Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4656 and Echvi_4657 are separated by 16 nucleotides Echvi_4657 and Echvi_4658 are separated by 44 nucleotides Echvi_4658 and Echvi_4659 are separated by 42 nucleotides Echvi_4659 and Echvi_4660 overlap by 60 nucleotides
Echvi_4656: Echvi_4656 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 5,574,229 to 5,575,611
_4656
Echvi_4657: Echvi_4657 - Signal transduction histidine kinase, at 5,575,628 to 5,578,177
_4657
Echvi_4658: Echvi_4658 - hypothetical protein, at 5,578,222 to 5,578,863
_4658
Echvi_4659: Echvi_4659 - hypothetical protein, at 5,578,906 to 5,579,052
_4659
Echvi_4660: Echvi_4660 - cystathionine beta-synthase, at 5,578,993 to 5,580,363
_4660
Position (kb) 5575
5576
5577
5578
5579 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.679 kb on + strand, within Echvi_4656 at 5574.680 kb on - strand, within Echvi_4656 at 5574.721 kb on + strand, within Echvi_4656 at 5574.724 kb on - strand, within Echvi_4656 at 5574.758 kb on + strand, within Echvi_4656 at 5574.793 kb on - strand, within Echvi_4656 at 5574.933 kb on + strand, within Echvi_4656 at 5574.934 kb on - strand, within Echvi_4656 at 5574.934 kb on - strand, within Echvi_4656 at 5575.000 kb on + strand, within Echvi_4656 at 5575.079 kb on + strand, within Echvi_4656 at 5575.156 kb on + strand, within Echvi_4656 at 5575.161 kb on + strand, within Echvi_4656 at 5575.162 kb on - strand, within Echvi_4656 at 5575.217 kb on + strand, within Echvi_4656 at 5575.218 kb on - strand, within Echvi_4656 at 5575.218 kb on - strand, within Echvi_4656 at 5575.296 kb on - strand, within Echvi_4656 at 5575.316 kb on - strand, within Echvi_4656 at 5575.387 kb on + strand, within Echvi_4656 at 5575.388 kb on - strand, within Echvi_4656 at 5575.413 kb on - strand, within Echvi_4656 at 5575.581 kb on + strand at 5575.582 kb on - strand at 5575.584 kb on + strand at 5575.626 kb on + strand at 5575.662 kb on - strand at 5575.662 kb on - strand at 5575.753 kb on - strand at 5575.774 kb on + strand at 5575.790 kb on + strand at 5575.791 kb on - strand at 5575.833 kb on - strand at 5575.913 kb on + strand, within Echvi_4657 at 5575.913 kb on + strand, within Echvi_4657 at 5575.914 kb on - strand, within Echvi_4657 at 5575.972 kb on - strand, within Echvi_4657 at 5575.972 kb on - strand, within Echvi_4657 at 5576.092 kb on + strand, within Echvi_4657 at 5576.152 kb on + strand, within Echvi_4657 at 5576.190 kb on + strand, within Echvi_4657 at 5576.215 kb on + strand, within Echvi_4657 at 5576.215 kb on + strand, within Echvi_4657 at 5576.310 kb on + strand, within Echvi_4657 at 5576.311 kb on - strand, within Echvi_4657 at 5576.311 kb on - strand, within Echvi_4657 at 5576.390 kb on + strand, within Echvi_4657 at 5576.390 kb on + strand, within Echvi_4657 at 5576.390 kb on + strand, within Echvi_4657 at 5576.390 kb on + strand, within Echvi_4657 at 5576.390 kb on + strand, within Echvi_4657 at 5576.391 kb on - strand, within Echvi_4657 at 5576.391 kb on - strand, within Echvi_4657 at 5576.392 kb on + strand, within Echvi_4657 at 5576.412 kb on + strand, within Echvi_4657 at 5576.500 kb on + strand, within