Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4573 and Echvi_4574 are separated by 232 nucleotides Echvi_4574 and Echvi_4575 are separated by 32 nucleotides
Echvi_4573: Echvi_4573 - Glycosyltransferases, probably involved in cell wall biogenesis, at 5,479,295 to 5,480,080
_4573
Echvi_4574: Echvi_4574 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 5,480,313 to 5,481,665
_4574
Echvi_4575: Echvi_4575 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 5,481,698 to 5,483,017
_4575
Position (kb) 5480
5481
5482 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5479.322 kb on - strand at 5479.331 kb on - strand at 5479.336 kb on - strand at 5479.340 kb on - strand at 5479.340 kb on - strand at 5479.342 kb on - strand at 5479.342 kb on - strand at 5479.344 kb on + strand at 5479.345 kb on - strand at 5479.405 kb on + strand, within Echvi_4573 at 5479.417 kb on + strand, within Echvi_4573 at 5479.418 kb on - strand, within Echvi_4573 at 5479.418 kb on - strand, within Echvi_4573 at 5479.478 kb on + strand, within Echvi_4573 at 5479.504 kb on - strand, within Echvi_4573 at 5479.536 kb on - strand, within Echvi_4573 at 5479.536 kb on - strand, within Echvi_4573 at 5479.547 kb on + strand, within Echvi_4573 at 5479.547 kb on + strand, within Echvi_4573 at 5479.549 kb on + strand, within Echvi_4573 at 5479.550 kb on - strand, within Echvi_4573 at 5479.550 kb on - strand, within Echvi_4573 at 5479.550 kb on - strand, within Echvi_4573 at 5479.550 kb on - strand, within Echvi_4573 at 5479.562 kb on + strand, within Echvi_4573 at 5479.576 kb on + strand, within Echvi_4573 at 5479.576 kb on + strand, within Echvi_4573 at 5479.577 kb on - strand, within Echvi_4573 at 5479.580 kb on + strand, within Echvi_4573 at 5479.580 kb on + strand, within Echvi_4573 at 5479.581 kb on - strand, within Echvi_4573 at 5479.581 kb on - strand, within Echvi_4573 at 5479.581 kb on - strand, within Echvi_4573 at 5479.614 kb on - strand, within Echvi_4573 at 5479.614 kb on - strand, within Echvi_4573 at 5479.615 kb on + strand, within Echvi_4573 at 5479.616 kb on - strand, within Echvi_4573 at 5479.616 kb on - strand, within Echvi_4573 at 5479.633 kb on + strand, within Echvi_4573 at 5479.635 kb on + strand, within Echvi_4573 at 5479.636 kb on - strand, within Echvi_4573 at 5479.636 kb on - strand, within Echvi_4573 at 5479.639 kb on + strand, within Echvi_4573 at 5479.639 kb on + strand, within Echvi_4573 at 5479.640 kb on - strand, within Echvi_4573 at 5479.727 kb on - strand, within Echvi_4573 at 5479.739 kb on + strand, within Echvi_4573 at 5479.809 kb on + strand, within Echvi_4573 at 5479.809 kb on + strand, within Echvi_4573 at 5479.810 kb on - strand, within Echvi_4573 at 5479.810 kb on - strand, within Echvi_4573 at 5479.810 kb on - strand, within Echvi_4573 at 5479.810 kb on - strand, within Echvi_4573 at 5479.811 kb on + strand, within Echvi_4573 at 5479.811 kb on + strand, within Echvi_4573 at 5479.811 kb on + strand, within Echvi_4573 at 5479.811 kb on + strand, within Echvi_4573 at 5479.811 kb on + strand, within Echvi_4573 at 5479.811 kb on + strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.812 