Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0702 and Atu0703 are separated by 4 nucleotides Atu0703 and Atu0704 are separated by 15 nucleotides Atu0704 and Atu0705 overlap by 1 nucleotides
Atu0702: Atu0702 - calcium-binding protein, regucalcin, at 702,702 to 703,589
Atu0702
Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223
Atu0703
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926
Atu0705
Position (kb) 703
704
705 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 702.596 kb on - strand at 702.625 kb on - strand at 702.709 kb on - strand at 702.724 kb on + strand at 702.764 kb on - strand at 702.947 kb on + strand, within Atu0702 at 702.992 kb on - strand, within Atu0702 at 703.028 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.107 kb on - strand, within Atu0702 at 703.170 kb on - strand, within Atu0702 at 703.231 kb on + strand, within Atu0702 at 703.376 kb on + strand, within Atu0702 at 703.483 kb on - strand, within Atu0702 at 703.590 kb on + strand at 703.658 kb on - strand, within Atu0703 at 703.678 kb on - strand, within Atu0703 at 703.858 kb on - strand, within Atu0703 at 704.131 kb on - strand, within Atu0703 at 704.336 kb on + strand, within Atu0704 at 704.336 kb on + strand, within Atu0704 at 704.358 kb on + strand, within Atu0704 at 704.474 kb on - strand, within Atu0704 at 704.484 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.571 kb on - strand, within Atu0704 at 704.603 kb on - strand, within Atu0704 at 704.622 kb on + strand, within Atu0704 at 704.651 kb on + strand, within Atu0704 at 704.693 kb on - strand, within Atu0704 at 704.747 kb on + strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.804 kb on + strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.916 kb on - strand, within Atu0704 at 704.917 kb on - strand, within Atu0704 at 704.951 kb on + strand, within Atu0704 at 704.998 kb on - strand, within Atu0704 at 705.125 kb on - strand at 705.131 kb on - strand at 705.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 702,596 - +0.0 702,625 - -0.4 702,709 - -0.4 702,724 + -0.1 702,764 - +0.5 702,947 + Atu0702 0.28 -0.5 702,992 - Atu0702 0.33 -5.8 703,028 - Atu0702 0.37 -0.6 703,083 - Atu0702 0.43 +1.6 703,083 - Atu0702 0.43 -0.1 703,107 - Atu0702 0.46 -1.2 703,170 - Atu0702 0.53 -0.3 703,231 + Atu0702 0.60 +0.1 703,376 + Atu0702 0.76 +0.1 703,483 - Atu0702 0.88 -0.6 703,590 + +0.6 703,658 - Atu0703 0.10 -3.6 703,678 - Atu0703 0.13 -3.8 703,858 - Atu0703 0.42 -4.1 704,131 - Atu0703 0.85 -1.6 704,336 + Atu0704 0.11 -2.3 704,336 + Atu0704 0.11 -0.8 704,358 + Atu0704 0.13 -2.0 704,474 - Atu0704 0.26 -1.6 704,484 - Atu0704 0.27 -2.2 704,541 - Atu0704 0.33 -1.4 704,541 - Atu0704 0.33 -2.5 704,571 - Atu0704 0.36 -0.6 704,603 - Atu0704 0.40 -2.2 704,622 + Atu0704 0.42 -2.6 704,651 + Atu0704 0.45 -2.5 704,693 - Atu0704 0.50 -1.7 704,747 + Atu0704 0.56 -2.8 704,755 - Atu0704 0.56 -1.2 704,755 - Atu0704 0.56 +0.4 704,804 + Atu0704 0.62 -1.9 704,812 - Atu0704 0.63 -2.1 704,812 - Atu0704 0.63 -1.9 704,812 - Atu0704 0.63 -0.2 704,812 - Atu0704 0.63 -2.1 704,916 - Atu0704 0.74 -1.4 704,917 - Atu0704 0.74 -1.8 704,951 + Atu0704 0.78 +0.2 704,998 - Atu0704 0.83 -0.6 705,125 - -1.4 705,131 - -2.0 705,151 + -2.6
Or see this region's nucleotide sequence