Echvi_4657 at 5576.569 kb on + strand, within Echvi_4657 at 5576.581 kb on + strand, within Echvi_4657 at 5576.581 kb on + strand, within Echvi_4657 at 5576.608 kb on + strand, within Echvi_4657 at 5576.667 kb on - strand, within Echvi_4657 at 5576.694 kb on + strand, within Echvi_4657 at 5576.750 kb on - strand, within Echvi_4657 at 5576.750 kb on - strand, within Echvi_4657 at 5576.777 kb on - strand, within Echvi_4657 at 5576.777 kb on - strand, within Echvi_4657 at 5576.811 kb on - strand, within Echvi_4657 at 5576.834 kb on + strand, within Echvi_4657 at 5576.834 kb on + strand, within Echvi_4657 at 5576.845 kb on - strand, within Echvi_4657 at 5576.915 kb on + strand, within Echvi_4657 at 5576.954 kb on + strand, within Echvi_4657 at 5576.955 kb on - strand, within Echvi_4657 at 5576.956 kb on + strand, within Echvi_4657 at 5576.956 kb on + strand, within Echvi_4657 at 5576.956 kb on + strand, within Echvi_4657 at 5576.957 kb on - strand, within Echvi_4657 at 5576.957 kb on - strand, within Echvi_4657 at 5577.001 kb on + strand, within Echvi_4657 at 5577.001 kb on + strand, within Echvi_4657 at 5577.002 kb on - strand, within Echvi_4657 at 5577.002 kb on - strand, within Echvi_4657 at 5577.002 kb on - strand, within Echvi_4657 at 5577.010 kb on - strand, within Echvi_4657 at 5577.055 kb on + strand, within Echvi_4657 at 5577.055 kb on + strand, within Echvi_4657 at 5577.056 kb on - strand, within Echvi_4657 at 5577.056 kb on - strand, within Echvi_4657 at 5577.056 kb on - strand, within Echvi_4657 at 5577.056 kb on - strand, within Echvi_4657 at 5577.057 kb on + strand, within Echvi_4657 at 5577.058 kb on - strand, within Echvi_4657 at 5577.100 kb on + strand, within Echvi_4657 at 5577.100 kb on + strand, within Echvi_4657 at 5577.101 kb on - strand, within Echvi_4657 at 5577.101 kb on - strand, within Echvi_4657 at 5577.101 kb on - strand, within Echvi_4657 at 5577.101 kb on - strand, within Echvi_4657 at 5577.187 kb on + strand, within Echvi_4657 at 5577.187 kb on + strand, within Echvi_4657 at 5577.187 kb on + strand, within Echvi_4657 at 5577.205 kb on + strand, within Echvi_4657 at 5577.205 kb on + strand, within Echvi_4657 at 5577.208 kb on + strand, within Echvi_4657 at 5577.209 kb on - strand, within Echvi_4657 at 5577.210 kb on + strand, within Echvi_4657 at 5577.210 kb on + strand, within Echvi_4657 at 5577.210 kb on + strand, within Echvi_4657 at 5577.210 kb on + strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.211 kb on - strand, within Echvi_4657 at 5577.236 kb on - strand, within Echvi_4657 at 5577.239 kb on + strand, within Echvi_4657 at 5577.240 kb on - strand, within Echvi_4657 at 5577.240 kb on - strand, within Echvi_4657 at 5577.248 kb on - strand, within Echvi_4657 at 5577.330 kb on + strand, within Echvi_4657 at 5577.367 kb on + strand, within Echvi_4657 at 5577.473 kb on + strand, within Echvi_4657 at 5577.474 kb on - strand, within Echvi_4657 at 5577.489 kb on + strand, within Echvi_4657 at 5577.509 kb on + strand, within Echvi_4657 at 5577.569 kb on + strand, within Echvi_4657 at 5577.569 kb on + strand, within Echvi_4657 at 5577.666 kb on - strand, within