Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3539

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,192,308	+				-0.2
4,192,308	+				-0.3
4,192,309	-				+0.7
4,192,490	+				-0.1
4,192,560	-				-0.9
4,192,566	+				-1.2
4,192,566	+				+0.1
4,192,566	+				-0.3
4,192,567	-				-1.3
4,192,567	-				+0.8
4,192,567	-				+1.8
4,192,570	+				+0.6
4,192,573	+				+0.4
4,192,573	+				-1.6
4,192,574	-				+0.7
4,192,574	-				-1.2
4,192,574	-				+0.1
4,192,574	-				+0.8
4,192,574	-				+1.2
4,192,574	-				-0.5
4,192,579	+				-0.9
4,192,580	-				+2.1
4,192,581	+				-0.4
4,192,582	-				-1.0
4,192,626	+				-2.0
4,192,641	-				-0.2
4,192,652	+				+0.3
4,192,652	+				+0.3
4,192,652	+				+0.1
4,192,653	-				+1.8
4,192,653	-				-2.3
4,192,653	-				+0.8
4,192,653	-				-1.7
4,192,653	-				+0.3
4,192,660	+				+0.1
4,192,660	+				-1.3
4,192,661	-				-0.7
4,192,661	-				+0.0
4,192,676	+				+0.7
4,192,702	+				-0.4
4,192,702	+				-0.3
4,192,709	-				-0.2
4,192,709	-				-0.7
4,192,734	+		Echvi_3538	0.12	-0.0
4,192,735	-		Echvi_3538	0.12	-0.3
4,192,775	-		Echvi_3538	0.22	-0.2
4,192,832	-		Echvi_3538	0.34	-0.3
4,192,910	+		Echvi_3538	0.52	+1.1
4,192,916	-		Echvi_3538	0.54	-1.8
4,192,916	-		Echvi_3538	0.54	-0.5
4,192,952	+		Echvi_3538	0.62	-0.6
4,192,952	+		Echvi_3538	0.62	+0.1
4,192,952	+		Echvi_3538	0.62	+1.8
4,192,953	-		Echvi_3538	0.62	+1.6
4,192,953	-		Echvi_3538	0.62	+0.0
4,192,953	-		Echvi_3538	0.62	+0.6
4,192,962	+		Echvi_3538	0.64	-0.7
4,193,013	-		Echvi_3538	0.76	-1.2
4,193,013	-		Echvi_3538	0.76	-0.7
4,193,013	-		Echvi_3538	0.76	+0.6
4,193,050	+		Echvi_3538	0.84	+1.2
4,193,063	-		Echvi_3538	0.87	-1.3
4,193,119	-				+0.6
4,193,127	+				-0.7
4,193,137	+				+1.2
4,193,137	+				+0.1
4,193,138	-				-1.0
4,193,138	-				-0.4
4,193,138	-				+1.2
4,193,161	-				+1.7
4,193,178	+				-3.0
4,193,178	+				+0.4
4,193,251	+				+0.1
4,193,295	+				-0.5
4,193,296	-				+0.1
4,193,352	+				-0.1
4,193,353	-				-2.1
4,193,353	-				+0.6
4,193,353	-				+0.5
4,193,354	+				-0.8
4,193,387	+				+0.2
4,193,397	+		Echvi_3539	0.11	-0.6
4,193,397	+		Echvi_3539	0.11	+0.7
4,193,398	-		Echvi_3539	0.11	-0.5
4,193,398	-		Echvi_3539	0.11	+0.2
4,193,400	-		Echvi_3539	0.11	+0.4
4,193,400	-		Echvi_3539	0.11	+0.4
4,193,458	-		Echvi_3539	0.18	-0.6
4,193,512	-		Echvi_3539	0.24	-1.8
4,193,512	-		Echvi_3539	0.24	-1.5
4,193,608	-		Echvi_3539	0.35	+0.2
4,193,609	+		Echvi_3539	0.35	-0.9
4,193,610	-		Echvi_3539	0.35	-0.2
