135.359 kb on - strandat 135.361 kb on + strand, within Atu6115at 135.489 kb on - strand, within Atu6115at 135.559 kb on - strand, within Atu6115at 135.670 kb on + strand, within Atu6115at 135.670 kb on + strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.678 kb on - strand, within Atu6115at 135.729 kb on - strand, within Atu6115at 135.732 kb on + strand, within Atu6115at 135.740 kb on + strand, within Atu6115at 135.786 kb on + strand, within Atu6115at 135.818 kb on - strand, within Atu6115at 135.836 kb on - strand, within Atu6115at 135.931 kb on + strand, within Atu6115at 135.974 kb on - strand, within Atu6115at 135.974 kb on - strand, within Atu6115at 136.053 kb on - strand, within Atu6115at 136.053 kb on - strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.106 kb on - strand, within Atu6115at 136.167 kb on - strand, within Atu6115at 136.271 kb on - strand, within Atu6115at 136.362 kb on + strand, within Atu6115at 136.425 kb on + strand, within Atu6115at 136.499 kb on - strandat 136.587 kb on - strandat 136.665 kb on - strandat 136.738 kb on + strandat 136.807 kb on + strand, within Atu6116at 136.889 kb on + strand, within Atu6116at 136.890 kb on - strand, within Atu6116at 136.897 kb on - strand, within Atu6116at 136.897 kb on - strand, within Atu6116at 136.897 kb on - strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.917 kb on - strand, within Atu6116at 136.917 kb on - strand, within Atu6116at 136.918 kb on - strand, within Atu6116at 136.918 kb on - strand, within Atu6116at 136.943 kb on - strand, within Atu6116at 137.026 kb on + strand, within Atu6116at 137.026 kb on - strand, within Atu6116at 137.143 kb on + strand, within Atu6116at 137.161 kb on - strand, within Atu6116at 137.180 kb on + strand, within Atu6116at 137.195 kb on - strand, within Atu6116at 137.204 kb on + strand, within Atu6116at 137.204 kb on + strand, within Atu6116at 137.238 kb on - strand, within Atu6116at 137.240 kb on + strand, within Atu6116at 137.350 kb on + strand, within Atu6116at 137.352 kb on + strand, within Atu6116at 137.370 kb on - strand, within Atu6116at 137.377 kb on + strand, within Atu6116at 137.428 kb on - strand, within Atu6116at 137.480 kb on - strandat 137.584 kb on - strandat 137.586 kb on + strandat 137.586 kb on - strandat 137.586 kb on - strandat 137.586 kb on - strandat 137.601 kb on + strandat 137.610 kb on - strandat 137.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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134,223 - +1.7
134,223 - -0.3
134,246 - -0.4
134,348 + +0.1
134,362 + Atu6113 0.10 -0.0
134,365 - Atu6113 0.11 -0.0
134,365 - Atu6113 0.11 +0.1
134,365 - Atu6113 0.11 +0.0
134,434 + Atu6113 0.22 +1.7
134,442 - Atu6113 0.24 -0.2
134,515 + Atu6113 0.36 -0.1
134,566 - Atu6113 0.45 -1.4
134,566 - Atu6113 0.45 -0.5
134,576 - Atu6113 0.47 -0.9
134,751 + Atu6113 0.77 -0.1
134,754 - Atu6113 0.78 -0.6
134,847 + +0.1
134,852 + -0.0
134,983 + Atu6114 0.36 -2.9
135,030 - Atu6114 0.55 -1.9
135,093 + Atu6114 0.81 -2.2
135,165 - +0.7
135,171 + -0.9
135,171 + -0.2
135,179 - +0.3
135,179 - -0.1
135,185 + +0.5
135,237 - -0.5
135,274 + +2.1
135,283 + -0.1
135,359 - +0.1
135,361 + Atu6115 0.10 +1.4
135,489 - Atu6115 0.19 -0.3
135,559 - Atu6115 0.24 -0.4
135,670 + Atu6115 0.32 +0.1
135,670 + Atu6115 0.32 +0.5
135,678 - Atu6115 0.33 +0.8
135,678 - Atu6115 0.33 +2.7
135,678 - Atu6115 0.33 -0.2
135,678 - Atu6115 0.33 +0.5
135,729 - Atu6115 0.36 +0.9
135,732 + Atu6115 0.36 -0.1
135,740 + Atu6115 0.37 +0.2
135,786 + Atu6115 0.40 -0.0
135,818 - Atu6115 0.43 -0.1
135,836 - Atu6115 0.44 -0.7
135,931 + Atu6115 0.51 -0.1
135,974 - Atu6115 0.54 +0.1
135,974 - Atu6115 0.54 -0.6
136,053 - Atu6115 0.59 +0.7
136,053 - Atu6115 0.59 -0.5
136,091 + Atu6115 0.62 +0.5
136,091 + Atu6115 0.62 -0.4
136,091 + Atu6115 0.62 +0.1
136,099 - Atu6115 0.63 +0.2
136,099 - Atu6115 0.63 +0.3
136,099 - Atu6115 0.63 +0.5
136,106 - Atu6115 0.63 +0.0
136,167 - Atu6115 0.67 -0.1
136,271 - Atu6115 0.75 +0.3
136,362 + Atu6115 0.81 +1.0
136,425 + Atu6115 0.86 -0.5
136,499 - +0.5
136,587 - +2.1
136,665 - +0.0
136,738 + +0.9
136,807 + Atu6116 0.14 +1.0
136,889 + Atu6116 0.24 +0.1
136,890 - Atu6116 0.24 -0.1
136,897 - Atu6116 0.25 -0.7
136,897 - Atu6116 0.25 -0.1
136,897 - Atu6116 0.25 -0.3
136,910 + Atu6116 0.26 +0.1
136,910 + Atu6116 0.26 +0.2
136,910 + Atu6116 0.26 +0.2
136,910 + Atu6116 0.26 +0.8
136,910 + Atu6116 0.26 -0.9
136,917 - Atu6116 0.27 +1.1
136,917 - Atu6116 0.27 +0.4
136,918 - Atu6116 0.27 -2.2
136,918 - Atu6116 0.27 +1.0
136,943 - Atu6116 0.30 +0.0
137,026 + Atu6116 0.40 -0.5
137,026 - Atu6116 0.40 +0.9
137,143 + Atu6116 0.53 +0.9
137,161 - Atu6116 0.56 -0.1
137,180 + Atu6116 0.58 -0.2
137,195 - Atu6116 0.60 -0.2
137,204 + Atu6116 0.61 -1.5
137,204 + Atu6116 0.61 -0.8
137,238 - Atu6116 0.65 +1.1
137,240 + Atu6116 0.65 -0.2
137,350 + Atu6116 0.78 +0.6
137,352 + Atu6116 0.78 -2.1
137,370 - Atu6116 0.80 -0.3
137,377 + Atu6116 0.81 -0.0
137,428 - Atu6116 0.87 +0.7
137,480 - +0.1
137,584 - +0.4
137,586 + -0.2
137,586 - +0.3
137,586 - +0.1
137,586 - -0.0
137,601 + -0.5
137,610 - +0.5
137,617 + -0.3

Or see this region's nucleotide sequence