Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4402

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
5,261,639	+		Echvi_4401	0.24	+3.0
5,261,672	-		Echvi_4401	0.27	+2.0
5,261,700	-		Echvi_4401	0.30	+2.0
5,261,743	+		Echvi_4401	0.34	+3.2
5,261,802	-		Echvi_4401	0.39	+0.9
5,261,881	+		Echvi_4401	0.46	+3.4
5,261,950	+		Echvi_4401	0.52	+3.1
5,261,968	+		Echvi_4401	0.54	+3.2
5,261,972	+		Echvi_4401	0.54	+1.2
5,261,973	-		Echvi_4401	0.54	+2.7
5,261,973	-		Echvi_4401	0.54	+1.3
5,262,012	-		Echvi_4401	0.58	+1.0
5,262,012	-		Echvi_4401	0.58	+1.6
5,262,039	+		Echvi_4401	0.60	+2.5
5,262,050	-		Echvi_4401	0.61	+0.5
5,262,076	-		Echvi_4401	0.64	+1.3
5,262,084	+		Echvi_4401	0.64	+4.3
5,262,084	+		Echvi_4401	0.64	+3.1
5,262,087	+		Echvi_4401	0.65	+2.1
5,262,088	-		Echvi_4401	0.65	+1.7
5,262,088	-		Echvi_4401	0.65	+0.2
5,262,088	-		Echvi_4401	0.65	+0.3
5,262,097	-		Echvi_4401	0.66	+1.3
5,262,140	+		Echvi_4401	0.69	+2.6
5,262,141	-		Echvi_4401	0.69	+0.7
5,262,163	+		Echvi_4401	0.71	+2.8
5,262,163	+		Echvi_4401	0.71	+3.1
5,262,163	+		Echvi_4401	0.71	+2.9
5,262,163	+		Echvi_4401	0.71	+3.0
5,262,185	+		Echvi_4401	0.73	+2.3
5,262,185	+		Echvi_4401	0.73	+3.0
5,262,185	+		Echvi_4401	0.73	+3.6
5,262,185	+		Echvi_4401	0.73	+3.2
5,262,186	-		Echvi_4401	0.73	+0.9
5,262,186	-		Echvi_4401	0.73	+0.1
5,262,186	-		Echvi_4401	0.73	+0.6
5,262,300	+		Echvi_4401	0.84	+3.0
5,262,300	+		Echvi_4401	0.84	+3.5
5,262,300	+		Echvi_4401	0.84	+2.6
5,262,301	-		Echvi_4401	0.84	+1.3
5,262,301	-		Echvi_4401	0.84	+0.7
5,262,335	+		Echvi_4401	0.87	+3.5
5,262,335	+		Echvi_4401	0.87	+3.0
5,262,348	-		Echvi_4401	0.88	+0.8
5,262,348	-		Echvi_4401	0.88	+1.6
5,262,383	+				+1.8
5,262,387	-				+2.1
5,262,431	+				+4.9
5,262,432	-				+1.7
5,262,459	+				+2.4
5,262,460	-				+1.2
5,262,460	-				+3.2
5,262,460	-				-0.4
5,262,520	+				+2.2
5,262,520	+				+1.7
5,262,520	+				+1.5
5,262,525	+				+3.2
5,262,529	+				+2.6
5,262,549	+				+2.2
5,262,549	+				+3.4
5,262,549	+				+3.3
5,262,696	+				+2.0
5,262,699	+				+2.0
5,262,723	+				+2.2
5,262,816	+				+3.0
5,262,837	+				+2.5
5,262,837	+				+3.5
5,262,837	+				+2.9
5,262,837	+				+2.9
5,262,837	+				+3.6
5,262,837	+				+2.5
5,262,838	-				-0.4
5,262,838	-				+2.6
5,262,838	-				+1.3
5,262,839	+				+2.8
5,262,889	+		Echvi_4402	0.11	+3.1
5,262,930	+		Echvi_4402	0.13	+3.0
5,262,939	+		Echvi_4402	0.13	+3.4
5,262,940	-		Echvi_4402	0.13	+2.5
5,262,956	-		Echvi_4402	0.14	+2.2
5,263,026	+		Echvi_4402	0.17	+3.8
