Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3783

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,511,838	-				-0.1
4,511,864	-				-2.2
4,511,864	-				-0.6
4,511,864	-				-2.3
4,511,864	-				-0.5
4,511,880	+				-0.0
4,511,901	-				-1.6
4,511,903	-				-1.3
4,511,919	-				+0.0
4,511,984	+		Echvi_3782	0.12	+0.3
4,511,984	+		Echvi_3782	0.12	-0.3
4,512,013	+		Echvi_3782	0.17	+0.9
4,512,236	+		Echvi_3782	0.52	+0.2
4,512,242	+		Echvi_3782	0.53	-0.7
4,512,301	+		Echvi_3782	0.63	-0.5
4,512,301	+		Echvi_3782	0.63	-0.4
4,512,302	-		Echvi_3782	0.63	+2.1
4,512,303	+		Echvi_3782	0.63	+0.3
4,512,303	+		Echvi_3782	0.63	+0.0
4,512,303	+		Echvi_3782	0.63	+0.4
4,512,304	-		Echvi_3782	0.63	+0.4
4,512,304	-		Echvi_3782	0.63	+0.9
4,512,304	-		Echvi_3782	0.63	+0.4
4,512,306	-		Echvi_3782	0.64	-0.8
4,512,306	-		Echvi_3782	0.64	-0.4
4,512,392	+		Echvi_3782	0.78	-0.8
4,512,497	+				+1.0
4,512,686	-				-1.5
4,512,779	-				-1.3
4,512,783	+				+0.8
4,512,783	+				-0.4
4,512,801	-				-2.5
4,512,819	-				-1.1
4,512,819	-				-0.3
4,512,823	+				+0.1
4,512,839	-				+2.3
4,512,843	+				+0.5
4,512,843	+				-0.3
4,512,844	-				-0.4
4,512,844	-				+0.7
4,512,907	-				-2.2
4,512,909	-				+1.2
4,512,909	-				-1.5
4,512,909	-				-0.2
4,512,914	-				-0.2
4,512,927	-				-0.1
4,512,943	+				+0.7
4,512,944	-				+0.2
4,512,957	-				+0.7
4,512,998	+		Echvi_3783	0.11	-1.3
4,512,999	-		Echvi_3783	0.11	+0.9
4,513,035	+		Echvi_3783	0.14	+0.6
4,513,038	-		Echvi_3783	0.14	+0.0
4,513,053	+		Echvi_3783	0.15	+0.1
4,513,056	-		Echvi_3783	0.15	+0.2
4,513,056	-		Echvi_3783	0.15	-0.1
4,513,129	-		Echvi_3783	0.19	+1.9
4,513,176	-		Echvi_3783	0.22	-0.4
4,513,190	+		Echvi_3783	0.23	+0.9
4,513,191	-		Echvi_3783	0.23	-0.1
4,513,191	-		Echvi_3783	0.23	+0.5
4,513,191	-		Echvi_3783	0.23	+0.3
4,513,191	-		Echvi_3783	0.23	+2.3
4,513,203	-		Echvi_3783	0.23	-0.6
4,513,225	-		Echvi_3783	0.25	-1.7
4,513,304	+		Echvi_3783	0.29	-0.7
4,513,304	+		Echvi_3783	0.29	-0.4
4,513,305	-		Echvi_3783	0.29	+1.2
4,513,305	-		Echvi_3783	0.29	+2.3
4,513,323	+		Echvi_3783	0.30	+0.5
4,513,324	-		Echvi_3783	0.31	+1.4
4,513,346	+		Echvi_3783	0.32	+2.1
4,513,346	+		Echvi_3783	0.32	+1.3
4,513,346	+		Echvi_3783	0.32	+1.6
4,513,372	-		Echvi_3783	0.33	-1.0
4,513,392	-		Echvi_3783	0.35	+1.0
4,513,392	-		Echvi_3783	0.35	+0.1
4,513,401	-		Echvi_3783	0.35	+0.3
4,513,524	-		Echvi_3783	0.42	-1.8
4,513,524	-		Echvi_3783	0.42	-0.2
4,513,554	-		Echvi_3783	0.44	+0.0
4,513,574	+		Echvi_3783	0.45	-0.6
4,513,610	+		Echvi_3783	0.47	+1.3
4,513,610	+		Echvi_3783	0.47	+1.1
4,513,614	+		Echvi_3783	0.48	+0.3
4,513,635	-		Echvi_3783	0.49	+0.3
4,513,662	+		Echvi_3783	0.50	-1.1
4,513,664	+		Echvi_3783	0.50	-0.0
4,513,664	+		Echvi_3783	0.50	+0.4
4,513,665	-		Echvi_3783	0.51	-0.4
4,513,665	-		Echvi_3783	0.51	+1.2
4,513,665	-		Echvi_3783	0.51	+0.7
4,513,665	-		Echvi_3783	0.51	-1.1
4,513,665	-		Echvi_3783	0.51	-0.6
4,513,686	+		Echvi_3783	0.52	-1.1
4,513,686	+		Echvi_3783	0.52	-0.0
4,513,686	+		Echvi_3783	0.52	+0.3
4,513,686	+		Echvi_3783	0.52	-0.6
4,513,686	+		Echvi_3783	0.52	+0.7
4,513,687	-		Echvi_3783	0.52	-0.3
4,513,710	-		Echvi_3783	0.53	+0.2
4,513,759	+		Echvi_3783	0.56	+3.6
4,513,759	+		Echvi_3783	0.56	+1.2