Echvi_4657 at 5577.784 kb on + strand, within Echvi_4657 at 5577.784 kb on + strand, within Echvi_4657 at 5577.837 kb on + strand, within Echvi_4657 at 5577.841 kb on + strand, within Echvi_4657 at 5577.841 kb on + strand, within Echvi_4657 at 5577.842 kb on - strand, within Echvi_4657 at 5577.842 kb on - strand, within Echvi_4657 at 5577.871 kb on + strand, within Echvi_4657 at 5577.924 kb on + strand at 5577.925 kb on - strand at 5577.971 kb on + strand at 5578.069 kb on + strand at 5578.081 kb on - strand at 5578.081 kb on - strand at 5578.095 kb on - strand at 5578.111 kb on + strand at 5578.123 kb on + strand at 5578.123 kb on + strand at 5578.124 kb on - strand at 5578.124 kb on - strand at 5578.130 kb on + strand at 5578.223 kb on + strand at 5578.249 kb on + strand at 5578.250 kb on - strand at 5578.281 kb on - strand at 5578.281 kb on - strand at 5578.315 kb on + strand, within Echvi_4658 at 5578.316 kb on - strand, within Echvi_4658 at 5578.344 kb on + strand, within Echvi_4658 at 5578.415 kb on + strand, within Echvi_4658 at 5578.513 kb on + strand, within Echvi_4658 at 5578.569 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.571 kb on + strand, within Echvi_4658 at 5578.572 kb on - strand, within Echvi_4658 at 5578.572 kb on - strand, within Echvi_4658 at 5578.572 kb on - strand, within Echvi_4658 at 5578.572 kb on - strand, within Echvi_4658 at 5578.572 kb on - strand, within Echvi_4658 at 5578.572 kb on - strand, within Echvi_4658 at 5578.574 kb on + strand, within Echvi_4658 at 5578.574 kb on + strand, within Echvi_4658 at 5578.575 kb on - strand, within Echvi_4658 at 5578.575 kb on - strand, within Echvi_4658 at 5578.578 kb on + strand, within Echvi_4658 at 5578.579 kb on - strand, within Echvi_4658 at 5578.599 kb on + strand, within Echvi_4658 at 5578.702 kb on - strand, within Echvi_4658 at 5578.747 kb on - strand, within Echvi_4658 at 5578.748 kb on + strand, within Echvi_4658 at 5578.795 kb on + strand, within Echvi_4658 at 5578.823 kb on + strand at 5578.824 kb on - strand at 5578.852 kb on + strand at 5578.852 kb on + strand at 5578.864 kb on - strand at 5578.878 kb on - strand at 5578.905 kb on - strand at 5578.919 kb on - strand at 5578.925 kb on - strand, within Echvi_4659 at 5578.925 kb on - strand, within Echvi_4659 at 5578.938 kb on + strand, within Echvi_4659 at 5578.939 kb on - strand, within Echvi_4659 at 5578.960 kb on - strand, within Echvi_4659 at 5578.965 kb on + strand, within Echvi_4659 at 5578.965 kb on + strand, within Echvi_4659 at 5578.995 kb on - strand at 5578.995 kb on - strand at 5579.050 kb on + strand at 5579.050 kb on + strand at 5579.050 kb on + strand at 5579.050 kb on + strand at 5579.050 kb on + strand at 5579.051 kb on - strand at 5579.051 kb on - strand at 5579.051 kb on - strand at 5579.051 kb on - strand at 5579.