Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4400

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
5,259,018	+		Echvi_4399	0.31	+3.0
5,259,018	+		Echvi_4399	0.31	+2.5
5,259,021	-		Echvi_4399	0.31	+0.7
5,259,023	+		Echvi_4399	0.31	+2.9
5,259,038	+		Echvi_4399	0.32	+3.9
5,259,072	+		Echvi_4399	0.35	+2.1
5,259,091	-		Echvi_4399	0.36	+1.5
5,259,310	+		Echvi_4399	0.53	+2.4
5,259,325	+		Echvi_4399	0.54	+2.6
5,259,329	-		Echvi_4399	0.55	+1.8
5,259,329	-		Echvi_4399	0.55	+2.6
5,259,330	+		Echvi_4399	0.55	+3.6
5,259,331	-		Echvi_4399	0.55	-0.0
5,259,336	+		Echvi_4399	0.55	+4.4
5,259,349	+		Echvi_4399	0.56	+2.7
5,259,350	-		Echvi_4399	0.56	+4.6
5,259,357	-		Echvi_4399	0.57	+4.4
5,259,361	+				+4.6
5,259,362	-		Echvi_4399	0.57	+2.5
5,259,362	-		Echvi_4399	0.57	+2.1
5,259,402	+		Echvi_4399	0.60	+1.7
5,259,529	-		Echvi_4399	0.70	+1.5
5,259,594	+		Echvi_4399	0.75	+3.0
5,259,597	+		Echvi_4399	0.75	+2.8
5,259,646	+		Echvi_4399	0.79	+2.7
5,259,793	+				+2.5
5,259,797	+				+2.1
5,259,877	+				+2.9
5,259,888	+				+3.1
5,259,895	+				+2.6
5,259,903	+				+1.9
5,259,903	+				+1.7
5,259,938	-				+1.2
5,259,952	-				+0.2
5,259,980	+				+1.0
5,259,981	-				-2.8
5,259,985	+				+0.3
5,259,985	+				+0.1
5,259,990	+				+2.3
5,259,990	+				+1.7
5,259,990	+				+1.3
5,259,991	-				+1.0
5,260,011	+				+2.0
5,260,013	+				+2.0
5,260,044	-				-0.2
5,260,077	-		Echvi_4400	0.11	+0.5
5,260,080	+		Echvi_4400	0.11	+1.4
5,260,105	-		Echvi_4400	0.13	+1.3
5,260,187	+		Echvi_4400	0.19	+0.9
5,260,187	+		Echvi_4400	0.19	+0.8
5,260,187	+		Echvi_4400	0.19	+1.0
5,260,187	+		Echvi_4400	0.19	+3.0
5,260,188	-		Echvi_4400	0.19	-0.1
5,260,189	+		Echvi_4400	0.19	+1.9
5,260,189	+		Echvi_4400	0.19	+1.8
5,260,189	+		Echvi_4400	0.19	+0.6
5,260,189	+		Echvi_4400	0.19	+0.3
5,260,189	+		Echvi_4400	0.19	+1.0
5,260,190	-		Echvi_4400	0.19	+1.8
5,260,190	-		Echvi_4400	0.19	+0.4
5,260,191	+		Echvi_4400	0.19	+1.2
5,260,191	+		Echvi_4400	0.19	+0.7
5,260,191	+		Echvi_4400	0.19	+0.7
5,260,191	+		Echvi_4400	0.19	+0.1
5,260,191	+		Echvi_4400	0.19	+0.2
5,260,191	+		Echvi_4400	0.19	+0.1
5,260,191	+		Echvi_4400	0.19	+0.4
5,260,192	-		Echvi_4400	0.19	+1.3
5,260,193	+		Echvi_4400	0.19	+0.9
5,260,193	+		Echvi_4400	0.19	+1.4
5,260,193	+		Echvi_4400	0.19	+1.2
5,260,193	+		Echvi_4400	0.19	+1.5
5,260,193	+		Echvi_4400	0.19	+2.2
5,260,193	+		Echvi_4400	0.19	+1.7
5,260,197	+		Echvi_4400	0.20	+0.6
5,260,197	+		Echvi_4400	0.20	+1.1
