Strain Fitness in Agrobacterium fabrum C58 around Atu5020

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5018 and Atu5019 are separated by 25 nucleotidesAtu5019 and Atu5020 overlap by 4 nucleotidesAtu5020 and Atu5021 overlap by 4 nucleotidesAtu5021 and Atu5022 overlap by 1 nucleotides Atu5018: Atu5018 - hypothetical protein, at 18,384 to 19,208 Atu5018 Atu5019: Atu5019 - hypothetical protein, at 19,234 to 20,004 Atu5019 Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335 Atu5020 Atu5021: Atu5021 - hypothetical protein, at 21,332 to 22,228 Atu5021 Atu5022: Atu5022 - hypothetical protein, at 22,228 to 24,126 Atu5022 Position (kb) 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 19.013 kb on + strand, within Atu5018at 19.061 kb on - strand, within Atu5018at 19.074 kb on + strand, within Atu5018at 19.162 kb on + strandat 19.170 kb on - strandat 19.293 kb on - strandat 19.330 kb on - strand, within Atu5019at 19.467 kb on + strand, within Atu5019at 19.468 kb on + strand, within Atu5019at 19.494 kb on + strand, within Atu5019at 19.631 kb on - strand, within Atu5019at 19.653 kb on - strand, within Atu5019at 19.653 kb on - strand, within Atu5019at 19.655 kb on + strand, within Atu5019at 19.665 kb on + strand, within Atu5019at 19.673 kb on - strand, within Atu5019at 19.673 kb on - strand, within Atu5019at 19.703 kb on + strand, within Atu5019at 19.711 kb on - strand, within Atu5019at 19.718 kb on - strand, within Atu5019at 19.723 kb on + strand, within Atu5019at 19.739 kb on - strand, within Atu5019at 19.784 kb on - strand, within Atu5019at 19.849 kb on - strand, within Atu5019at 19.871 kb on + strand, within Atu5019at 19.912 kb on - strand, within Atu5019at 19.936 kb on - strandat 19.970 kb on + strandat 19.977 kb on + strandat 19.982 kb on + strandat 19.990 kb on - strandat 19.992 kb on + strandat 20.039 kb on + strandat 20.047 kb on - strandat 20.047 kb on - strandat 20.047 kb on - strandat 20.098 kb on + strandat 20.106 kb on - strandat 20.124 kb on + strandat 20.158 kb on + strand, within Atu5020at 20.158 kb on + strand, within Atu5020at 20.166 kb on - strand, within Atu5020at 20.186 kb on - strand, within Atu5020at 20.262 kb on + strand, within Atu5020at 20.262 kb on + strand, within Atu5020at 20.290 kb on - strand, within Atu5020at 20.312 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.352 kb on - strand, within Atu5020at 20.352 kb on - strand, within Atu5020at 20.352 kb on - strand, within Atu5020at 20.403 kb on - strand, within Atu5020at 20.428 kb on + strand, within Atu5020at 20.429 kb on - strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.477 kb on + strand, within Atu5020at 20.485 kb on - strand, within Atu5020at 20.485 kb on - strand, within Atu5020at 20.499 kb on - strand, within Atu5020at 20.523 kb on - strand, within Atu5020at 20.538 kb on + strand, within Atu5020at 20.546 kb on - strand, within Atu5020at 20.546 kb on - strand, within