4,193,613	+		Echvi_3539	0.35	-0.2
4,193,613	+		Echvi_3539	0.35	+0.4
4,193,613	+		Echvi_3539	0.35	-0.1
4,193,614	-		Echvi_3539	0.36	-0.8
4,193,637	+		Echvi_3539	0.38	-0.6
4,193,670	+		Echvi_3539	0.42	+1.3
4,193,678	-		Echvi_3539	0.43	-0.5
4,193,721	+		Echvi_3539	0.48	+0.6
4,193,721	+		Echvi_3539	0.48	-0.5
4,193,721	+		Echvi_3539	0.48	-0.3
4,193,722	-		Echvi_3539	0.48	+0.1
4,193,725	+		Echvi_3539	0.48	-0.8
4,193,729	+		Echvi_3539	0.49	+0.6
4,193,730	-		Echvi_3539	0.49	+0.3
4,193,778	+		Echvi_3539	0.54	-0.2
4,193,828	+		Echvi_3539	0.60	-0.9
4,193,829	-		Echvi_3539	0.60	-0.6
4,193,894	-		Echvi_3539	0.67	-0.2
4,193,943	+		Echvi_3539	0.73	-0.7
4,193,943	+		Echvi_3539	0.73	-1.0
4,193,946	-		Echvi_3539	0.73	-0.1
4,193,946	-		Echvi_3539	0.73	-0.6
4,193,948	+		Echvi_3539	0.73	-1.1
4,193,978	-		Echvi_3539	0.77	-1.4
4,194,051	+		Echvi_3539	0.85	+0.4
4,194,058	+		Echvi_3539	0.86	-1.6
4,194,089	+		Echvi_3539	0.89	+0.3
4,194,089	+		Echvi_3539	0.89	-0.3
4,194,104	+				-0.9
4,194,105	-				+1.0
4,194,110	+				-1.0
4,194,165	+				-0.5
4,194,184	-				+2.8
4,194,224	-				+2.1
4,194,287	+				+0.0
4,194,287	+				-0.6
4,194,288	-				+0.8
4,194,290	+				-0.3
4,194,291	-				+0.3
4,194,479	+				-0.8
4,194,601	-				-1.4
4,194,635	+				+1.8
4,194,635	+				-0.8
4,194,636	-				-1.5
4,194,636	-				+0.5
4,194,744	+				-0.2
4,194,765	+				-0.4
4,194,801	-				+0.1
4,194,878	+				+1.8
4,194,879	-				-2.6
4,194,879	-				+1.0
4,194,918	+				+1.1
4,194,918	+				+0.6
4,194,939	-				+0.5
4,194,984	-				+1.4
4,195,038	+				+0.2
4,195,038	+				+1.1
4,195,039	-				+0.9
4,195,039	-				+0.8
4,195,103	+		Echvi_3540	0.11	-1.8
4,195,103	+		Echvi_3540	0.11	+1.0
4,195,103	+		Echvi_3540	0.11	+0.3
4,195,103	+		Echvi_3540	0.11	+0.2
4,195,103	+		Echvi_3540	0.11	-2.5
4,195,103	+		Echvi_3540	0.11	-0.1
4,195,103	+		Echvi_3540	0.11	-0.5
4,195,103	+		Echvi_3540	0.11	+0.5
4,195,104	-		Echvi_3540	0.11	+0.2
4,195,104	-		Echvi_3540	0.11	-0.0
4,195,104	-		Echvi_3540	0.11	-0.1
4,195,104	-		Echvi_3540	0.11	+1.8
4,195,104	-		Echvi_3540	0.11	-0.1
4,195,104	-		Echvi_3540	0.11	-1.2
4,195,105	+		Echvi_3540	0.11	+0.7
4,195,105	+		Echvi_3540	0.11	+0.6
4,195,105	+		Echvi_3540	0.11	+2.5
4,195,106	-		Echvi_3540	0.11	-1.2
4,195,106	-		Echvi_3540	0.11	+1.8
4,195,106	-		Echvi_3540	0.11	+0.2
4,195,107	+		Echvi_3540	0.11	+0.1
4,195,107	+		Echvi_3540	0.11	+0.1
4,195,107	+		Echvi_3540	0.11	-1.9
4,195,128	+		Echvi_3540	0.12	+0.8