Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6112 and Atu6113 are separated by 91 nucleotides Atu6113 and Atu6114 are separated by 13 nucleotides Atu6114 and Atu6115 are separated by 80 nucleotides
Atu6112: Atu6112 - conserved hypothetical protein, at 133,562 to 134,212
Atu6112
Atu6113: Atu6113 - conserved hypothetical protein, at 134,304 to 134,882
Atu6113
Atu6114: Atu6114 - hypothetical protein, at 134,896 to 135,138
Atu6114
Atu6115: Atu6115 - conserved hypothetical protein, at 135,219 to 136,625
Atu6115
Position (kb) 134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.068 kb on - strand, within Atu6112 at 134.124 kb on + strand, within Atu6112 at 134.145 kb on - strand, within Atu6112 at 134.154 kb on - strand at 134.215 kb on + strand at 134.223 kb on - strand at 134.223 kb on - strand at 134.246 kb on - strand at 134.348 kb on + strand at 134.362 kb on + strand, within Atu6113 at 134.365 kb on - strand, within Atu6113 at 134.365 kb on - strand, within Atu6113 at 134.365 kb on - strand, within Atu6113 at 134.434 kb on + strand, within Atu6113 at 134.442 kb on - strand, within Atu6113 at 134.515 kb on + strand, within Atu6113 at 134.566 kb on - strand, within Atu6113 at 134.566 kb on - strand, within Atu6113 at 134.576 kb on - strand, within Atu6113 at 134.751 kb on + strand, within Atu6113 at 134.754 kb on - strand, within Atu6113 at 134.847 kb on + strand at 134.852 kb on + strand at 134.983 kb on + strand, within Atu6114 at 135.030 kb on - strand, within Atu6114 at 135.093 kb on + strand, within Atu6114 at 135.165 kb on - strand at 135.171 kb on + strand at 135.171 kb on + strand at 135.179 kb on - strand at 135.179 kb on - strand at 135.185 kb on + strand at 135.237 kb on - strand at 135.274 kb on + strand at 135.283 kb on + strand at 135.359 kb on - strand at 135.361 kb on + strand, within Atu6115 at 135.489 kb on - strand, within Atu6115 at 135.559 kb on - strand, within Atu6115 at 135.670 kb on + strand, within Atu6115 at 135.670 kb on + strand, within Atu6115 at 135.678 kb on - strand, within Atu6115 at 135.678 kb on - strand, within Atu6115 at 135.678 kb on - strand, within Atu6115 at 135.678 kb on - strand, within Atu6115 at 135.729 kb on - strand, within Atu6115 at 135.732 kb on + strand, within Atu6115 at 135.740 kb on + strand, within Atu6115 at 135.786 kb on + strand, within Atu6115 at 135.818 kb on - strand, within Atu6115 at 135.836 kb on - strand, within Atu6115 at 135.931 kb on + strand, within Atu6115 at 135.974 kb on - strand, within Atu6115 at 135.974 kb on - strand, within Atu6115 at 136.053 kb on - strand, within Atu6115 at 136.053 kb on - strand, within Atu6115 at 136.091 kb on + strand, within Atu6115 at 136.091 kb on + strand, within Atu6115 at 136.091 kb on + strand, within Atu6115 at 136.099 kb on - strand, within Atu6115 at 136.099 kb on - strand, within Atu6115 at 136.099 kb on - strand, within Atu6115 at 136.106 kb on - strand, within Atu6115
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 134,068 - Atu6112 0.78 +0.9 134,124 + Atu6112 0.86 +0.5 134,145 - Atu6112 0.90 -2.4 134,154 - +0.1 134,215 + -0.6 134,223 - +1.7 134,223 - -0.3 134,246 - -0.4 134,348 + +0.1 134,362 + Atu6113 0.10 -0.0 134,365 - Atu6113 0.11 -0.0 134,365 - Atu6113 0.11 +0.1 134,365 - Atu6113 0.11 +0.0 134,434 + Atu6113 0.22 +1.7 134,442 - Atu6113 0.24 -0.2 134,515 + Atu6113 0.36 -0.1 134,566 - Atu6113 0.45 -1.4 134,566 - Atu6113 0.45 -0.5 134,576 - Atu6113 0.47 -0.9 134,751 + Atu6113 0.77 -0.1 134,754 - Atu6113 0.78 -0.6 134,847 + +0.1 134,852 + -0.0 134,983 + Atu6114 0.36 -2.9 135,030 - Atu6114 0.55 -1.9 135,093 + Atu6114 0.81 -2.2 135,165 - +0.7 135,171 + -0.9 135,171 + -0.2 135,179 - +0.3 135,179 - -0.1 135,185 + +0.5 135,237 - -0.5 135,274 + +2.1 135,283 + -0.1 135,359 - +0.1 135,361 + Atu6115 0.10 +1.4 135,489 - Atu6115 0.19 -0.3 135,559 - Atu6115 0.24 -0.4 135,670 + Atu6115 0.32 +0.1 135,670 + Atu6115 0.32 +0.5 135,678 - Atu6115 0.33 +0.8 135,678 - Atu6115 0.33 +2.7 135,678 - Atu6115 0.33 -0.2 135,678 - Atu6115 0.33 +0.5 135,729 - Atu6115 0.36 +0.9 135,732 + Atu6115 0.36 -0.1 135,740 + Atu6115 0.37 +0.2 135,786 + Atu6115 0.40 -0.0 135,818 - Atu6115 0.43 -0.1 135,836 - Atu6115 0.44 -0.7 135,931 + Atu6115 0.51 -0.1 135,974 - Atu6115 0.54 +0.1 135,974 - Atu6115 0.54 -0.6 136,053 - Atu6115 0.59 +0.7 136,053 - Atu6115 0.59 -0.5 136,091 + Atu6115 0.62 +0.5 136,091 + Atu6115 0.62 -0.4 136,091 + Atu6115 0.62 +0.1 136,099 - Atu6115 0.63 +0.2 136,099 - Atu6115 0.63 +0.3 136,099 - Atu6115 0.63 +0.5 136,106 - Atu6115 0.63 +0.0
Or see this region's nucleotide sequence