Atu5020at 20.637 kb on + strand, within Atu5020at 20.637 kb on + strand, within Atu5020at 20.637 kb on + strand, within Atu5020at 20.652 kb on + strand, within Atu5020at 20.660 kb on - strand, within Atu5020at 20.675 kb on + strand, within Atu5020at 20.683 kb on - strand, within Atu5020at 20.683 kb on - strand, within Atu5020at 20.694 kb on + strand, within Atu5020at 20.714 kb on + strand, within Atu5020at 20.722 kb on + strand, within Atu5020at 20.722 kb on - strand, within Atu5020at 20.724 kb on + strand, within Atu5020at 20.811 kb on - strand, within Atu5020at 20.823 kb on + strand, within Atu5020at 20.831 kb on - strand, within Atu5020at 20.832 kb on - strand, within Atu5020at 20.863 kb on + strand, within Atu5020at 20.883 kb on - strand, within Atu5020at 20.889 kb on + strand, within Atu5020at 20.895 kb on - strand, within Atu5020at 20.941 kb on - strand, within Atu5020at 20.969 kb on + strand, within Atu5020at 21.064 kb on - strand, within Atu5020at 21.171 kb on + strand, within Atu5020at 21.173 kb on - strand, within Atu5020at 21.193 kb on - strand, within Atu5020at 21.230 kb on + strandat 21.233 kb on - strandat 21.250 kb on + strandat 21.308 kb on + strandat 21.313 kb on + strandat 21.316 kb on - strandat 21.316 kb on - strandat 21.410 kb on + strandat 21.418 kb on - strandat 21.434 kb on - strand, within Atu5021at 21.458 kb on - strand, within Atu5021at 21.497 kb on + strand, within Atu5021at 21.505 kb on - strand, within Atu5021at 21.507 kb on + strand, within Atu5021at 21.520 kb on - strand, within Atu5021at 21.520 kb on - strand, within Atu5021at 21.557 kb on - strand, within Atu5021at 21.619 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.660 kb on - strand, within Atu5021at 21.660 kb on - strand, within Atu5021at 21.684 kb on - strand, within Atu5021at 21.707 kb on + strand, within Atu5021at 21.725 kb on - strand, within Atu5021at 21.766 kb on - strand, within Atu5021at 21.843 kb on - strand, within Atu5021at 21.879 kb on - strand, within Atu5021at 22.128 kb on - strand, within Atu5021at 22.130 kb on - strand, within Atu5021at 22.167 kb on + strandat 22.252 kb on + strandat 22.252 kb on + strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.275 kb on + strandat 22.281 kb on + strandat 22.299 kb on + strandat 22.299 kb on + strandat 22.321 kb on + strandat 22.332 kb on + strandat 22.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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19,013 + Atu5018 0.76 +1.0
19,061 - Atu5018 0.82 -0.0
19,074 + Atu5018 0.84 +0.7
19,162 + +0.7
19,170 - -0.4
19,293 - +0.8
19,330 - Atu5019 0.12 -0.5
19,467 + Atu5019 0.30 +1.0
19,468 + Atu5019 0.30 -0.8
19,494 + Atu5019 0.34 +0.0
19,631 - Atu5019 0.51 +0.0
19,653 - Atu5019 0.54 -0.1
19,653 - Atu5019 0.54 -0.1
19,655 + Atu5019 0.55 -0.2
19,665 + Atu5019 0.56 +0.2
19,673 - Atu5019 0.57 -0.1
19,673 - Atu5019 0.57 +0.4
19,703 + Atu5019 0.61 -0.3