4,513,759	+		Echvi_3783	0.56	-0.3
4,513,760	-		Echvi_3783	0.56	-1.5
4,513,760	-		Echvi_3783	0.56	+1.5
4,513,783	-		Echvi_3783	0.57	+0.4
4,513,783	-		Echvi_3783	0.57	-0.3
4,513,863	+		Echvi_3783	0.62	-1.1
4,513,904	+		Echvi_3783	0.65	+0.5
4,513,905	-		Echvi_3783	0.65	+1.6
4,513,940	+		Echvi_3783	0.67	+0.9
4,513,946	+		Echvi_3783	0.67	-0.3
4,513,974	+		Echvi_3783	0.69	+1.4
4,513,975	-		Echvi_3783	0.69	-1.7
4,513,975	-		Echvi_3783	0.69	-1.1
4,513,975	-		Echvi_3783	0.69	+0.2
4,513,994	+		Echvi_3783	0.70	+0.4
4,514,280	-		Echvi_3783	0.87	+0.9
4,514,280	-		Echvi_3783	0.87	-0.1
4,514,354	+				+0.5
4,514,354	+				-1.0
4,514,358	+				-0.7
4,514,358	+				+1.0
4,514,397	-				-1.6
4,514,397	-				+0.3
4,514,420	-				+0.5
4,514,420	-				-1.5
4,514,447	+				+1.0
4,514,505	+				+0.4
4,514,505	+				+0.3
4,514,506	-				+0.5
4,514,506	-				+0.6
4,514,506	-				-0.1
4,514,507	+				-0.6
4,514,507	+				-1.7
4,514,507	+				+0.0
4,514,507	+				-0.9
4,514,508	-				+1.9
4,514,508	-				-1.0
4,514,514	+				+0.2
4,514,514	+				-1.3
4,514,536	+				+0.3
4,514,536	+				+0.1
4,514,537	-				-1.2
4,514,537	-				-0.9
4,514,537	-				-0.1
4,514,537	-				-0.0
4,514,542	-				+0.5
4,514,550	+				-0.9
4,514,551	-				-0.7
4,514,556	-				+0.4
4,514,586	+				+1.9
4,514,587	-				+0.4
4,514,587	-				+0.5
4,514,587	-				-2.1
4,514,587	-				+0.2
4,514,639	+		Echvi_3784	0.16	-0.9
4,514,640	-		Echvi_3784	0.16	+0.9
4,514,640	-		Echvi_3784	0.16	+1.1
4,514,640	-		Echvi_3784	0.16	+0.3
4,514,640	-		Echvi_3784	0.16	+1.5
4,514,697	+		Echvi_3784	0.25	+0.6
4,514,698	-		Echvi_3784	0.25	-0.1
4,514,762	+		Echvi_3784	0.34	-0.5
4,514,763	-		Echvi_3784	0.35	-0.2
4,514,773	+		Echvi_3784	0.36	-0.5
4,514,774	-		Echvi_3784	0.36	+0.3
4,514,837	+		Echvi_3784	0.46	+0.2
4,514,838	-		Echvi_3784	0.46	+0.2
4,514,838	-		Echvi_3784	0.46	-0.0
4,514,838	-		Echvi_3784	0.46	-0.3
4,514,842	-		Echvi_3784	0.47	-0.1
4,514,842	-		Echvi_3784	0.47	-0.9
4,514,869	+		Echvi_3784	0.51	+0.3
4,514,869	+		Echvi_3784	0.51	+0.1
4,514,870	-		Echvi_3784	0.51	-0.4
4,514,874	+		Echvi_3784	0.51	+0.9
4,514,874	+		Echvi_3784	0.51	-1.0
4,514,874	+		Echvi_3784	0.51	+0.6
4,514,874	+		Echvi_3784	0.51	+0.5
4,514,875	-		Echvi_3784	0.52	-0.3
4,514,875	-		Echvi_3784	0.52	-0.4
4,514,875	-		Echvi_3784	0.52	-0.3
4,514,875	-		Echvi_3784	0.52	-0.6
4,514,935	-		Echvi_3784	0.61	+0.3
4,514,939	-		Echvi_3784	0.61	+0.8
4,514,964	+		Echvi_3784	0.65	-1.3
4,514,997	-		Echvi_3784	0.70	+0.5
4,515,000	-		Echvi_3784	0.70	-1.8
4,515,000	-		Echvi_3784	0.70	+1.4
4,515,001	+		Echvi_3784	0.71	+0.1
4,515,001	+		Echvi_3784	0.71	-0.5
4,515,001	+		Echvi_3784	0.71	-0.0
4,515,002	-		Echvi_3784	0.71	+0.8
4,515,002	-		Echvi_3784	0.71	+0.0
4,515,028	+		Echvi_3784	0.75	+0.4
4,515,029	-		Echvi_3784	0.75	-2.4
4,515,029	-		Echvi_3784	0.75	-2.0
4,515,075	-		Echvi_3784	0.82	-3.0
4,515,088	+		Echvi_3784	0.84	-0.0
4,515,089	-		Echvi_3784	0.84	+1.1
4,515,142	-				+1.1
4,515,169	-				+1.1
4,515,173	+				-1.1
4,515,174	-				+0.9
4,515,177	+				+0.5
4,515,177	+				-0.2
4,515,178	-				+0.6
4,515,178	-				-0.5
4,515,199	+				+0.0
4,515,199	+				+0.9
4,515,199	+				+0.4
4,515,200	-				-1.6
4,515,259	-				+1.0
4,515,267	-				+0.6
4,515,300	-				-0.1