5,263,125	+		Echvi_4402	0.21	+3.0
5,263,125	+		Echvi_4402	0.21	+3.1
5,263,126	-		Echvi_4402	0.21	+1.0
5,263,126	-		Echvi_4402	0.21	+1.3
5,263,170	+		Echvi_4402	0.22	+3.8
5,263,175	-		Echvi_4402	0.23	+2.0
5,263,275	-		Echvi_4402	0.26	+2.6
5,263,356	+		Echvi_4402	0.30	+2.9
5,263,382	+		Echvi_4402	0.31	+4.3
5,263,382	+		Echvi_4402	0.31	+2.9
5,263,411	+		Echvi_4402	0.32	+1.8
5,263,411	+		Echvi_4402	0.32	+2.7
5,263,411	+		Echvi_4402	0.32	+3.3
5,263,461	+		Echvi_4402	0.34	+3.6
5,263,590	+		Echvi_4402	0.39	+3.0
5,263,592	+		Echvi_4402	0.39	+4.5
5,263,592	+		Echvi_4402	0.39	+2.0
5,263,592	+		Echvi_4402	0.39	+0.8
5,263,593	-		Echvi_4402	0.39	+1.6
5,263,653	+		Echvi_4402	0.41	+3.4
5,263,705	+		Echvi_4402	0.43	+3.5
5,263,709	+		Echvi_4402	0.43	+3.1
5,263,709	+		Echvi_4402	0.43	+3.1
5,263,709	+		Echvi_4402	0.43	+2.8
5,263,712	+		Echvi_4402	0.43	+2.9
5,263,712	+		Echvi_4402	0.43	+2.7
5,263,712	+		Echvi_4402	0.43	+3.1
5,263,712	+		Echvi_4402	0.43	+3.3
5,263,712	+		Echvi_4402	0.43	+2.6
5,263,712	+		Echvi_4402	0.43	+2.8
5,263,712	+		Echvi_4402	0.43	+2.1
5,263,741	+		Echvi_4402	0.44	+2.8
5,263,773	+		Echvi_4402	0.46	+2.8
5,263,810	+		Echvi_4402	0.47	+1.8
5,264,017	+		Echvi_4402	0.55	+2.4
5,264,017	+		Echvi_4402	0.55	+2.9
5,264,043	+		Echvi_4402	0.56	+2.7
5,264,097	+		Echvi_4402	0.58	+2.9
5,264,120	+		Echvi_4402	0.59	+3.3
5,264,121	-		Echvi_4402	0.59	+1.1
5,264,236	+		Echvi_4402	0.64	+2.6
5,264,237	-		Echvi_4402	0.64	+1.2
5,264,253	+		Echvi_4402	0.64	+1.5
5,264,312	+		Echvi_4402	0.67	+2.9
5,264,358	+		Echvi_4402	0.68	+1.3
5,264,358	+		Echvi_4402	0.68	+4.6
5,264,439	-		Echvi_4402	0.71	+0.7
5,264,491	-		Echvi_4402	0.73	+1.9
5,264,537	-		Echvi_4402	0.75	+3.0
5,264,546	+		Echvi_4402	0.76	+2.7
5,264,546	+		Echvi_4402	0.76	+2.6
5,264,546	+		Echvi_4402	0.76	+4.2
5,264,546	+		Echvi_4402	0.76	-0.3
5,264,554	-		Echvi_4402	0.76	+3.0
5,264,633	+		Echvi_4402	0.79	+3.8
5,264,633	+		Echvi_4402	0.79	+1.6
5,264,666	+		Echvi_4402	0.80	+4.4
5,264,687	+		Echvi_4402	0.81	+3.1
5,264,688	-		Echvi_4402	0.81	+2.4
5,264,691	+				+3.0
5,264,821	+		Echvi_4402	0.86	+2.0
5,264,851	+		Echvi_4402	0.87	+2.9
5,264,852	-		Echvi_4402	0.87	+1.7
5,264,852	-		Echvi_4402	0.87	+2.4
5,264,886	+		Echvi_4402	0.89	-1.0
5,264,887	-		Echvi_4402	0.89	+3.0
5,264,889	+		Echvi_4402	0.89	+4.9
5,264,895	+		Echvi_4402	0.89	+3.2
5,265,177	+				+3.1
5,265,177	+				+0.4
5,265,177	+				+2.0
5,265,177	+				+2.9
5,265,177	+				+3.2
5,265,177	+				+1.0
5,265,177	+				+3.1
5,265,178	-				+1.7
5,265,181	+				+2.9