kb on - strand, within Echvi_4573 at 5479.817 kb on + strand, within Echvi_4573 at 5479.818 kb on - strand, within Echvi_4573 at 5479.818 kb on - strand, within Echvi_4573 at 5479.818 kb on - strand, within Echvi_4573 at 5479.818 kb on - strand, within Echvi_4573 at 5479.818 kb on - strand, within Echvi_4573 at 5479.818 kb on - strand, within Echvi_4573 at 5479.864 kb on + strand, within Echvi_4573 at 5479.875 kb on - strand, within Echvi_4573 at 5479.895 kb on + strand, within Echvi_4573 at 5479.896 kb on - strand, within Echvi_4573 at 5479.896 kb on - strand, within Echvi_4573 at 5479.896 kb on - strand, within Echvi_4573 at 5479.914 kb on - strand, within Echvi_4573 at 5479.928 kb on - strand, within Echvi_4573 at 5480.023 kb on + strand at 5480.025 kb on + strand at 5480.025 kb on + strand at 5480.025 kb on + strand at 5480.026 kb on - strand at 5480.069 kb on + strand at 5480.069 kb on + strand at 5480.070 kb on - strand at 5480.084 kb on - strand at 5480.094 kb on + strand at 5480.099 kb on - strand at 5480.254 kb on - strand at 5480.272 kb on - strand at 5480.274 kb on + strand at 5480.275 kb on - strand at 5480.275 kb on - strand at 5480.275 kb on - strand at 5480.365 kb on - strand at 5480.407 kb on - strand at 5480.413 kb on + strand at 5480.414 kb on - strand at 5480.414 kb on - strand at 5480.419 kb on + strand at 5480.441 kb on - strand at 5480.517 kb on + strand, within Echvi_4574 at 5480.522 kb on + strand, within Echvi_4574 at 5480.535 kb on - strand, within Echvi_4574 at 5480.582 kb on - strand, within Echvi_4574 at 5480.622 kb on + strand, within Echvi_4574 at 5480.629 kb on + strand, within Echvi_4574 at 5480.696 kb on - strand, within Echvi_4574 at 5480.707 kb on + strand, within Echvi_4574 at 5480.718 kb on - strand, within Echvi_4574 at 5480.887 kb on - strand, within Echvi_4574 at 5480.887 kb on - strand, within Echvi_4574 at 5480.888 kb on + strand, within Echvi_4574 at 5480.888 kb on + strand, within Echvi_4574 at 5480.923 kb on + strand, within Echvi_4574 at 5480.951 kb on + strand, within Echvi_4574 at 5480.952 kb on - strand, within Echvi_4574 at 5480.954 kb on - strand, within Echvi_4574 at 5481.330 kb on - strand, within Echvi_4574 at 5481.330 kb on - strand, within Echvi_4574 at 5481.418 kb on + strand, within Echvi_4574 at 5481.518 kb on - strand, within Echvi_4574 at 5481.560 kb on + strand at 5481.560 kb on + strand at 5481.560 kb on + strand at 5481.564 kb on + strand at 5481.565 kb on - strand at 5481.565 kb on - strand at 5481.630 kb on - strand at 5481.630 kb on - strand at 5481.630 kb on - strand at 5481.636 kb on + strand at 5481.637 kb on - strand at 5481.637 kb on - strand at 5481.661 kb on + strand at 5481.664 kb on - strand at 5481.668 kb on - strand at 5481.674 kb on + strand at 5481.674 kb on + strand at 5481.677 kb on + strand at 5481.677 kb on + strand at 5481.715 kb on + strand at 5481.715 kb on + strand at 5481.716 kb on - strand at 5481.720 kb on + strand at 5481.720 kb on + strand at 5481.720 kb on + strand at 5481.720 kb on + strand at 5481.721 kb on - strand at 5481.721 kb on - strand