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 5,574,679 + Echvi_4656 0.33 -2.4 5,574,679 + Echvi_4656 0.33 -0.7 5,574,679 + Echvi_4656 0.33 +0.7 5,574,679 + Echvi_4656 0.33 -0.0 5,574,679 + Echvi_4656 0.33 -0.8 5,574,679 + Echvi_4656 0.33 +0.4 5,574,679 + Echvi_4656 0.33 -0.6 5,574,679 + Echvi_4656 0.33 +0.2 5,574,680 - Echvi_4656 0.33 -0.8 5,574,721 + Echvi_4656 0.36 -0.0 5,574,724 - Echvi_4656 0.36 +0.2 5,574,758 + Echvi_4656 0.38 +0.0 5,574,793 - Echvi_4656 0.41 -0.4 5,574,933 + Echvi_4656 0.51 -0.8 5,574,934 - Echvi_4656 0.51 -0.9 5,574,934 - Echvi_4656 0.51 +0.0 5,575,000 + Echvi_4656 0.56 +1.3 5,575,079 + Echvi_4656 0.61 +0.8 5,575,156 + Echvi_4656 0.67 +0.4 5,575,161 + Echvi_4656 0.67 +1.0 5,575,162 - Echvi_4656 0.67 +0.0 5,575,217 + Echvi_4656 0.71 +0.6 5,575,218 - Echvi_4656 0.72 +0.5 5,575,218 - Echvi_4656 0.72 +0.7 5,575,296 - Echvi_4656 0.77 +0.7 5,575,316 - Echvi_4656 0.79 -0.4 5,575,387 + Echvi_4656 0.84 +0.1 5,575,388 - Echvi_4656 0.84 +0.6 5,575,413 - Echvi_4656 0.86 -1.0 5,575,581 + +0.0 5,575,582 - -0.6 5,575,584 + -0.5 5,575,626 + -0.8 5,575,662 - +0.8 5,575,662 - -0.4 5,575,753 - +0.3 5,575,774 + +0.9 5,575,790 + +0.3 5,575,791 - -0.5 5,575,833 - -0.2 5,575,913 + Echvi_4657 0.11 +1.5 5,575,913 + Echvi_4657 0.11 +0.9 5,575,914 - Echvi_4657 0.11 +1.7 5,575,972 - Echvi_4657 0.13 +0.0 5,575,972 - Echvi_4657 0.13 +1.5 5,576,092 + Echvi_4657 0.18 -0.5 5,576,152 + Echvi_4657 0.21 +1.2 5,576,190 + Echvi_4657 0.22 -1.7 5,576,215 + Echvi_4657 0.23 +0.9 5,576,215 + Echvi_4657 0.23 +0.7 5,576,310 + Echvi_4657 0.27 -1.0 5,576,311 - Echvi_4657 0.27 +0.4 5,576,311 - Echvi_4657 0.27 +2.0 5,576,390 + Echvi_4657 0.30 +2.5 5,576,390 + Echvi_4657 0.30 -0.6 5,576,390 + Echvi_4657 0.30 -0.4 5,576,390 + Echvi_4657 0.30 +0.2 5,576,390 + Echvi_4657 0.30 +2.0 5,576,391 - Echvi_4657 0.30 +1.6 5,576,391 - Echvi_4657 0.30 -0.2 5,576,392 + Echvi_4657 0.30 -0.7 5,576,412 + Echvi_4657 0.31 +0.4 5,576,500 + Echvi_4657 0.34 +0.7 5,576,569 + Echvi_4657 0.37 +0.2 5,576,581 + Echvi_4657 0.37 +1.5 5,576,581 + Echvi_4657 0.37 +0.2 5,576,608 + Echvi_4657 0.38 +1.5 5,576,667 - Echvi_4657 0.41 +2.0 5,576,694 + Echvi_4657 0.42 +0.2 5,576,750 - Echvi_4657 0.44 -0.5 5,576,750 - Echvi_4657 0.44 -0.4 5,576,777 - Echvi_4657 0.45 +0.4 5,576,777 - Echvi_4657 0.45 -0.7 5,576,811 - Echvi_4657 0.46 -0.5 5,576,834 + Echvi_4657 0.47 +0.5 5,576,834 + Echvi_4657 0.47 -0.4 5,576,845 - Echvi_4657 0.48 +0.1 5,576,915 + Echvi_4657 0.50 -0.0 5,576,954 + Echvi_4657 0.52 -1.8 5,576,955 - Echvi_4657 0.52 +1.4 5,576,956 + Echvi_4657 0.52 -0.2 5,576,956 + Echvi_4657 0.52 +0.9 5,576,956 + Echvi_4657 0.52 +1.0 5,576,957 - Echvi_4657 0.52 +0.6 5,576,957 - Echvi_4657 0.52 -0.8 5,577,001 + Echvi_4657 0.54 +3.4 5,577,001 + Echvi_4657 0.54 -1.0 5,577,002 - Echvi_4657 0.54 +1.4 5,577,002 - Echvi_4657 0.54 -0.1 5,577,002 - Echvi_4657 0.54 -0.4 5,577,010 - Echvi_4657 0.54 +0.1 5,577,055 + Echvi_4657 0.56 +0.1 5,577,055 + Echvi_4657 0.56 +0.3 5,577,056 - Echvi_4657 0.56 +0.4 5,577,056 - Echvi_4657 0.56 +1.6 5,577,056 - Echvi_4657 0.56 +1.0 5,577,056 - Echvi_4657 0.56 +0.2 5,577,057 + Echvi_4657 0.56 -1.6 5,577,058 - Echvi_4657 0.56 -0.1 5,577,100 + Echvi_4657 0.58 +3.2 5,577,100 + Echvi_4657 0.58 +0.5 5,577,101 - Echvi_4657 0.58 -0.9 5,577,101 - Echvi_4657 0.58 -0.1 5,577,101 - Echvi_4657 0.58 +0.4 5,577,101 - Echvi_4657 0.58 +0.4 5,577,187 + Echvi_4657 0.61 +0.9 5,577,187 + Echvi_4657 0.61 +0.6 5,577,187 + Echvi_4657 0.61 -0.5 5,577,205 + Echvi_4657 0.62 +0.7 5,577,205 + Echvi_4657 0.62 -1.4 5,577,208 + Echvi_4657 0.62 +1.0 5,577,209 - Echvi_4657 0.62 -0.4 5,577,210 + Echvi_4657 0.62 -1.4 5,577,210 + Echvi_4657 0.62 +1.2 5,577,210 + Echvi_4657 0.62 -0.8 5,577,210 + Echvi_4657 0.62 -1.5 5,577,211 - Echvi_4657 0.62 +0.6 5,577,211 - Echvi_4657 0.62 -0.6 5,577,211 - Echvi_4657 0.62 -1.2 5,577,211 - Echvi_4657 0.62 -1.0 5,577,211 - Echvi_4657 0.62 -0.1 5,577,211 - Echvi_4657 0.62 -0.2 5,577,211 - Echvi_4657 0.62 +0.0 5,577,236 - Echvi_4657 0.63 -0.3 5,577,239 + Echvi_4657 0.63 +0.2 5,577,240 - Echvi_4657 0.63 +0.3 5,577,240 - Echvi_4657 0.63 +1.1 5,577,248 - Echvi_4657 0.64 +0.8 5,577,330 + Echvi_4657 0.67 +0.4 5,577,367 + Echvi_4657 0.68 -0.5 5,577,473 + Echvi_4657 0.72 -0.8 5,577,474 - Echvi_4657 0.72 -0.0 5,577,489 + Echvi_4657 0.73 -0.5 5,577,509 + Echvi_4657 0.74 +1.2 5,577,569 + Echvi_4657 0.76 -0.4 5,577,569 + Echvi_4657 0.76 +1.5 5,577,666 - Echvi_4657 0.80 -0.1 5,577,784 + Echvi_4657 0.85 +1.0 5,577,784 + Echvi_4657 0.85 -0.4 5,577,837 + Echvi_4657 0.87 +0.2 5,577,841 + Echvi_4657 0.87 +1.1 5,577,841 + Echvi_4657 0.87 +0.5 5,577,842 - Echvi_4657 0.87 +0.2 5,577,842 - Echvi_4657 0.87 +1.0 5,577,871 + Echvi_4657 0.88 -0.4 5,577,924 + -0.4 5,577,925 - +0.3 5,577,971 + -0.3 5,578,069 + +0.4 5,578,081 - +1.6 5,578,081 - +0.7 5,578,095 - +1.1 5,578,111 + -0.0 5,578,123 + +1.3 5,578,123 + +0.4 5,578,124 - +0.2 5,578,124 - +0.8 5,578,130 + +0.5 5,578,223 + -1.0 5,578,249 + -0.5 5,578,250 - -1.0 5,578,281 - -0.2 5,578,281 - +1.2 5,578,315 + Echvi_4658 0.14 -0.6 5,578,316 - Echvi_4658 0.15 -0.2 5,578,344 + Echvi_4658 0.19 -1.4 5,578,415 + Echvi_4658 0.30 -0.1 5,578,513 + Echvi_4658 0.45 -2.3 5,578,569 + Echvi_4658 0.54 +0.6 5,578,571 + Echvi_4658 0.54 +1.2 5,578,571 + Echvi_4658 0.54 -0.5 5,578,571 + Echvi_4658 0.54 +0.3 5,578,571 + Echvi_4658 0.54 -0.3 5,578,571 + Echvi_4658 0.54 -1.2 5,578,571 + Echvi_4658 0.54 +1.3 5,578,571 + Echvi_4658 0.54 -0.0 5,578,571 + Echvi_4658 0.54 -0.3 5,578,571 + Echvi_4658 0.54 -0.1 5,578,572 - Echvi_4658 0.55 -0.8 5,578,572 - Echvi_4658 0.55 -0.6 5,578,572 - Echvi_4658 0.55 -0.7 5,578,572 - Echvi_4658 0.55 +0.4 5,578,572 - Echvi_4658 0.55 +1.0 5,578,572 - Echvi_4658 0.55 +0.5 5,578,574 + Echvi_4658 0.55 +0.1 5,578,574 + Echvi_4658 0.55 +1.2 5,578,575 - Echvi_4658 0.55 +1.7 5,578,575 - Echvi_4658 0.55 -0.6 5,578,578 + Echvi_4658 0.55 +0.8 5,578,579 - Echvi_4658 0.56 -0.8 5,578,599 + Echvi_4658 0.59 -0.5 5,578,702 - Echvi_4658 0.75 -0.4 5,578,747 - Echvi_4658 0.82 -2.1 5,578,748 + Echvi_4658 0.82 +1.0 5,578,795 + Echvi_4658 0.89 +0.6 5,578,823 + -0.2 5,578,824 - -1.3 5,578,852 + -1.7 5,578,852 + -0.1 5,578,864 - +1.0 5,578,878 - -0.4 5,578,905 - +1.0 5,578,919 - +1.6 5,578,925 - Echvi_4659 0.13 +1.2 5,578,925 - Echvi_4659 0.13 +0.9 5,578,938 + Echvi_4659 0.22 -0.5 5,578,939 - Echvi_4659 0.22 +0.4 5,578,960 - Echvi_4659 0.37 +0.6 5,578,965 + Echvi_4659 0.40 -0.1 5,578,965 + Echvi_4659 0.40 -1.0 5,578,995 - -1.6 5,578,995 - +0.7 5,579,050 + -0.6 5,579,050 + +0.8 5,579,050 + +0.1 5,579,050 + +0.5 5,579,050 + +0.3 5,579,051 - +0.8 5,579,051 - +0.2 5,579,051 - +0.7 5,579,051 - +0.2 5,579,112 + -0.0
Or see this region's nucleotide sequence