5,265,181	+				+3.7
5,265,182	-				+1.5
5,265,182	-				+2.3
5,265,221	+				+3.5
5,265,222	-				-1.9
5,265,224	+				+3.6
5,265,224	+				+2.8
5,265,351	+				+2.9
5,265,374	+				+3.5
5,265,375	-				-1.3
5,265,375	-				-1.1
5,265,375	-				+0.6
5,265,424	-				-2.1
5,265,481	+		Echvi_4403	0.17	+2.8
5,265,527	+		Echvi_4403	0.32	+3.3
5,265,527	+		Echvi_4403	0.32	+2.0
5,265,529	+		Echvi_4403	0.33	+2.4
5,265,529	+		Echvi_4403	0.33	+3.0
5,265,529	+		Echvi_4403	0.33	+3.0
5,265,529	+		Echvi_4403	0.33	+2.5
5,265,583	-		Echvi_4403	0.51	-0.5
5,265,617	-		Echvi_4403	0.62	+0.3
5,265,628	-		Echvi_4403	0.65	-2.0
5,265,628	-		Echvi_4403	0.65	+0.8
5,265,628	-		Echvi_4403	0.65	+1.7
5,265,628	-		Echvi_4403	0.65	+0.1
5,265,628	-		Echvi_4403	0.65	+0.4
5,265,682	+		Echvi_4403	0.83	+0.6
5,265,696	+		Echvi_4403	0.88	+2.6
5,265,696	+		Echvi_4403	0.88	+2.8
5,265,706	-				-1.7
5,265,709	+				+2.7
5,265,710	-				-0.5
5,265,710	-				-1.1
5,265,741	-				-0.0
5,265,747	+				+2.3
5,265,747	+				+2.6
5,265,751	+				+2.7
5,265,769	+				+2.6
5,265,786	-				+0.3
5,265,786	-				+0.3
5,265,873	+				+2.9
5,265,874	-				-1.0
5,265,876	+				+4.2
5,265,876	+				+3.2
5,265,877	-				+0.0
5,265,891	+				+2.4
5,265,919	-				+1.0
5,265,930	+				+2.2
5,265,930	+				+3.6
5,265,931	-				+0.6
5,265,931	-				+0.2
5,265,995	+				+2.6
5,266,056	+		Echvi_4404	0.14	+2.9
5,266,057	-		Echvi_4404	0.14	+1.5
5,266,057	-		Echvi_4404	0.14	+0.9
5,266,057	-		Echvi_4404	0.14	+1.4
5,266,067	-		Echvi_4404	0.15	+2.2
5,266,071	+		Echvi_4404	0.15	+1.0
5,266,072	-		Echvi_4404	0.15	+0.4
5,266,072	-		Echvi_4404	0.15	+0.5
5,266,072	-		Echvi_4404	0.15	+0.3
5,266,092	+		Echvi_4404	0.16	+3.1
5,266,092	+		Echvi_4404	0.16	+3.3
5,266,092	+		Echvi_4404	0.16	+3.4
5,266,092	+		Echvi_4404	0.16	+3.5
5,266,092	+		Echvi_4404	0.16	+3.1
5,266,092	+		Echvi_4404	0.16	+1.2
5,266,092	+		Echvi_4404	0.16	+2.5
5,266,092	+		Echvi_4404	0.16	+2.9
5,266,093	-		Echvi_4404	0.17	+1.4
5,266,093	-		Echvi_4404	0.17	-0.6
5,266,093	-		Echvi_4404	0.17	-0.1
5,266,093	-		Echvi_4404	0.17	+1.0
5,266,093	-		Echvi_4404	0.17	+0.0
5,266,093	-		Echvi_4404	0.17	-0.1
5,266,093	-		Echvi_4404	0.17	+0.7
5,266,094	+		Echvi_4404	0.17	+3.0
5,266,094	+		Echvi_4404	0.17	+4.4
5,266,094	+		Echvi_4404	0.17	+2.7
5,266,095	-		Echvi_4404	0.17	+1.6
5,266,095	-		Echvi_4404	0.17	+1.0
5,266,129	-		Echvi_4404	0.19	-0.0
5,266,158	-		Echvi_4404	0.21	+1.7
5,266,172	+		Echvi_4404	0.23	+2.3
5,266,173	-		Echvi_4404	0.23	-2.4
5,266,173	-		Echvi_4404	0.23	+1.0