5,260,197	+		Echvi_4400	0.20	-1.0
5,260,197	+		Echvi_4400	0.20	+1.6
5,260,197	+		Echvi_4400	0.20	+1.8
5,260,197	+		Echvi_4400	0.20	+0.5
5,260,208	+		Echvi_4400	0.21	+2.3
5,260,208	+		Echvi_4400	0.21	+2.2
5,260,217	+		Echvi_4400	0.21	-0.0
5,260,263	-		Echvi_4400	0.25	+1.1
5,260,310	+		Echvi_4400	0.28	+1.6
5,260,311	-		Echvi_4400	0.28	+1.4
5,260,332	-		Echvi_4400	0.30	-0.0
5,260,332	-		Echvi_4400	0.30	+2.0
5,260,332	-		Echvi_4400	0.30	+2.0
5,260,335	-		Echvi_4400	0.30	-0.9
5,260,342	-		Echvi_4400	0.31	+1.5
5,260,362	-		Echvi_4400	0.32	+0.3
5,260,394	+		Echvi_4400	0.35	+1.6
5,260,406	-		Echvi_4400	0.36	+0.5
5,260,406	-		Echvi_4400	0.36	+1.3
5,260,424	+		Echvi_4400	0.37	+2.7
5,260,424	+		Echvi_4400	0.37	+1.6
5,260,425	-		Echvi_4400	0.37	-0.6
5,260,451	+		Echvi_4400	0.39	+1.8
5,260,472	+		Echvi_4400	0.41	+2.6
5,260,476	-		Echvi_4400	0.41	+0.6
5,260,508	+		Echvi_4400	0.43	+1.9
5,260,509	-		Echvi_4400	0.43	+0.1
5,260,509	-		Echvi_4400	0.43	+0.5
5,260,512	+		Echvi_4400	0.44	-0.4
5,260,578	+		Echvi_4400	0.49	+0.8
5,260,579	-		Echvi_4400	0.49	-0.1
5,260,586	+		Echvi_4400	0.49	+0.9
5,260,586	+		Echvi_4400	0.49	+1.3
5,260,587	-		Echvi_4400	0.49	-0.1
5,260,607	+		Echvi_4400	0.51	+1.7
5,260,607	+		Echvi_4400	0.51	+1.5
5,260,608	-		Echvi_4400	0.51	+0.6
5,260,608	-		Echvi_4400	0.51	-1.5
5,260,621	+		Echvi_4400	0.52	+1.5
5,260,621	+		Echvi_4400	0.52	+0.9
5,260,621	+		Echvi_4400	0.52	+1.0
5,260,622	-		Echvi_4400	0.52	-0.1
5,260,622	-		Echvi_4400	0.52	+1.6
5,260,622	-		Echvi_4400	0.52	-0.0
5,260,622	-		Echvi_4400	0.52	-0.1
5,260,625	+		Echvi_4400	0.52	+1.6
5,260,626	-		Echvi_4400	0.52	+3.7
5,260,648	+		Echvi_4400	0.54	+1.5
5,260,659	+		Echvi_4400	0.55	+1.2
5,260,659	+		Echvi_4400	0.55	+0.9
5,260,727	+		Echvi_4400	0.60	+1.3
5,260,728	-		Echvi_4400	0.60	-1.0
5,260,740	-		Echvi_4400	0.61	-1.1
5,260,765	+		Echvi_4400	0.63	+1.5
5,260,778	+		Echvi_4400	0.64	+2.0
5,260,807	-		Echvi_4400	0.66	+0.2
5,260,840	+		Echvi_4400	0.68	+3.3
5,260,847	+		Echvi_4400	0.69	+1.1
5,260,847	+		Echvi_4400	0.69	+1.7
5,260,847	+		Echvi_4400	0.69	+1.7
5,260,848	-		Echvi_4400	0.69	-1.4
5,260,848	-		Echvi_4400	0.69	-0.6
5,260,855	+		Echvi_4400	0.70	+2.7
5,260,878	+		Echvi_4400	0.71	+0.5
5,260,934	+		Echvi_4400	0.76	+1.7
5,260,934	+		Echvi_4400	0.76	+0.6
5,260,934	+		Echvi_4400	0.76	+1.8
5,260,934	+		Echvi_4400	0.76	+2.8
5,260,935	-		Echvi_4400	0.76	-0.2
5,260,935	-		Echvi_4400	0.76	+0.9
5,260,935	-		Echvi_4400	0.76	-0.1
5,260,962	+		Echvi_4400	0.78	+0.7
