Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3212 and Atu3213 are separated by 9 nucleotides Atu3213 and Atu3214 overlap by 4 nucleotides Atu3214 and Atu3215 overlap by 4 nucleotides
Atu3212: Atu3212 - oligopeptide ABC transporter substrate-binding protein, at 226,501 to 228,198
Atu3212
Atu3213: Atu3213 - oligopeptide ABC transporter permease, at 228,208 to 229,197
Atu3213
Atu3214: Atu3214 - oligopeptide ABC transporter permease, at 229,194 to 230,024
Atu3214
Atu3215: Atu3215 - oligopeptide ABC transporter ATPase, at 230,021 to 230,824
Atu3215
Position (kb) 228
229
230 Strain fitness (log2 ratio) -1
0
1 at 227.254 kb on + strand, within Atu3212 at 227.315 kb on + strand, within Atu3212 at 227.441 kb on + strand, within Atu3212 at 227.441 kb on + strand, within Atu3212 at 227.449 kb on - strand, within Atu3212 at 227.449 kb on - strand, within Atu3212 at 227.479 kb on + strand, within Atu3212 at 227.487 kb on - strand, within Atu3212 at 227.505 kb on + strand, within Atu3212 at 227.574 kb on + strand, within Atu3212 at 227.620 kb on + strand, within Atu3212 at 227.628 kb on - strand, within Atu3212 at 227.634 kb on - strand, within Atu3212 at 227.657 kb on - strand, within Atu3212 at 227.657 kb on - strand, within Atu3212 at 227.657 kb on - strand, within Atu3212 at 227.670 kb on + strand, within Atu3212 at 227.687 kb on + strand, within Atu3212 at 227.756 kb on + strand, within Atu3212 at 227.803 kb on - strand, within Atu3212 at 227.803 kb on - strand, within Atu3212 at 227.837 kb on - strand, within Atu3212 at 227.971 kb on - strand, within Atu3212 at 228.000 kb on - strand, within Atu3212 at 228.163 kb on + strand at 228.163 kb on + strand at 228.171 kb on - strand at 228.261 kb on - strand at 228.390 kb on + strand, within Atu3213 at 228.487 kb on + strand, within Atu3213 at 228.495 kb on + strand, within Atu3213 at 228.515 kb on - strand, within Atu3213 at 228.527 kb on - strand, within Atu3213 at 228.665 kb on + strand, within Atu3213 at 228.699 kb on - strand, within Atu3213 at 228.708 kb on + strand, within Atu3213 at 228.720 kb on - strand, within Atu3213 at 228.765 kb on + strand, within Atu3213 at 228.768 kb on - strand, within Atu3213 at 228.815 kb on + strand, within Atu3213 at 228.825 kb on + strand, within Atu3213 at 228.891 kb on + strand, within Atu3213 at 228.924 kb on + strand, within Atu3213 at 229.047 kb on + strand, within Atu3213 at 229.048 kb on + strand, within Atu3213 at 229.099 kb on - strand at 229.099 kb on - strand at 229.099 kb on - strand at 229.109 kb on - strand at 229.111 kb on + strand at 229.193 kb on - strand at 229.230 kb on - strand at 229.266 kb on - strand at 229.353 kb on + strand, within Atu3214 at 229.359 kb on - strand, within Atu3214 at 229.366 kb on + strand, within Atu3214 at 229.369 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.389 kb on - strand, within Atu3214 at 229.413 kb on + strand, within Atu3214 at 229.526 kb on - strand, within Atu3214 at 229.596 kb on - strand, within Atu3214 at 229.728 kb on - strand, within Atu3214 at 229.875 kb on - strand, within Atu3214 at 229.901 kb on + strand, within Atu3214 at 229.971 kb on - strand at 229.983 kb on + strand at 229.991 kb on - strand at 229.991 kb on - strand at 230.082 kb on + strand at 230.090 kb on - strand at 230.090 kb on - strand at 230.100 kb on - strand at 230.107 kb on - strand, within Atu3215
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 227,254 + Atu3212 0.44 +0.6 227,315 + Atu3212 0.48 +0.3 227,441 + Atu3212 0.55 +0.3 227,441 + Atu3212 0.55 +0.1 227,449 - Atu3212 0.56 -0.1 227,449 - Atu3212 0.56 +1.0 227,479 + Atu3212 0.58 -0.5 227,487 - Atu3212 0.58 -0.1 227,505 + Atu3212 0.59 -0.3 227,574 + Atu3212 0.63 -0.4 227,620 + Atu3212 0.66 -0.0 227,628 - Atu3212 0.66 +0.1 227,634 - Atu3212 0.67 -0.3 227,657 - Atu3212 0.68 -0.8 227,657 - Atu3212 0.68 +0.1 227,657 - Atu3212 0.68 +0.3 227,670 + Atu3212 0.69 +1.6 227,687 + Atu3212 0.70 -0.3 227,756 + Atu3212 0.74 -0.4 227,803 - Atu3212 0.77 +0.8 227,803 - Atu3212 0.77 -0.5 227,837 - Atu3212 0.79 +0.1 227,971 - Atu3212 0.87 -0.0 228,000 - Atu3212 0.88 -0.1 228,163 + +0.4 228,163 + +0.6 228,171 - -0.6 228,261 - +0.3 228,390 + Atu3213 0.18 -0.3 228,487 + Atu3213 0.28 -0.4 228,495 + Atu3213 0.29 -0.1 228,515 - Atu3213 0.31 -0.0 228,527 - Atu3213 0.32 +0.1 228,665 + Atu3213 0.46 -0.2 228,699 - Atu3213 0.50 +0.5 228,708 + Atu3213 0.51 -0.5 228,720 - Atu3213 0.52 -0.5 228,765 + Atu3213 0.56 -0.4 228,768 - Atu3213 0.57 -0.5 228,815 + Atu3213 0.61 -1.6 228,825 + Atu3213 0.62 -0.3 228,891 + Atu3213 0.69 -0.2 228,924 + Atu3213 0.72 +0.0 229,047 + Atu3213 0.85 -0.1 229,048 + Atu3213 0.85 +0.0 229,099 - -0.3 229,099 - -0.1 229,099 - +0.3 229,109 - -0.6 229,111 + -0.1 229,193 - +0.0 229,230 - -0.8 229,266 - -0.2 229,353 + Atu3214 0.19 -1.7 229,359 - Atu3214 0.20 -0.3 229,366 + Atu3214 0.21 +0.4 229,369 - Atu3214 0.21 -0.6 229,374 - Atu3214 0.22 +0.3 229,374 - Atu3214 0.22 -0.1 229,389 - Atu3214 0.23 -0.4 229,413 + Atu3214 0.26 -0.5 229,526 - Atu3214 0.40 -0.4 229,596 - Atu3214 0.48 +0.1 229,728 - Atu3214 0.64 -0.4 229,875 - Atu3214 0.82 -0.1 229,901 + Atu3214 0.85 -0.7 229,971 - -0.6 229,983 + -1.3 229,991 - -0.2 229,991 - -0.0 230,082 + +0.2 230,090 - +0.4 230,090 - +0.4 230,100 - -0.4 230,107 - Atu3215 0.11 -0.6
Or see this region's nucleotide sequence