Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4239

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
5,083,455	+		Echvi_4238	0.63	+1.3
5,083,455	+		Echvi_4238	0.63	-1.6
5,083,456	-		Echvi_4238	0.63	+0.3
5,083,456	-		Echvi_4238	0.63	-0.6
5,083,495	-		Echvi_4238	0.69	+1.0
5,083,579	+		Echvi_4238	0.80	+0.8
5,083,625	-		Echvi_4238	0.87	-2.4
5,083,665	+				-1.1
5,083,718	-				+1.6
5,083,734	-				+0.7
5,083,740	+				-1.0
5,083,741	-				+0.7
5,083,742	+				-0.9
5,083,743	-				+1.0
5,083,743	-				-0.7
5,083,746	+				+0.6
5,083,747	-				-1.0
5,083,747	-				-0.1
5,083,797	-				-2.3
5,083,814	-				+1.7
5,083,817	-				-0.5
5,083,869	-				-0.4
5,083,872	-				-0.9
5,083,951	-				+1.9
5,084,007	+				+1.4
5,084,008	-				+1.1
5,084,114	+				-0.4
5,084,114	+				-1.0
5,084,153	-				-0.0
5,084,153	-				-1.3
5,084,313	-				-0.1
5,084,372	+				+0.9
5,084,395	+		Echvi_4239	0.11	+1.0
5,084,395	+		Echvi_4239	0.11	+0.6
5,084,396	-		Echvi_4239	0.11	+0.8
5,084,396	-		Echvi_4239	0.11	+1.5
5,084,407	+		Echvi_4239	0.14	-1.1
5,084,408	-		Echvi_4239	0.15	-0.5
5,084,422	+		Echvi_4239	0.18	-0.3
5,084,422	+		Echvi_4239	0.18	-1.5
5,084,422	+		Echvi_4239	0.18	-1.3
5,084,427	+		Echvi_4239	0.20	+0.6
5,084,427	+		Echvi_4239	0.20	+1.5
5,084,428	-		Echvi_4239	0.20	+2.2
5,084,428	-		Echvi_4239	0.20	+0.0
5,084,432	+		Echvi_4239	0.21	-1.0
5,084,432	+		Echvi_4239	0.21	+0.2
5,084,432	+		Echvi_4239	0.21	-1.4
5,084,433	-		Echvi_4239	0.22	+1.8
5,084,433	-		Echvi_4239	0.22	-0.1
5,084,437	+		Echvi_4239	0.23	-0.1
5,084,437	+		Echvi_4239	0.23	+0.9
5,084,437	+		Echvi_4239	0.23	+0.5
5,084,437	+		Echvi_4239	0.23	+1.4
5,084,437	+		Echvi_4239	0.23	-0.3
5,084,437	+		Echvi_4239	0.23	+0.9
5,084,437	+		Echvi_4239	0.23	-0.2
5,084,438	-		Echvi_4239	0.23	+1.2
5,084,438	-		Echvi_4239	0.23	-0.9
5,084,438	-		Echvi_4239	0.23	-0.7
5,084,438	-		Echvi_4239	0.23	+0.3
5,084,440	+		Echvi_4239	0.24	+1.1
5,084,440	+		Echvi_4239	0.24	+0.9
5,084,441	-		Echvi_4239	0.24	-0.5
5,084,442	+		Echvi_4239	0.24	+0.9
5,084,443	-		Echvi_4239	0.24	-0.7
5,084,494	+		Echvi_4239	0.39	+0.8
5,084,494	+		Echvi_4239	0.39	-1.3
5,084,494	+		Echvi_4239	0.39	-0.2
5,084,494	+		Echvi_4239	0.39	+1.4
5,084,495	-				+0.6
5,084,495	-		Echvi_4239	0.39	+1.2
5,084,495	-		Echvi_4239	0.39	-0.0
5,084,495	-		Echvi_4239	0.39	+2.3
5,084,495	-		Echvi_4239	0.39	-1.4
5,084,496	+		Echvi_4239	0.39	+0.5
5,084,497	-		Echvi_4239	0.39	+0.4
5,084,556	-		Echvi_4239	0.56	+0.7
5,084,556	-		Echvi_4239	0.56	-0.4
5,084,559	+		Echvi_4239	0.57	-0.1
5,084,560	-		Echvi_4239	0.57	-0.0
5,084,560	-		Echvi_4239	0.57	-0.9
5,084,581	+		Echvi_4239	0.63	-0.7
5,084,597	-		Echvi_4239	0.68	+0.9
5,084,602	-		Echvi_4239	0.69	+0.3
5,084,602	-		Echvi_4239	0.69	-0.7
5,084,621	+		Echvi_4239	0.74	+1.9
5,084,623	-		Echvi_4239	0.75	-3.1
5,084,623	-		Echvi_4239	0.75	-0.7
5,084,626	+		Echvi_4239	0.76	-0.2
5,084,722	+		Echvi_4240	0.13	+0.4
5,084,757	-		Echvi_4240	0.21	+0.6
5,084,769	-		Echvi_4240	0.24	+0.4
5,084,785	+		Echvi_4240	0.28	+1.1
5,084,792	-		Echvi_4240	0.29	+1.2
5,084,792	-		Echvi_4240	0.29	+0.1
5,084,793	+		Echvi_4240	0.29	-1.4
5,084,793	+		Echvi_4240	0.29	-0.5
5,084,794	-		Echvi_4240	0.30	+0.1
5,084,794	-		Echvi_4240	0.30	-0.2
5,084,794	-		Echvi_4240	0.30	+1.5
5,084,797	+		Echvi_4240	0.30	-0.1
5,084,797	+		Echvi_4240	0.30	-0.9
5,084,798	-		Echvi_4240	0.31	+0.6
5,084,803	+		Echvi_4240	0.32	+1.3
5,084,804	-		Echvi_4240	0.32	-0.6
5,084,807	+		Echvi_4240	0.33	-0.1
5,084,808	-		Echvi_4240	0.33	-0.1
5,084,854	+		Echvi_4240	0.43	-1.2
5,084,856	+		Echvi_4240	0.44	-0.1
5,084,857	-		Echvi_4240	0.44	-0.5
5,084,857	-		Echvi_4240	0.44	-0.4
5,084,911	-		Echvi_4240	0.56	-0.1
5,084,936	+		Echvi_4240	0.62	+0.6
5,084,958	+		Echvi_4240	0.67	+0.2
5,084,958	+		Echvi_4240	0.67	-0.3
5,084,965	-		Echvi_4240	0.68	-0.7
5,085,052	+		Echvi_4240	0.88	-1.9
5,085,125	+				+0.0
5,085,131	+				-0.4
5,085,131	+				-0.5
5,085,132	-				-0.2
5,085,132	-				-1.8
5,085,143	+				-0.2
5,085,144	-				+1.0
5,085,155	-				-0.2
5,085,157	-				-0.4
5,085,174	-				-0.7
5,085,174	-				+0.9
5,085,235	-				-0.5
5,085,391	+		Echvi_4241	0.13	-0.6
5,085,391	+		Echvi_4241	0.13	+0.0
5,085,410	-		Echvi_4241	0.14	+0.1
5,085,452	+		Echvi_4241	0.17	+0.4
5,085,453	-		Echvi_4241	0.17	+3.9
5,085,470	+		Echvi_4241	0.18	-0.2
5,085,525	+		Echvi_4241	0.21	-1.0
5,085,587	+		Echvi_4241	0.25	+1.9