5,260,962	+		Echvi_4400	0.78	+0.8
5,260,968	-		Echvi_4400	0.78	+0.4
5,260,974	-		Echvi_4400	0.79	-0.6
5,261,138	+				+1.7
5,261,139	-				-1.7
5,261,139	-				-0.2
5,261,143	+				+0.5
5,261,153	+				+1.6
5,261,154	-				+1.4
5,261,154	-				+0.4
5,261,161	+				+1.8
5,261,161	+				+1.9
5,261,161	+				+2.1
5,261,161	+				+1.3
5,261,161	+				+2.7
5,261,161	+				+2.9
5,261,162	-				+1.1
5,261,162	-				+2.0
5,261,162	-				+0.9
5,261,162	-				+1.0
5,261,198	-				+4.3
5,261,198	-				+0.8
5,261,348	-				+0.6
5,261,398	+				+2.7
5,261,398	+				+1.7
5,261,398	+				+1.7
5,261,408	+				+2.9
5,261,409	-				-1.1
5,261,414	+				+3.1
5,261,417	+				+1.9
5,261,417	+				+3.4
5,261,417	+				+5.0
5,261,420	+				+2.2
5,261,435	+				+3.6
5,261,436	-				+1.7
5,261,463	-				+0.6
5,261,465	+				+2.5
5,261,465	+				+4.2
5,261,466	-				+1.6
5,261,466	-				+0.2
5,261,479	+		Echvi_4401	0.10	+2.4
5,261,507	-		Echvi_4401	0.13	+1.1
5,261,509	+		Echvi_4401	0.13	+2.6
5,261,510	-		Echvi_4401	0.13	+1.4
5,261,510	-		Echvi_4401	0.13	+1.1
5,261,536	+		Echvi_4401	0.15	+3.0
5,261,536	+		Echvi_4401	0.15	+4.2
5,261,536	+		Echvi_4401	0.15	+4.8
5,261,537	-		Echvi_4401	0.15	+0.4
5,261,557	+		Echvi_4401	0.17	+4.0
5,261,639	+		Echvi_4401	0.24	+3.0
5,261,672	-		Echvi_4401	0.27	+2.0
5,261,700	-		Echvi_4401	0.30	+2.0
5,261,743	+		Echvi_4401	0.34	+3.2
5,261,802	-		Echvi_4401	0.39	+0.9
5,261,881	+		Echvi_4401	0.46	+3.4
5,261,950	+		Echvi_4401	0.52	+3.1
5,261,968	+		Echvi_4401	0.54	+3.2
5,261,972	+		Echvi_4401	0.54	+1.2
5,261,973	-		Echvi_4401	0.54	+2.7
5,261,973	-		Echvi_4401	0.54	+1.3
5,262,012	-		Echvi_4401	0.58	+1.0
5,262,012	-		Echvi_4401	0.58	+1.6
5,262,039	+		Echvi_4401	0.60	+2.5
5,262,050	-		Echvi_4401	0.61	+0.5
5,262,076	-		Echvi_4401	0.64	+1.3
5,262,084	+		Echvi_4401	0.64	+4.3
5,262,084	+		Echvi_4401	0.64	+3.1
5,262,087	+		Echvi_4401	0.65	+2.1
5,262,088	-		Echvi_4401	0.65	+1.7
5,262,088	-		Echvi_4401	0.65	+0.2
5,262,088	-		Echvi_4401	0.65	+0.3
5,262,097	-		Echvi_4401	0.66	+1.3
5,262,140	+		Echvi_4401	0.69	+2.6
5,262,141	-		Echvi_4401	0.69	+0.7
5,262,163	+		Echvi_4401	0.71	+2.8
5,262,163	+		Echvi_4401	0.71	+3.1
5,262,163	+		Echvi_4401	0.71	+2.9
5,262,163	+		Echvi_4401	0.71	+3.0
5,262,185	+		Echvi_4401	0.73	+2.3
5,262,185	+		Echvi_4401	0.73	+3.0
5,262,185	+		Echvi_4401	0.73	+3.6
5,262,185	+		Echvi_4401	0.73	+3.2
5,262,186	-		Echvi_4401	0.73	+0.9
5,262,186	-		Echvi_4401	0.73	+0.1
5,262,186	-		Echvi_4401	0.73	+0.6