Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3947

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,728,277	+		Echvi_3946	0.17	-1.5
4,728,277	+		Echvi_3946	0.17	+0.9
4,728,280	-		Echvi_3946	0.17	-0.7
4,728,281	+		Echvi_3946	0.17	+3.9
4,728,292	-		Echvi_3946	0.18	+0.1
4,728,303	-		Echvi_3946	0.19	+2.9
4,728,303	-		Echvi_3946	0.19	+0.4
4,728,307	-		Echvi_3946	0.19	+1.9
4,728,362	-		Echvi_3946	0.24	-0.9
4,728,482	+		Echvi_3946	0.34	-1.3
4,728,482	+		Echvi_3946	0.34	-0.9
4,728,483	-		Echvi_3946	0.34	-0.1
4,728,501	+		Echvi_3946	0.36	+0.0
4,728,502	-		Echvi_3946	0.36	-0.1
4,728,502	-		Echvi_3946	0.36	-0.8
4,728,526	+		Echvi_3946	0.38	+0.9
4,728,574	+		Echvi_3946	0.42	-0.3
4,728,661	-		Echvi_3946	0.49	+1.2
4,728,698	-		Echvi_3946	0.53	-0.5
4,728,711	+		Echvi_3946	0.54	-1.9
4,728,745	+		Echvi_3946	0.57	+2.1
4,728,745	+		Echvi_3946	0.57	-0.6
4,728,745	+		Echvi_3946	0.57	-0.1
4,728,745	+		Echvi_3946	0.57	-1.3
4,728,746	-		Echvi_3946	0.57	+2.3
4,728,746	-		Echvi_3946	0.57	-1.1
4,728,850	-		Echvi_3946	0.66	+1.5
4,728,850	-		Echvi_3946	0.66	+0.6
4,728,885	+		Echvi_3946	0.69	+0.3
4,728,924	+		Echvi_3946	0.72	-2.2
4,728,955	+		Echvi_3946	0.75	-0.5
4,728,997	-		Echvi_3946	0.78	-0.1
4,729,041	+		Echvi_3946	0.82	-0.9
4,729,071	-		Echvi_3946	0.85	-0.8
4,729,076	-		Echvi_3946	0.85	+0.4
4,729,207	-				-0.6
4,729,207	-				-0.3
4,729,211	+				+0.5
4,729,249	+				-0.0
4,729,249	+				+3.6
4,729,250	-				-1.6
4,729,252	+				-0.2
4,729,267	-				+0.5
4,729,272	+				+0.6
4,729,279	+				+0.8
4,729,279	+				-1.7
4,729,280	-				+0.5
4,729,280	-				+0.6
4,729,281	+				-1.3
4,729,290	+				-0.4
4,729,355	+				+0.5
4,729,356	-				-0.9
4,729,356	-				+0.5
4,729,356	-				+1.0
4,729,532	+		Echvi_3947	0.17	+0.3
4,729,532	+		Echvi_3947	0.17	+0.9
4,729,568	+		Echvi_3947	0.19	-0.5
4,729,569	-		Echvi_3947	0.19	-0.3
4,729,623	-		Echvi_3947	0.22	-1.0
4,729,733	-		Echvi_3947	0.29	-0.1
4,729,849	+		Echvi_3947	0.36	+0.6
4,729,979	+		Echvi_3947	0.44	-0.5
4,729,980	-		Echvi_3947	0.44	+1.5
4,729,980	-		Echvi_3947	0.44	+0.1
4,729,980	-		Echvi_3947	0.44	+1.4
4,729,980	-		Echvi_3947	0.44	+0.3
4,730,015	+		Echvi_3947	0.46	+1.9
4,730,016	-		Echvi_3947	0.46	+0.5
4,730,075	+		Echvi_3947	0.50	+1.1
4,730,131	-		Echvi_3947	0.53	-0.7
4,730,237	-		Echvi_3947	0.59	-1.2
4,730,243	-		Echvi_3947	0.60	-0.1
4,730,253	+				-0.1
4,730,254	-		Echvi_3947	0.61	-0.6
4,730,367	-		Echvi_3947	0.67	-0.0
4,730,405	+		Echvi_3947	0.70	-0.1
4,730,405	+		Echvi_3947	0.70	+1.9
4,730,406	-		Echvi_3947	0.70	+1.1
4,730,409	-		Echvi_3947	0.70	+1.2
4,730,414	-		Echvi_3947	0.70	+0.7
4,730,512	+		Echvi_3947	0.76	+0.3
4,730,603	+		Echvi_3947	0.82	+0.4
4,730,648	+		Echvi_3947	0.84	+0.3
4,730,658	-		Echvi_3947	0.85	+0.4
4,730,728	+		Echvi_3947	0.89	+0.2
4,730,820	-				+0.2
4,730,842	+				-0.2
4,730,843	-				+1.2
4,730,927	+				-0.9
4,730,928	-				+0.7
4,730,981	+				-0.9
4,731,017	-				-1.1
4,731,061	+				-1.4
4,731,062	-				-1.1
4,731,357	+		Echvi_3948	0.15	+0.3
4,731,357	+		Echvi_3948	0.15	+0.2
4,731,358	-		Echvi_3948	0.15	+0.6
4,731,367	+		Echvi_3948	0.16	-0.3
4,731,368	-		Echvi_3948	0.16	+0.2
4,731,368	-		Echvi_3948	0.16	+0.3
4,731,376	+		Echvi_3948	0.16	-1.4
4,731,428	+		Echvi_3948	0.19	-0.5
4,731,502	-		Echvi_3948	0.24	-0.4
4,731,652	-		Echvi_3948	0.32	+1.7
4,731,683	+		Echvi_3948	0.34	+0.5
4,731,755	-		Echvi_3948	0.38	+0.1
4,731,755	-		Echvi_3948	0.38	-0.6
4,731,756	+		Echvi_3948	0.38	-0.2
4,731,756	+		Echvi_3948	0.38	+0.9
4,731,756	+		Echvi_3948	0.38	+0.2
4,731,756	+		Echvi_3948	0.38	+0.3
4,731,756	+		Echvi_3948	0.38	-0.1
4,731,756	+		Echvi_3948	0.38	-0.1
4,731,756	+		Echvi_3948	0.38	-0.5
4,731,757	-		Echvi_3948	0.38	+2.2
4,731,757	-		Echvi_3948	0.38	-0.0
4,731,757	-		Echvi_3948	0.38	-1.9
4,731,824	-		Echvi_3948	0.42	-3.0
4,731,832	-		Echvi_3948	0.42	+1.1