Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4535

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
5,420,846	+		Echvi_4534	0.15	+0.4
5,420,846	+		Echvi_4534	0.15	+0.4
5,421,068	+		Echvi_4534	0.54	+0.1
5,421,069	-		Echvi_4534	0.54	+0.5
5,421,136	-		Echvi_4534	0.66	+2.0
5,421,136	-		Echvi_4534	0.66	-1.3
5,421,254	+		Echvi_4534	0.86	-1.9
5,421,346	+				-0.3
5,421,347	-				+0.1
5,421,406	-				+0.1
5,421,441	-				-2.4
5,421,471	+				+0.3
5,421,519	+				+0.5
5,421,565	+				-1.0
5,421,565	+				-0.8
5,421,565	+				-1.9
5,421,566	-				-1.7
5,421,569	+				+0.1
5,421,570	-				+0.8
5,421,570	-				+0.1
5,421,610	+				-0.4
5,421,610	+				-0.0
5,421,610	+				+0.8
5,421,610	+				+1.2
5,421,610	+				+0.5
5,421,610	+				-1.5
5,421,611	-				-0.3
5,421,611	-				+0.5
5,421,621	+				+0.8
5,421,621	+				-1.1
5,421,622	-				-1.9
5,421,622	-				-0.2
5,421,652	-				+1.2
5,421,652	-				+0.6
5,421,720	-				-0.0
5,421,724	+				-0.9
5,421,724	+				+0.1
5,421,724	+				-0.6
5,421,724	+				+1.2
5,421,725	-				-0.8
5,421,725	-				+0.3
5,421,770	-				-0.2
5,421,775	+				+1.1
5,421,776	-				+0.8
5,421,803	+				-0.3
5,421,804	-				+0.4
5,421,815	+				+1.5
5,421,816	-				+1.0
5,421,865	+				+0.9
5,421,865	+				-1.1
5,422,040	-		Echvi_4535	0.12	-0.7
5,422,040	-		Echvi_4535	0.12	-1.0
5,422,040	-		Echvi_4535	0.12	-0.4
5,422,093	-		Echvi_4535	0.15	-0.7
5,422,093	-		Echvi_4535	0.15	-0.3
5,422,095	-		Echvi_4535	0.15	-2.7
5,422,157	+		Echvi_4535	0.19	+0.4
5,422,161	-		Echvi_4535	0.19	-1.2
5,422,161	-		Echvi_4535	0.19	+0.2
5,422,197	-		Echvi_4535	0.22	-0.9
5,422,199	+		Echvi_4535	0.22	+0.2
5,422,200	-		Echvi_4535	0.22	-0.6
5,422,466	+		Echvi_4535	0.38	+0.4
5,422,487	+		Echvi_4535	0.39	-0.9
5,422,554	+		Echvi_4535	0.43	-0.3
5,422,554	+		Echvi_4535	0.43	-0.3
5,422,592	+		Echvi_4535	0.46	-0.6
5,422,694	+		Echvi_4535	0.52	+0.7
5,422,706	+		Echvi_4535	0.53	-1.6
5,422,748	+		Echvi_4535	0.55	-0.4
5,422,803	-		Echvi_4535	0.58	-0.9
5,422,803	-		Echvi_4535	0.58	+0.1
5,422,804	+		Echvi_4535	0.59	-0.5
5,423,140	+		Echvi_4535	0.79	-0.0
5,423,350	-				-0.7
5,423,482	-				-0.1
5,423,483	+				+2.0
5,423,484	-				-0.2
5,423,496	-				+0.6
5,423,538	+				-1.0
5,423,542	+				-0.0
5,423,706	+				-0.5
5,423,706	+				-1.1
5,423,707	-				+1.5
5,423,795	+		Echvi_4536	0.11	-0.6
5,423,796	-		Echvi_4536	0.11	+0.4
5,423,800	-		Echvi_4536	0.11	-0.8
5,423,844	+		Echvi_4536	0.15	-0.8
5,423,910	-		Echvi_4536	0.21	-0.0
5,423,910	-		Echvi_4536	0.21	-0.1
5,423,923	-		Echvi_4536	0.23	+0.6
5,423,974	+		Echvi_4536	0.27	-0.1
5,423,975	-		Echvi_4536	0.27	-0.3
5,424,072	+		Echvi_4536	0.36	+2.1
5,424,076	+		Echvi_4536	0.37	+0.3
5,424,076	+		Echvi_4536	0.37	+0.0
5,424,076	+		Echvi_4536	0.37	+1.5
5,424,077	-		Echvi_4536	0.37	-0.6
5,424,077	-		Echvi_4536	0.37	-0.8
5,424,077	-		Echvi_4536	0.37	-0.7
5,424,191	+		Echvi_4536	0.47	+0.2
5,424,191	+		Echvi_4536	0.47	-0.8
5,424,191	+		Echvi_4536	0.47	-0.5
5,424,191	+		Echvi_4536	0.47	+0.3
5,424,191	+		Echvi_4536	0.47	-1.0
5,424,191	+		Echvi_4536	0.47	+0.1
5,424,192	-		Echvi_4536	0.47	-0.8
5,424,192	-		Echvi_4536	0.47	+0.2
5,424,192	-		Echvi_4536	0.47	-0.8
5,424,234	-		Echvi_4536	0.51	+1.2
5,424,234	-		Echvi_4536	0.51	-2.9
5,424,234	-		Echvi_4536	0.51	+0.6
5,424,245	+		Echvi_4536	0.52	-0.5
5,424,356	+		Echvi_4536	0.62	-2.4
5,424,356	+		Echvi_4536	0.62	-0.4
5,424,357	-		Echvi_4536	0.63	+3.0
5,424,362	+		Echvi_4536	0.63	+0.4
5,424,362	+		Echvi_4536	0.63	+0.4
5,424,363	-		Echvi_4536	0.63	-2.1
5,424,366	-		Echvi_4536	0.63	+0.8
5,424,395	+		Echvi_4536	0.66	-1.1
5,424,399	-		Echvi_4536	0.66	-0.9
5,424,435	+		Echvi_4536	0.70	+0.0
5,424,482	+		Echvi_4536	0.74	-0.2
5,424,484	+		Echvi_4536	0.74	+1.3