Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3939

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,715,191	-		Echvi_3937	0.47	-2.5
4,715,297	+				+0.6
4,715,359	+				-1.0
4,715,411	+				-0.1
4,715,411	+				-0.4
4,715,411	+				-1.0
4,715,411	+				-0.2
4,715,498	+				+1.0
4,715,565	+		Echvi_3938	0.17	+0.4
4,715,747	-		Echvi_3938	0.64	+1.1
4,715,801	+		Echvi_3938	0.77	-1.0
4,715,841	-		Echvi_3938	0.88	-1.2
4,715,879	-				+0.7
4,715,879	-				+0.2
4,715,882	+				+0.2
4,715,887	-				-1.4
4,715,928	+				-0.6
4,715,946	+				+0.0
4,715,948	+				+2.6
4,715,952	-				-0.0
4,715,952	-				+0.0
4,715,958	+				+1.2
4,716,014	+				-0.4
4,716,053	-				-0.3
4,716,069	+				-1.7
4,716,145	+				-0.2
4,716,160	+				+0.2
4,716,168	+				+1.4
4,716,168	+				-0.2
4,716,169	-				-0.1
4,716,355	+				+0.0
4,716,405	+				-1.1
4,716,432	+		Echvi_3939	0.11	+0.9
4,716,658	+		Echvi_3939	0.20	-2.2
4,716,658	+		Echvi_3939	0.20	+0.2
4,716,660	+		Echvi_3939	0.20	-1.5
4,716,660	+		Echvi_3939	0.20	+0.4
4,716,664	+		Echvi_3939	0.20	+0.9
4,716,664	+		Echvi_3939	0.20	-1.1
4,716,666	+		Echvi_3939	0.20	+0.6
4,716,666	+		Echvi_3939	0.20	+0.2
4,716,666	+		Echvi_3939	0.20	+0.3
4,716,666	+		Echvi_3939	0.20	+0.4
4,716,754	+		Echvi_3939	0.24	+0.9
4,716,822	+		Echvi_3939	0.26	+0.5
4,716,823	-		Echvi_3939	0.26	+3.9
4,716,829	+		Echvi_3939	0.27	-0.6
4,716,831	+		Echvi_3939	0.27	+0.0
4,716,915	+		Echvi_3939	0.30	+0.0
4,716,967	+		Echvi_3939	0.32	+1.2
4,716,967	+		Echvi_3939	0.32	+0.0
4,716,996	+		Echvi_3939	0.33	-0.1
4,717,000	-		Echvi_3939	0.34	-0.2
4,717,096	-		Echvi_3939	0.37	+2.2
4,717,098	+		Echvi_3939	0.37	+1.9
4,717,099	-		Echvi_3939	0.38	+0.9
4,717,126	+		Echvi_3939	0.39	-0.3
4,717,143	+		Echvi_3939	0.39	-1.1
4,717,143	+		Echvi_3939	0.39	+1.9
4,717,175	-		Echvi_3939	0.41	+0.3
4,717,180	+		Echvi_3939	0.41	-0.1
4,717,180	+		Echvi_3939	0.41	-1.1
4,717,180	+		Echvi_3939	0.41	+0.6
4,717,278	-		Echvi_3939	0.45	+0.7
4,717,306	+		Echvi_3939	0.46	+0.2
4,717,356	+		Echvi_3939	0.48	+1.9
4,717,360	+		Echvi_3939	0.48	+1.4
4,717,471	+		Echvi_3939	0.52	+0.1
4,717,474	+		Echvi_3939	0.53	+0.0
4,717,586	+		Echvi_3939	0.57	+0.3
4,717,586	+		Echvi_3939	0.57	+0.3
4,717,587	-		Echvi_3939	0.57	+3.1
4,717,588	+		Echvi_3939	0.57	-1.3
4,717,589	-		Echvi_3939	0.57	+0.4
4,717,680	+		Echvi_3939	0.61	+0.9
4,717,705	+		Echvi_3939	0.62	+0.4
4,717,769	+		Echvi_3939	0.64	+1.0
4,717,788	+		Echvi_3939	0.65	-0.3
4,717,791	+		Echvi_3939	0.65	-0.7
4,717,792	-		Echvi_3939	0.65	+1.1
4,717,795	+		Echvi_3939	0.66	+1.1
4,717,795	+		Echvi_3939	0.66	-1.2
4,717,795	+		Echvi_3939	0.66	-0.2
4,717,806	+		Echvi_3939	0.66	-0.0
4,717,806	+		Echvi_3939	0.66	-1.3
4,717,838	+		Echvi_3939	0.67	+0.5
4,717,851	+		Echvi_3939	0.68	-0.4
4,718,139	+		Echvi_3939	0.79	+0.6
4,718,217	+		Echvi_3939	0.83	+0.3
4,718,218	-		Echvi_3939	0.83	+0.4
4,718,279	+		Echvi_3939	0.85	-0.3
4,718,284	+		Echvi_3939	0.85	-0.1
4,718,284	+		Echvi_3939	0.85	-1.3
4,718,285	-		Echvi_3939	0.85	-0.1
4,718,364	+		Echvi_3939	0.88	-0.0
4,718,391	+		Echvi_3939	0.90	-0.1
4,718,485	+				+0.3
4,718,501	+				+1.6
4,718,502	-				-0.1
4,718,645	+				-0.3
4,718,645	+				+0.1
4,718,646	-				+1.0
4,718,724	+				-0.6
4,718,724	+				-0.8
4,718,724	+				-0.8
4,718,724	+				+0.2
4,719,017	+				+1.4
4,719,293	-		Echvi_3940	0.22	+1.5
4,719,597	+		Echvi_3940	0.46	+3.4