Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4466 and Echvi_4467 are separated by 50 nucleotides Echvi_4467 and Echvi_4468 are separated by 135 nucleotides Echvi_4468 and Echvi_4469 overlap by 4 nucleotides Echvi_4469 and Echvi_4470 are separated by 15 nucleotides
Echvi_4466: Echvi_4466 - Co/Zn/Cd efflux system component, at 5,340,967 to 5,341,764
_4466
Echvi_4467: Echvi_4467 - Uncharacterized conserved protein, at 5,341,815 to 5,342,201
_4467
Echvi_4468: Echvi_4468 - heavy metal translocating P-type ATPase, at 5,342,337 to 5,344,838
_4468
Echvi_4469: Echvi_4469 - Uncharacterized membrane protein, at 5,344,835 to 5,345,263
_4469
Echvi_4470: Echvi_4470 - Predicted membrane protein, at 5,345,279 to 5,346,169
_4470
Position (kb) 5342
5343
5344
5345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5341.388 kb on - strand, within Echvi_4466 at 5341.404 kb on + strand, within Echvi_4466 at 5341.405 kb on - strand, within Echvi_4466 at 5341.431 kb on + strand, within Echvi_4466 at 5341.462 kb on + strand, within Echvi_4466 at 5341.462 kb on + strand, within Echvi_4466 at 5341.521 kb on + strand, within Echvi_4466 at 5341.530 kb on + strand, within Echvi_4466 at 5341.531 kb on - strand, within Echvi_4466 at 5341.531 kb on - strand, within Echvi_4466 at 5341.533 kb on + strand, within Echvi_4466 at 5341.533 kb on + strand, within Echvi_4466 at 5341.534 kb on - strand, within Echvi_4466 at 5341.540 kb on + strand, within Echvi_4466 at 5341.541 kb on - strand, within Echvi_4466 at 5341.541 kb on - strand, within Echvi_4466 at 5341.594 kb on + strand, within Echvi_4466 at 5341.597 kb on - strand, within Echvi_4466 at 5341.631 kb on + strand, within Echvi_4466 at 5341.631 kb on + strand, within Echvi_4466 at 5341.631 kb on + strand, within Echvi_4466 at 5341.631 kb on + strand, within Echvi_4466 at 5341.651 kb on - strand, within Echvi_4466 at 5341.651 kb on - strand, within Echvi_4466 at 5341.683 kb on + strand, within Echvi_4466 at 5341.767 kb on + strand at 5341.768 kb on - strand at 5341.803 kb on - strand at 5341.819 kb on - strand at 5341.880 kb on + strand, within Echvi_4467 at 5341.881 kb on - strand, within Echvi_4467 at 5341.898 kb on + strand, within Echvi_4467 at 5341.898 kb on + strand, within Echvi_4467 at 5341.898 kb on + strand, within Echvi_4467 at 5341.899 kb on - strand, within Echvi_4467 at 5341.924 kb on - strand, within Echvi_4467 at 5341.924 kb on - strand, within Echvi_4467 at 5341.956 kb on + strand, within Echvi_4467 at 5341.956 kb on + strand, within Echvi_4467 at 5341.956 kb on + strand, within Echvi_4467 at 5341.956 kb on + strand, within Echvi_4467 at 5341.957 kb on - strand, within Echvi_4467 at 5341.986 kb on - strand, within Echvi_4467 at 5342.024 kb on + strand, within Echvi_4467 at 5342.024 kb on + strand, within Echvi_4467 at 5342.024 kb on + strand, within Echvi_4467 at 5342.024 kb on + strand, within Echvi_4467 at 5342.089 kb on - strand, within Echvi_4467 at 5342.102 kb on + strand, within Echvi_4467 at 5342.168 kb on + strand at 5342.169 kb on - strand at 5342.194 kb on + strand at 5342.194 kb on + strand at 5342.194 kb on + strand at 5342.195 kb on - strand at 5342.195 kb on - strand at 5342.235 kb on + strand at 5342.238 kb on - strand at 5342.238 kb on - strand at 5342.266 kb on + strand at 5342.267 kb on - strand at 5342.272 kb on + strand at 5342.314 kb on + strand at 5342.314 kb on + strand at 5342.314 kb on + strand at 5342.347 kb on + strand at 5342.373 kb on + strand at 5342.374 kb on - strand at 5342.376 kb on + strand at 5342.376 kb on + strand at 5342.377 kb on - strand at 5342.380 kb on - strand at 5342.388 kb on - strand at 5342.406 kb on + strand at 5342.418 kb on + strand at 5342.430 kb on - strand at 5342.456 kb on + strand at 5342.475 kb on + strand at 5342.499 kb on - strand at 5342.504 kb on + strand at 5342.624 kb on + strand, within Echvi_4468 at 5342.624 kb on + strand, within Echvi_4468 at 5342.627 kb on + strand, within Echvi_4468 at 5342.652 kb on + strand, within Echvi_4468 at 5342.652 kb on + strand, within Echvi_4468 at 5342.813 kb on + strand, within Echvi_4468 at 5342.855 kb on + strand, within Echvi_4468 at 5342.900 kb on - strand, within Echvi_4468 at 5342.931 kb on - strand, within Echvi_4468 at 5342.984 kb on + strand, within Echvi_4468 at 5342.984 kb on + strand, within Echvi_4468 at 5342.984 kb on + strand, within Echvi_4468 at 5343.025 kb on + strand, within Echvi_4468 at 5343.025 kb on + strand, within Echvi_4468 at 5343.025 kb on + strand, within Echvi_4468 at 5343.026 kb on - strand, within Echvi_4468 at 5343.028 kb on - strand, within Echvi_4468 at 5343.028 kb on - strand, within Echvi_4468 at 5343.047 kb on + strand, within Echvi_4468 at 5343.053 kb on + strand, within Echvi_4468 at 5343.053 kb on + strand, within Echvi_4468 at 5343.062 kb on + strand, within Echvi_4468 at 5343.177 kb on + strand, within Echvi_4468 at 5343.177 kb on + strand, within Echvi_4468 at 5343.177 kb on + strand, within Echvi_4468 at 5343.207 kb on + strand, within Echvi_4468 at 5343.216 kb on + strand, within Echvi_4468 at 5343.216 kb on + strand, within Echvi_4468 at 5343.217 kb on - strand, within Echvi_4468 at 5343.225 kb on + strand, within Echvi_4468 at 5343.226 kb on - strand, within Echvi_4468 at 5343.255 kb on + strand, within Echvi_4468 at 5343.326 kb on + strand, within Echvi_4468 at 5343.326 kb on + strand, within Echvi_4468 at 5343.364 kb on - strand, within Echvi_4468 at 5343.417 kb on + strand, within Echvi_4468 at 5343.418 kb on - strand, within Echvi_4468 at 5343.434 kb on - strand, within Echvi_4468 at 5343.549 kb on - strand, within Echvi_4468 at 5343.615 kb on + strand, within Echvi_4468 at 5343.641 kb on + strand, within Echvi_4468 at 5343.654 kb on + strand, within Echvi_4468 at 5343.654 kb on + strand, within Echvi_4468 at 5343.654 kb on + strand, within Echvi_4468 at 5343.655 kb on - strand, within Echvi_4468 at 5343.655 kb on - strand, within Echvi_4468 at 5343.655 kb on - strand, within Echvi_4468 at 5343.799 kb on - strand, within Echvi_4468 at 5343.887 kb on + strand, within Echvi_4468 at 5343.887 kb on + strand, within Echvi_4468 at 5343.914 kb on + strand, within Echvi_4468 at 