at 5481.813 kb on + strand at 5481.813 kb on + strand at 5481.814 kb on - strand at 5481.860 kb on - strand, within Echvi_4575 at 5481.874 kb on + strand, within Echvi_4575 at 5481.927 kb on - strand, within Echvi_4575 at 5481.927 kb on - strand, within Echvi_4575 at 5481.934 kb on - strand, within Echvi_4575 at 5481.945 kb on + strand, within Echvi_4575 at 5482.192 kb on + strand, within Echvi_4575 at 5482.192 kb on + strand, within Echvi_4575 at 5482.193 kb on - strand, within Echvi_4575 at 5482.193 kb on - strand, within Echvi_4575 at 5482.204 kb on + strand, within Echvi_4575 at 5482.329 kb on + strand, within Echvi_4575 at 5482.377 kb on + strand, within Echvi_4575 at 5482.431 kb on + strand, within Echvi_4575 at 5482.432 kb on - strand, within Echvi_4575 at 5482.505 kb on + strand, within Echvi_4575 at 5482.541 kb on + strand, within Echvi_4575 at 5482.623 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 5,479,322 - -2.9 5,479,331 - -0.6 5,479,336 - -0.6 5,479,340 - -2.4 5,479,340 - -1.6 5,479,342 - -2.0 5,479,342 - -0.4 5,479,344 + +1.4 5,479,345 - -3.5 5,479,405 + Echvi_4573 0.14 -0.6 5,479,417 + Echvi_4573 0.16 -0.6 5,479,418 - Echvi_4573 0.16 -1.3 5,479,418 - Echvi_4573 0.16 -3.1 5,479,478 + Echvi_4573 0.23 +0.7 5,479,504 - Echvi_4573 0.27 -4.0 5,479,536 - Echvi_4573 0.31 -4.8 5,479,536 - Echvi_4573 0.31 -4.3 5,479,547 + Echvi_4573 0.32 +0.8 5,479,547 + Echvi_4573 0.32 -1.6 5,479,549 + Echvi_4573 0.32 +1.0 5,479,550 - Echvi_4573 0.32 -0.8 5,479,550 - Echvi_4573 0.32 -1.8 5,479,550 - Echvi_4573 0.32 -2.4 5,479,550 - Echvi_4573 0.32 -0.7 5,479,562 + Echvi_4573 0.34 +0.8 5,479,576 + Echvi_4573 0.36 -0.3 5,479,576 + Echvi_4573 0.36 +0.4 5,479,577 - Echvi_4573 0.36 -0.5 5,479,580 + Echvi_4573 0.36 -2.1 5,479,580 + Echvi_4573 0.36 +0.4 5,479,581 - Echvi_4573 0.36 -2.7 5,479,581 - Echvi_4573 0.36 -2.9 5,479,581 - Echvi_4573 0.36 -1.7 5,479,614 - Echvi_4573 0.41 -2.8 5,479,614 - Echvi_4573 0.41 -2.2 5,479,615 + Echvi_4573 0.41 +0.2 5,479,616 - Echvi_4573 0.41 -1.7 5,479,616 - Echvi_4573 0.41 -4.5 5,479,633 + Echvi_4573 0.43 +1.0 5,479,635 + Echvi_4573 0.43 -0.8 5,479,636 - Echvi_4573 0.43 -3.1 5,479,636 - Echvi_4573 0.43 -2.6 5,479,639 + Echvi_4573 0.44 -1.0 5,479,639 + Echvi_4573 0.44 -0.4 5,479,640 - Echvi_4573 0.44 -1.6 5,479,727 - Echvi_4573 0.55 -0.8 5,479,739 + Echvi_4573 0.56 -1.4 5,479,809 + Echvi_4573 0.65 +0.7 5,479,809 + Echvi_4573 0.65 +0.7 5,479,810 - Echvi_4573 0.66 -2.3 5,479,810 - Echvi_4573 0.66 -3.7 5,479,810 - Echvi_4573 0.66 +0.4 5,479,810 - Echvi_4573 0.66 -3.5 5,479,811 + Echvi_4573 0.66 -0.7 5,479,811 + Echvi_4573 0.66 +1.0 5,479,811 + Echvi_4573 0.66 +0.6 5,479,811 + Echvi_4573 0.66 +1.6 5,479,811 + Echvi_4573 0.66 +1.0 5,479,811 + Echvi_4573 0.66 +0.8 5,479,812 - Echvi_4573 0.66 -3.4 5,479,812 - Echvi_4573 0.66 -2.6 5,479,812 - Echvi_4573 0.66 -2.1 5,479,812 - Echvi_4573 0.66 -2.0 5,479,812 - Echvi_4573 0.66 -2.5 5,479,812 - Echvi_4573 0.66 -2.9 5,479,812 - Echvi_4573 0.66 -1.2 5,479,812 - Echvi_4573 0.66 -3.6 5,479,812 - Echvi_4573 0.66 -2.0 5,479,812 - Echvi_4573 0.66 -3.0 5,479,812 - Echvi_4573 0.66 -2.8 5,479,817 + Echvi_4573 0.66 -0.3 5,479,818 - Echvi_4573 0.67 -3.5 5,479,818 - Echvi_4573 0.67 -0.8 5,479,818 - Echvi_4573 0.67 -0.5 5,479,818 - Echvi_4573 0.67 -1.2 5,479,818 - Echvi_4573 0.67 -1.7 5,479,818 - Echvi_4573 0.67 -2.2 5,479,864 + Echvi_4573 0.72 +1.4 5,479,875 - Echvi_4573 0.74 -0.8 5,479,895 + Echvi_4573 0.76 -0.4 5,479,896 - Echvi_4573 0.76 -1.3 5,479,896 - Echvi_4573 0.76 -3.7 5,479,896 - Echvi_4573 0.76 -3.7 5,479,914 - Echvi_4573 0.79 -4.4 5,479,928 - Echvi_4573 0.81 -2.7 5,480,023 + +1.4 5,480,025 + +2.0 5,480,025 + +0.6 5,480,025 + +2.3 5,480,026 - -5.3 5,480,069 + +0.1 5,480,069 + -0.4 5,480,070 - -2.4 5,480,084 - -4.3 5,480,094 + -1.2 5,480,099 - -4.6 5,480,254 - -3.3 5,480,272 - -2.0 5,480,274 + -0.4 5,480,275 - -2.8 5,480,275 - -4.2 5,480,275 - -3.5 5,480,365 - -2.0 5,480,407 - -2.1 5,480,413 + -1.0 5,480,414 - -1.2 5,480,414 - -3.0 5,480,419 + -0.1 5,480,441 - -4.7 5,480,517 + Echvi_4574 0.15 -0.2 5,480,522 + Echvi_4574 0.15 -0.4 5,480,535 - Echvi_4574 0.16 -4.4 5,480,582 - Echvi_4574 0.20 -2.7 5,480,622 + Echvi_4574 0.23 -0.4 5,480,629 + Echvi_4574 0.23 +0.4 5,480,696 - Echvi_4574 0.28 -2.3 5,480,707 + Echvi_4574 0.29 +0.5 5,480,718 - Echvi_4574 0.30 -0.2 5,480,887 - Echvi_4574 0.42 -0.2 5,480,887 - Echvi_4574 0.42 -1.1 5,480,888 + Echvi_4574 0.42 +0.1 5,480,888 + Echvi_4574 0.42 -0.5 5,480,923 + Echvi_4574 0.45 -0.1 5,480,951 + Echvi_4574 0.47 +1.4 5,480,952 - Echvi_4574 0.47 -0.6 5,480,954 - Echvi_4574 0.47 -1.5 5,481,330 - Echvi_4574 0.75 -0.6 5,481,330 - Echvi_4574 0.75 +0.2 5,481,418 + Echvi_4574 0.82 +2.0 5,481,518 - Echvi_4574 0.89 -0.8 5,481,560 + +0.1 5,481,560 + -0.3 5,481,560 + +2.0 5,481,564 + +1.0 5,481,565 - +0.5 5,481,565 - +2.4 5,481,630 - -0.8 5,481,630 - -2.3 5,481,630 - +0.1 5,481,636 + +1.1 5,481,637 - +1.4 5,481,637 - -1.3 5,481,661 + +0.1 5,481,664 - +0.5 5,481,668 - -1.2 5,481,674 + -2.1 5,481,674 + -0.2 5,481,677 + -0.6 5,481,677 + -0.0 5,481,715 + -0.8 5,481,715 + +0.7 5,481,716 - -1.5 5,481,720 + +0.4 5,481,720 + +0.1 5,481,720 + -0.9 5,481,720 + -2.9 5,481,721 - -0.3 5,481,721 - +1.3 5,481,813 + -0.3 5,481,813 + -0.8 5,481,814 - +0.2 5,481,860 - Echvi_4575 0.12 -0.4 5,481,874 + Echvi_4575 0.13 +0.4 5,481,927 - Echvi_4575 0.17 +0.8 5,481,927 - Echvi_4575 0.17 +1.6 5,481,934 - Echvi_4575 0.18 +1.0 5,481,945 + Echvi_4575 0.19 -0.0 5,482,192 + Echvi_4575 0.37 -1.2 5,482,192 + Echvi_4575 0.37 -0.2 5,482,193 - Echvi_4575 0.38 +1.1 5,482,193 - Echvi_4575 0.38 -0.0 5,482,204 + Echvi_4575 0.38 +1.1 5,482,329 + Echvi_4575 0.48 +0.5 5,482,377 + Echvi_4575 0.51 -0.4 5,482,431 + Echvi_4575 0.56 -0.7 5,482,432 - Echvi_4575 0.56 -0.2 5,482,505 + Echvi_4575 0.61 +0.3 5,482,541 + Echvi_4575 0.64 +0.3 5,482,623 + Echvi_4575 0.70 +0.4 5,482,653 + Echvi_4575 0.72 -1.5 5,482,653 + Echvi_4575 0.72 -0.8 5,482,653 + Echvi_4575 0.72 -1.6 5,482,653 + Echvi_4575 0.72 -2.1 5,482,653 + Echvi_4575 0.72 -0.0 5,482,653 + Echvi_4575 0.72 +1.2 5,482,654 - Echvi_4575 0.72 +1.7 5,482,654 - Echvi_4575 0.72 -0.8 5,482,654 - Echvi_4575 0.72 +2.6 5,482,654 - Echvi_4575 0.72 -0.6 5,482,654 - Echvi_4575 0.72 -0.1 5,482,654 - Echvi_4575 0.72 -0.6
Or see this region's nucleotide sequence