Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3455

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,085,791	-				+1.3
4,085,791	-				+0.8
4,085,828	-				+0.1
4,085,877	+				+0.4
4,085,895	+				-0.4
4,085,895	+				-0.3
4,085,895	+				+0.7
4,085,895	+				-0.1
4,085,895	+				-0.5
4,085,896	-				+0.0
4,085,898	+				+0.4
4,085,900	+				-0.4
4,085,900	+				-0.3
4,085,901	-				-0.1
4,085,908	-				-1.0
4,085,972	+				-0.5
4,086,014	+				+0.5
4,086,015	-				-0.6
4,086,015	-				-0.7
4,086,045	-				+0.2
4,086,063	-				-1.8
4,086,063	-				+0.2
4,086,131	+				+0.4
4,086,131	+				+0.1
4,086,131	+				+0.8
4,086,131	+				+1.1
4,086,172	+				-0.5
4,086,197	-				+0.5
4,086,197	-				+1.8
4,086,197	-				+1.4
4,086,197	-				-2.4
4,086,236	-		Echvi_3455	0.10	-0.8
4,086,240	+		Echvi_3455	0.11	-0.2
4,086,241	-		Echvi_3455	0.11	+0.7
4,086,241	-		Echvi_3455	0.11	-1.5
4,086,243	-		Echvi_3455	0.11	-1.8
4,086,294	+		Echvi_3455	0.14	+0.1
4,086,341	+		Echvi_3455	0.16	-1.3
4,086,419	+		Echvi_3455	0.21	-0.7
4,086,419	+		Echvi_3455	0.21	-1.5
4,086,419	+		Echvi_3455	0.21	-1.4
4,086,439	+		Echvi_3455	0.22	-1.7
4,086,446	+		Echvi_3455	0.22	-0.9
4,086,446	+		Echvi_3455	0.22	+0.8
4,086,481	+		Echvi_3455	0.24	-0.8
4,086,482	-		Echvi_3455	0.24	-0.1
4,086,488	+		Echvi_3455	0.24	-0.8
4,086,488	+		Echvi_3455	0.24	+0.1
4,086,489	-		Echvi_3455	0.24	+0.5
4,086,638	-		Echvi_3455	0.33	-0.0
4,086,746	-		Echvi_3455	0.38	-0.0
4,086,755	+		Echvi_3455	0.39	-1.2
4,086,756	-		Echvi_3455	0.39	+0.7
4,086,905	+		Echvi_3455	0.47	+0.8
4,086,906	-		Echvi_3455	0.47	+1.4
4,086,906	-		Echvi_3455	0.47	-2.3
4,086,929	-		Echvi_3455	0.48	-0.2
4,086,929	-		Echvi_3455	0.48	-0.2
4,087,056	+		Echvi_3455	0.55	-0.6
4,087,057	-		Echvi_3455	0.55	-1.4
4,087,057	-		Echvi_3455	0.55	-0.2
4,087,210	+		Echvi_3455	0.64	-1.0
4,087,211	-		Echvi_3455	0.64	-1.7
4,087,211	-		Echvi_3455	0.64	-1.3
4,087,211	-		Echvi_3455	0.64	+0.5
4,087,220	+		Echvi_3455	0.64	+1.1
4,087,329	-		Echvi_3455	0.70	-0.2
4,087,356	-		Echvi_3455	0.72	-0.3
4,087,396	-		Echvi_3455	0.74	-0.5
4,087,506	-		Echvi_3455	0.80	-0.3
4,087,575	-		Echvi_3455	0.84	-0.1
4,087,601	-		Echvi_3455	0.85	-1.7
4,087,601	-		Echvi_3455	0.85	+0.8
4,087,621	+		Echvi_3455	0.86	+0.8
4,087,622	-		Echvi_3455	0.86	-1.9
4,087,625	+		Echvi_3455	0.87	+1.0
4,087,625	+		Echvi_3455	0.87	-0.0
4,087,626	-		Echvi_3455	0.87	-0.1
4,087,626	-		Echvi_3455	0.87	-0.1
4,087,626	-		Echvi_3455	0.87	-1.6
4,087,752	+				-0.0
4,087,755	+				+1.8
4,087,755	+				+0.1
4,087,756	-				+0.9
4,087,756	-				-0.4
4,087,756	-				+0.5
4,087,832	+				-0.5
4,087,833	-				+0.8
4,087,867	-				+1.5
4,087,907	-				+0.2
4,087,920	-				-1.4
4,087,939	-				+2.2
4,087,939	-				+0.9
4,087,939	-				-0.9
4,087,985	+		Echvi_3456	0.24	-0.2
4,087,985	+		Echvi_3456	0.24	-1.7
4,087,986	-		Echvi_3456	0.24	+1.0
4,088,047	-		Echvi_3456	0.54	-0.8
4,088,077	-		Echvi_3456	0.69	+1.1
4,088,093	-		Echvi_3456	0.76	+1.3
4,088,135	-				-1.4
4,088,155	+				+0.2
4,088,155	+				+0.1
4,088,155	+				-0.4
4,088,275	+		Echvi_3457	0.33	+1.8
4,088,302	+		Echvi_3457	0.44	-0.6
4,088,370	-		Echvi_3457	0.71	+0.5
4,088,399	-		Echvi_3457	0.83	-1.4
4,088,448	-				-1.5
4,088,467	+				-0.4
4,088,468	-				-0.8
4,088,468	-				-0.8
4,088,468	-				-0.1
4,088,470	-				+0.9
4,088,470	-				+1.1
4,088,470	-				-0.2
4,088,484	-				+0.4
4,088,499	-				+1.3
4,088,612	+				+1.0
4,088,612	+				+1.5
4,088,612	+				+0.2
4,088,612	+				+0.5
4,088,612	+				+1.4
4,088,613	-				-0.5
4,088,613	-				+0.8
4,088,613	-				+0.3
4,088,619	+				+0.9
4,088,619	+				-0.1
4,088,619	+				-2.8
4,088,619	+				+0.1
4,088,619	+				+0.8
4,088,620	-				+2.0
4,088,620	-				+1.0
4,088,620	-				+0.1
4,088,620	-				-1.2
4,088,621	+				-0.2
4,088,622	-				+0.9
4,088,651	+				-0.4
4,088,651	+				+0.9
4,088,652	-				-1.4
4,088,678	+				+0.3
4,088,707	+				-1.1
4,088,707	+				-0.5
4,088,712	+				+0.2
4,088,712	+				+0.7
4,088,713	-				-0.6
4,088,716	+				+1.5
4,088,716	+				-0.3
4,088,716	+				-0.8
4,088,716	+				-0.3
4,088,717	-				-1.0
4,088,725	+				+0.1
4,088,726	-				-0.2
4,088,738	+				-0.1
4,088,785	+		Echvi_3458	0.19	+0.2
4,088,786	-		Echvi_3458	0.19	+1.5
4,088,786	-		Echvi_3458	0.19	+0.2
4,088,787	+		Echvi_3458	0.19	+0.3
4,088,788	-		Echvi_3458	0.19	-0.5
4,088,788	-		Echvi_3458	0.19	-0.5
4,088,841	+		Echvi_3458	0.33	+0.6
4,088,841	+		Echvi_3458	0.33	+0.5
4,088,841	+		Echvi_3458	0.33	-1.0