5343.968 kb on - strand, within Echvi_4468 at 5344.142 kb on - strand, within Echvi_4468 at 5344.154 kb on - strand, within Echvi_4468 at 5344.190 kb on + strand, within Echvi_4468 at 5344.192 kb on + strand, within Echvi_4468 at 5344.192 kb on + strand, within Echvi_4468 at 5344.193 kb on - strand, within Echvi_4468 at 5344.215 kb on + strand, within Echvi_4468 at 5344.320 kb on - strand, within Echvi_4468 at 5344.323 kb on - strand, within Echvi_4468 at 5344.360 kb on - strand, within Echvi_4468 at 5344.403 kb on + strand, within Echvi_4468 at 5344.465 kb on + strand, within Echvi_4468 at 5344.466 kb on - strand, within Echvi_4468 at 5344.466 kb on - strand, within Echvi_4468 at 5344.494 kb on + strand, within Echvi_4468 at 5344.508 kb on + strand, within Echvi_4468 at 5344.509 kb on - strand, within Echvi_4468 at 5344.511 kb on + strand, within Echvi_4468 at 5344.575 kb on + strand, within Echvi_4468 at 5344.576 kb on - strand, within Echvi_4468 at 5344.589 kb on + strand at 5344.590 kb on - strand at 5344.650 kb on + strand at 5344.650 kb on + strand at 5344.650 kb on + strand at 5344.652 kb on + strand at 5344.683 kb on + strand at 5344.716 kb on + strand at 5344.717 kb on - strand at 5344.718 kb on + strand at 5344.718 kb on + strand at 5344.889 kb on + strand, within Echvi_4469 at 5344.889 kb on + strand, within Echvi_4469 at 5344.889 kb on + strand, within Echvi_4469 at 5344.894 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.926 kb on + strand, within Echvi_4469 at 5344.927 kb on - strand, within Echvi_4469 at 5344.927 kb on - strand, within Echvi_4469 at 5344.952 kb on + strand, within Echvi_4469 at 5344.973 kb on - strand, within Echvi_4469 at 5344.975 kb on + strand, within Echvi_4469 at 5345.027 kb on - strand, within Echvi_4469 at 5345.063 kb on - strand, within Echvi_4469 at 5345.110 kb on + strand, within Echvi_4469 at 5345.148 kb on + strand, within Echvi_4469 at 5345.148 kb on + strand, within Echvi_4469 at 5345.149 kb on - strand, within Echvi_4469 at 5345.149 kb on - strand, within Echvi_4469 at 5345.149 kb on - strand, within Echvi_4469 at 5345.149 kb on - strand, within Echvi_4469 at 5345.149 kb on - strand, within Echvi_4469 at 5345.149 kb on - strand, within Echvi_4469 at 5345.210 kb on + strand, within Echvi_4469 at 5345.225 kb on + strand at 5345.244 kb on - strand at 5345.283 kb on - strand at 5345.289 kb on + strand at 5345.292 kb on + strand at 5345.292 kb on + strand at 5345.293 kb on - strand at 5345.447 kb on - strand, within Echvi_4470 at 5345.447 kb on - strand, within Echvi_4470 at 5345.468 kb on - strand, within Echvi_4470 at 5345.493 kb on + strand, within Echvi_4470 at 5345.524 kb on + strand, within Echvi_4470 at 5345.525 kb on - strand, within Echvi_4470 at 5345.618 kb on + strand, within Echvi_4470 at 5345.619 kb on - strand, within Echvi_4470 at 5345.714 kb on + strand, within Echvi_4470 at 5345.764 kb on + strand, within Echvi_4470 at 5345.764 kb on + strand, within Echvi_4470 at 5345.814 kb on + strand, within Echvi_4470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 5,341,388 - Echvi_4466 0.53 +0.5 5,341,404 + Echvi_4466 0.55 +0.6 5,341,405 - Echvi_4466 0.55 -0.7 5,341,431 + Echvi_4466 0.58 -0.1 5,341,462 + Echvi_4466 0.62 +1.0 5,341,462 + Echvi_4466 0.62 +0.0 5,341,521 + Echvi_4466 0.69 +0.4 5,341,530 + Echvi_4466 0.71 -1.1 5,341,531 - Echvi_4466 0.71 -0.8 5,341,531 - Echvi_4466 0.71 -2.3 5,341,533 + Echvi_4466 0.71 +1.2 5,341,533 + Echvi_4466 0.71 +0.5 5,341,534 - Echvi_4466 0.71 -1.0 5,341,540 + Echvi_4466 0.72 +1.4 5,341,541 - Echvi_4466 0.72 -1.1 5,341,541 - Echvi_4466 0.72 -1.3 5,341,594 + Echvi_4466 0.79 -2.8 5,341,597 - Echvi_4466 0.79 +1.6 5,341,631 + Echvi_4466 0.83 -0.0 5,341,631 + Echvi_4466 0.83 +0.9 5,341,631 + Echvi_4466 0.83 +0.3 5,341,631 + Echvi_4466 0.83 +0.1 5,341,651 - Echvi_4466 0.86 -1.7 5,341,651 - Echvi_4466 0.86 -0.3 5,341,683 + Echvi_4466 0.90 +0.7 5,341,767 + +0.1 5,341,768 - -0.7 5,341,803 - -0.8 5,341,819 - -1.2 5,341,880 + Echvi_4467 0.17 +1.7 5,341,881 - Echvi_4467 0.17 -0.5 5,341,898 + Echvi_4467 0.21 -0.2 5,341,898 + Echvi_4467 0.21 -0.9 5,341,898 + Echvi_4467 0.21 +0.8 5,341,899 - Echvi_4467 0.22 -0.3 5,341,924 - Echvi_4467 0.28 -3.2 5,341,924 - Echvi_4467 0.28 -2.8 5,341,956 + Echvi_4467 0.36 -0.1 5,341,956 + Echvi_4467 0.36 -0.3 5,341,956 + Echvi_4467 0.36 -0.5 5,341,956 + Echvi_4467 0.36 +0.0 5,341,957 - Echvi_4467 0.37 -1.3 5,341,986 - Echvi_4467 0.44 -1.3 5,342,024 + Echvi_4467 0.54 -0.0 5,342,024 + Echvi_4467 0.54 -0.6 5,342,024 + Echvi_4467 0.54 +0.5 5,342,024 + Echvi_4467 0.54 +0.8 5,342,089 - Echvi_4467 0.71 -1.0 5,342,102 + Echvi_4467 0.74 +0.3 5,342,168 + -0.2 5,342,169 - +0.7 5,342,194 + +0.9 5,342,194 + -0.4 5,342,194 + -0.4 5,342,195 - -3.4 5,342,195 - -2.3 5,342,235 + -0.4 5,342,238 - -1.5 5,342,238 - -2.0 5,342,266 + -1.3 5,342,267 - -1.3 5,342,272 + +0.8 5,342,314 + -0.0 5,342,314 + -0.7 5,342,314 + -0.9 5,342,347 + +0.1 5,342,373 + +2.2 5,342,374 - -0.8 5,342,376 + +0.5 5,342,376 + +1.0 5,342,377 - +0.1 5,342,380 - -3.5 5,342,388 - -2.2 5,342,406 + -1.1 5,342,418 + -3.3 5,342,430 - +1.0 5,342,456 + +1.1 5,342,475 + -0.6 5,342,499 - +0.4 5,342,504 + +2.1 5,342,624 + Echvi_4468 0.11 +0.1 5,342,624 + Echvi_4468 0.11 -2.3 5,342,627 + Echvi_4468 0.12 -1.3 5,342,652 + Echvi_4468 0.13 +2.6 5,342,652 + Echvi_4468 0.13 +0.2 5,342,813 + Echvi_4468 0.19 +0.5 5,342,855 + Echvi_4468 0.21 +0.2 5,342,900 - Echvi_4468 0.23 -1.0 5,342,931 - Echvi_4468 0.24 -0.2 5,342,984 + Echvi_4468 0.26 +0.2 5,342,984 + Echvi_4468 0.26 -0.8 5,342,984 + Echvi_4468 0.26 -1.3 5,343,025 + Echvi_4468 0.27 +0.8 5,343,025 + Echvi_4468 0.27 +1.5 5,343,025 + Echvi_4468 0.27 +0.3 5,343,026 - Echvi_4468 0.28 -0.5 5,343,028 - Echvi_4468 0.28 -1.9 5,343,028 - Echvi_4468 0.28 -0.9 5,343,047 + Echvi_4468 0.28 +0.0 5,343,053 + Echvi_4468 0.29 -1.5 5,343,053 + Echvi_4468 0.29 -0.3 5,343,062 + Echvi_4468 0.29 -0.1 5,343,177 + Echvi_4468 0.34 -1.9 5,343,177 + Echvi_4468 0.34 +0.4 5,343,177 + Echvi_4468 0.34 -0.8 5,343,207 + Echvi_4468 0.35 -0.4 5,343,216 + Echvi_4468 0.35 -0.4 5,343,216 + Echvi_4468 0.35 -0.4 5,343,217 - Echvi_4468 0.35 -2.5 5,343,225 + Echvi_4468 0.35 -0.3 5,343,226 - Echvi_4468 0.36 -3.1 5,343,255 + Echvi_4468 0.37 -1.2 5,343,326 + Echvi_4468 0.40 +0.8 5,343,326 + Echvi_4468 0.40 -0.3 5,343,364 - Echvi_4468 0.41 +0.2 5,343,417 + Echvi_4468 0.43 +0.1 5,343,418 - Echvi_4468 0.43 -0.0 5,343,434 - Echvi_4468 0.44 -0.3 5,343,549 - Echvi_4468 0.48 -1.7 5,343,615 + Echvi_4468 0.51 +0.9 5,343,641 + Echvi_4468 0.52 +1.3 5,343,654 + Echvi_4468 0.53 -0.0 5,343,654 + Echvi_4468 0.53 -0.4 5,343,654 + Echvi_4468 0.53 +0.4 5,343,655 - Echvi_4468 0.53 -2.3 5,343,655 - Echvi_4468 0.53 +0.4 5,343,655 - Echvi_4468 0.53 +0.4 5,343,799 - Echvi_4468 0.58 -0.0 5,343,887 + Echvi_4468 0.62 +0.4 5,343,887 + Echvi_4468 0.62 -0.7 5,343,914 + Echvi_4468 0.63 -1.4 5,343,968 - Echvi_4468 0.65 +1.7 5,344,142 - Echvi_4468 0.72 +0.4 5,344,154 - Echvi_4468 0.73 -2.5 5,344,190 + Echvi_4468 0.74 +0.5 5,344,192 + Echvi_4468 0.74 +0.2 5,344,192 + Echvi_4468 0.74 +0.8 5,344,193 - Echvi_4468 0.74 -2.2 5,344,215 + Echvi_4468 0.75 +1.3 5,344,320 - Echvi_4468 0.79 -1.8 5,344,323 - Echvi_4468 0.79 -0.3 5,344,360 - Echvi_4468 0.81 -2.5 5,344,403 + Echvi_4468 0.83 -1.3 5,344,465 + Echvi_4468 0.85 -0.3 5,344,466 - Echvi_4468 0.85 -1.6 5,344,466 - Echvi_4468 0.85 +2.8 5,344,494 + Echvi_4468 0.86 +0.2 5,344,508 + Echvi_4468 0.87 +0.5 5,344,509 - Echvi_4468 0.87 +0.4 5,344,511 + Echvi_4468 0.87 +0.6 5,344,575 + Echvi_4468 0.89 -0.6 5,344,576 - Echvi_4468 0.89 -0.5 5,344,589 + +0.4 5,344,590 - -1.0 5,344,650 + -0.3 5,344,650 + +0.1 5,344,650 + -0.6 5,344,652 + +0.2 5,344,683 + -0.8 5,344,716 + +0.1 5,344,717 - +0.7 5,344,718 + +0.7 5,344,718 + +1.2 5,344,889 + Echvi_4469 0.13 +2.0 5,344,889 + Echvi_4469 0.13 +0.3 5,344,889 + Echvi_4469 0.13 +1.4 5,344,894 + Echvi_4469 0.14 +1.0 5,344,926 + Echvi_4469 0.21 +0.2 5,344,926 + Echvi_4469 0.21 +0.4 5,344,926 + Echvi_4469 0.21 -1.0 5,344,926 + Echvi_4469 0.21 +0.6 5,344,926 + Echvi_4469 0.21 +1.0 5,344,926 + Echvi_4469 0.21 +0.7 5,344,926 + Echvi_4469 0.21 +0.8 5,344,926 + Echvi_4469 0.21 +1.2 5,344,926 + Echvi_4469 0.21 +2.2 5,344,927 - Echvi_4469 0.21 -1.3 5,344,927 - Echvi_4469 0.21 -1.7 5,344,952 + Echvi_4469 0.27 +0.3 5,344,973 - Echvi_4469 0.32 -1.0 5,344,975 + Echvi_4469 0.33 +0.8 5,345,027 - Echvi_4469 0.45 -1.0 5,345,063 - Echvi_4469 0.53 -0.8 5,345,110 + Echvi_4469 0.64 +0.4 5,345,148 + Echvi_4469 0.73 -0.3 5,345,148 + Echvi_4469 0.73 +1.0 5,345,149 - Echvi_4469 0.73 +0.2 5,345,149 - Echvi_4469 0.73 -1.1 5,345,149 - Echvi_4469 0.73 +1.0 5,345,149 - Echvi_4469 0.73 +1.0 5,345,149 - Echvi_4469 0.73 -2.5 5,345,149 - Echvi_4469 0.73 -3.1 5,345,210 + Echvi_4469 0.87 -0.1 5,345,225 + +1.0 5,345,244 - -1.6 5,345,283 - -3.1 5,345,289 + -0.1 5,345,292 + +0.6 5,345,292 + +0.6 5,345,293 - -2.1 5,345,447 - Echvi_4470 0.19 -2.0 5,345,447 - Echvi_4470 0.19 -1.5 5,345,468 - Echvi_4470 0.21 -1.6 5,345,493 + Echvi_4470 0.24 +0.8 5,345,524 + Echvi_4470 0.27 +0.4 5,345,525 - Echvi_4470 0.28 -2.2 5,345,618 + Echvi_4470 0.38 -0.6 5,345,619 - Echvi_4470 0.38 -3.8 5,345,714 + Echvi_4470 0.49 +0.1 5,345,764 + Echvi_4470 0.54 -0.9 5,345,764 + Echvi_4470 0.54 +0.6 5,345,814 + Echvi_4470 0.60 -0.3
Or see this region's nucleotide sequence