Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3631 and Atu3632 overlap by 4 nucleotides Atu3632 and Atu3633 are separated by 223 nucleotides Atu3633 and Atu3634 are separated by 187 nucleotides
Atu3631: Atu3631 - hypothetical protein, at 683,199 to 684,338
Atu3631
Atu3632: Atu3632 - hypothetical protein, at 684,335 to 684,571
Atu3632
Atu3633: Atu3633 - hypothetical protein, at 684,795 to 685,919
Atu3633
Atu3634: Atu3634 - penicillin-binding protein dacf precursor, at 686,107 to 687,276
Atu3634
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1 at 683.911 kb on + strand, within Atu3631 at 683.915 kb on - strand, within Atu3631 at 684.182 kb on - strand, within Atu3631 at 684.213 kb on + strand, within Atu3631 at 684.221 kb on - strand, within Atu3631 at 684.236 kb on + strand at 684.236 kb on + strand at 684.236 kb on + strand at 684.236 kb on + strand at 684.540 kb on - strand, within Atu3632 at 684.540 kb on - strand, within Atu3632 at 684.540 kb on - strand, within Atu3632 at 684.666 kb on + strand at 684.767 kb on + strand at 684.793 kb on + strand at 684.801 kb on - strand at 684.862 kb on - strand at 684.881 kb on - strand at 684.884 kb on - strand at 684.964 kb on - strand, within Atu3633 at 685.015 kb on + strand, within Atu3633 at 685.097 kb on - strand, within Atu3633 at 685.204 kb on - strand, within Atu3633 at 685.256 kb on - strand, within Atu3633 at 685.438 kb on + strand, within Atu3633 at 685.450 kb on - strand, within Atu3633 at 685.584 kb on + strand, within Atu3633 at 685.650 kb on - strand, within Atu3633 at 685.687 kb on + strand, within Atu3633 at 685.697 kb on + strand, within Atu3633 at 685.705 kb on - strand, within Atu3633 at 685.719 kb on - strand, within Atu3633 at 685.725 kb on + strand, within Atu3633 at 685.736 kb on + strand, within Atu3633 at 685.827 kb on + strand at 685.981 kb on - strand at 686.573 kb on + strand, within Atu3634 at 686.701 kb on + strand, within Atu3634 at 686.719 kb on - strand, within Atu3634 at 686.752 kb on - strand, within Atu3634 at 686.753 kb on - strand, within Atu3634 at 686.785 kb on - strand, within Atu3634
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 683,911 + Atu3631 0.62 +0.7 683,915 - Atu3631 0.63 +0.5 684,182 - Atu3631 0.86 +0.1 684,213 + Atu3631 0.89 +1.2 684,221 - Atu3631 0.90 +0.1 684,236 + +0.1 684,236 + -1.2 684,236 + -0.2 684,236 + +0.1 684,540 - Atu3632 0.86 -0.3 684,540 - Atu3632 0.86 -0.1 684,540 - Atu3632 0.86 +0.3 684,666 + +0.7 684,767 + +0.4 684,793 + +0.6 684,801 - -0.4 684,862 - -0.8 684,881 - -0.4 684,884 - -1.9 684,964 - Atu3633 0.15 -0.8 685,015 + Atu3633 0.20 -0.7 685,097 - Atu3633 0.27 -1.9 685,204 - Atu3633 0.36 -0.9 685,256 - Atu3633 0.41 +0.6 685,438 + Atu3633 0.57 -0.5 685,450 - Atu3633 0.58 -1.0 685,584 + Atu3633 0.70 -0.3 685,650 - Atu3633 0.76 -0.3 685,687 + Atu3633 0.79 -0.8 685,697 + Atu3633 0.80 -0.7 685,705 - Atu3633 0.81 -0.9 685,719 - Atu3633 0.82 -0.5 685,725 + Atu3633 0.83 -0.4 685,736 + Atu3633 0.84 -1.2 685,827 + -0.7 685,981 - +0.1 686,573 + Atu3634 0.40 -0.4 686,701 + Atu3634 0.51 -0.2 686,719 - Atu3634 0.52 +0.0 686,752 - Atu3634 0.55 -0.5 686,753 - Atu3634 0.55 -1.7 686,785 - Atu3634 0.58 -1.2
Or see this region's nucleotide sequence