19,711 - Atu5019 0.62 -0.5
19,718 - Atu5019 0.63 -0.1
19,723 + Atu5019 0.63 -0.6
19,739 - Atu5019 0.65 -1.4
19,784 - Atu5019 0.71 -0.5
19,849 - Atu5019 0.80 +1.1
19,871 + Atu5019 0.83 +0.2
19,912 - Atu5019 0.88 +0.8
19,936 - +0.2
19,970 + -0.8
19,977 + +0.4
19,982 + -0.1
19,990 - -0.0
19,992 + -0.2
20,039 + -0.1
20,047 - -0.2
20,047 - -0.5
20,047 - +0.3
20,098 + -0.4
20,106 - -0.6
20,124 + -0.5
20,158 + Atu5020 0.12 -1.0
20,158 + Atu5020 0.12 -0.0
20,166 - Atu5020 0.12 -0.2
20,186 - Atu5020 0.14 -0.1
20,262 + Atu5020 0.20 +0.3
20,262 + Atu5020 0.20 -0.3
20,290 - Atu5020 0.22 -0.3
20,312 + Atu5020 0.23 -0.1
20,344 + Atu5020 0.26 -1.2
20,344 + Atu5020 0.26 +0.2
20,344 + Atu5020 0.26 -1.0
20,344 + Atu5020 0.26 -0.5
20,352 - Atu5020 0.26 -0.2
20,352 - Atu5020 0.26 +0.2
20,352 - Atu5020 0.26 +0.0
20,403 - Atu5020 0.30 -0.0
20,428 + Atu5020 0.32 +0.1
20,429 - Atu5020 0.32 -0.2
20,440 + Atu5020 0.33 +0.0
20,440 + Atu5020 0.33 -0.7
20,440 + Atu5020 0.33 -0.5
20,440 + Atu5020 0.33 -0.5
20,477 + Atu5020 0.36 +0.2
20,485 - Atu5020 0.36 -0.4
20,485 - Atu5020 0.36 -0.2
20,499 - Atu5020 0.37 -1.3
20,523 - Atu5020 0.39 -2.8
20,538 + Atu5020 0.40 -0.9
20,546 - Atu5020 0.41 +0.2
20,546 - Atu5020 0.41 +1.8
20,637 + Atu5020 0.48 +0.2
20,637 + Atu5020 0.48 -1.3
20,637 + Atu5020 0.48 -0.1
20,652 + Atu5020 0.49 +1.2
20,660 - Atu5020 0.49 +0.2
20,675 + Atu5020 0.50 -0.5
20,683 - Atu5020 0.51 -0.2
20,683 - Atu5020 0.51 -0.7
20,694 + Atu5020 0.52 -0.0
20,714 + Atu5020 0.53 +0.5
20,722 + Atu5020 0.54 +1.8
20,722 - Atu5020 0.54 -0.8
20,724 + Atu5020 0.54 +0.2
20,811 - Atu5020 0.61 -0.4
20,823 + Atu5020 0.62 -0.4
20,831 - Atu5020 0.62 -0.9
20,832 - Atu5020 0.62 -0.2
20,863 + Atu5020 0.65 -1.1
20,883 - Atu5020 0.66 -0.4
20,889 + Atu5020 0.67 +0.0
20,895 - Atu5020 0.67 +0.5
20,941 - Atu5020 0.70 -1.0
20,969 + Atu5020 0.73 -0.0
21,064 - Atu5020 0.80 +0.2
21,171 + Atu5020 0.88 -0.5
21,173 - Atu5020 0.88 -0.4
21,193 - Atu5020 0.89 -1.0
21,230 + +0.6
21,233 - +0.9
21,250 + -0.2
21,308 + -0.4
21,313 + -0.0
21,316 - +0.7
21,316 - -1.3
21,410 + +0.0
21,418 - -0.5
21,434 - Atu5021 0.11 -0.4
21,458 - Atu5021 0.14 +0.0
21,497 + Atu5021 0.18 -0.2
21,505 - Atu5021 0.19 +0.8
21,507 + Atu5021 0.20 +0.1
21,520 - Atu5021 0.21 -0.6
21,520 - Atu5021 0.21 -0.3
21,557 - Atu5021 0.25 -1.2
21,619 + Atu5021 0.32 -1.2
21,652 + Atu5021 0.36 -1.3
21,652 + Atu5021 0.36 -0.1
21,652 + Atu5021 0.36 -0.9
21,652 + Atu5021 0.36 -0.1
21,660 - Atu5021 0.37 +0.0
21,660 - Atu5021 0.37 +0.1
21,684 - Atu5021 0.39 -1.3
21,707 + Atu5021 0.42 -0.4
21,725 - Atu5021 0.44 +0.8
21,766 - Atu5021 0.48 -0.5
21,843 - Atu5021 0.57 -0.3
21,879 - Atu5021 0.61 -0.2
22,128 - Atu5021 0.89 +0.4
22,130 - Atu5021 0.89 -0.6
22,167 + -0.1
22,252 + -0.3
22,252 + -0.3
22,260 - +0.5
22,260 - -0.3
22,260 - -0.0
22,260 - +0.6
22,275 + -0.4
22,281 + -1.9
22,299 + +0.2
22,299 + +0.4
22,321 + -0.2
22,332 + -0.5
22,332 + -0.5

Or see this region's nucleotide sequence