Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3390

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
3,998,991	+		Echvi_3389	0.86	-1.3
3,998,992	-		Echvi_3389	0.86	-1.6
3,998,992	-		Echvi_3389	0.86	-0.2
3,999,095	+				+2.8
3,999,100	+				-1.2
3,999,101	-				-1.7
3,999,131	+				-3.2
3,999,134	-				+2.4
3,999,205	+				-1.5
3,999,205	+				-2.2
3,999,206	-				+0.2
3,999,206	-				+0.8
3,999,351	-				-0.2
3,999,385	-				-0.7
3,999,438	-				-1.1
3,999,461	+				-1.1
3,999,485	-				-0.2
3,999,591	+				-2.0
3,999,635	+				-1.4
3,999,692	-				+0.1
3,999,692	-				-2.0
3,999,696	-				+0.5
3,999,696	-				-0.7
3,999,779	-				+0.7
3,999,779	-				+1.1
3,999,790	+				-0.8
3,999,818	-				-1.3
3,999,846	-				-0.3
3,999,911	+				-1.8
3,999,978	-				-0.2
3,999,982	-				-0.3
4,000,016	+				-0.7
4,000,025	-				+0.2
4,000,025	-				+0.6
4,000,025	-				+0.4
4,000,041	+				-0.8
4,000,041	+				-1.1
4,000,041	+				+1.1
4,000,042	-				-0.4
4,000,042	-				+1.0
4,000,062	-				-0.1
4,000,150	+				-0.7
4,000,150	+				+0.2
4,000,234	+		Echvi_3390	0.12	-1.9
4,000,234	+		Echvi_3390	0.12	+0.8
4,000,235	-		Echvi_3390	0.12	+0.7
4,000,235	-		Echvi_3390	0.12	+0.3
4,000,239	-		Echvi_3390	0.13	-0.7
4,000,245	-		Echvi_3390	0.13	-0.9
4,000,270	+		Echvi_3390	0.14	+1.4
4,000,271	-		Echvi_3390	0.14	+0.5
4,000,290	+		Echvi_3390	0.15	+0.2
4,000,317	-				+1.8
4,000,320	+		Echvi_3390	0.16	-1.4
4,000,320	+		Echvi_3390	0.16	-0.4
4,000,321	-		Echvi_3390	0.16	-0.9
4,000,321	-		Echvi_3390	0.16	-1.6
4,000,321	-		Echvi_3390	0.16	-2.1
4,000,321	-		Echvi_3390	0.16	-0.0
4,000,321	-		Echvi_3390	0.16	-0.5
4,000,321	-		Echvi_3390	0.16	-0.2
4,000,323	-		Echvi_3390	0.16	+0.1
4,000,323	-		Echvi_3390	0.16	-1.0
4,000,423	+		Echvi_3390	0.21	+0.1
4,000,534	-		Echvi_3390	0.26	+1.8
4,000,583	+		Echvi_3390	0.28	-1.1
4,000,596	+		Echvi_3390	0.29	+0.2
4,000,596	+		Echvi_3390	0.29	+0.2
4,000,597	-		Echvi_3390	0.29	-2.0
4,000,620	+		Echvi_3390	0.30	-1.2
4,000,621	-		Echvi_3390	0.30	-0.1
4,000,626	+		Echvi_3390	0.30	-0.9
4,000,626	+		Echvi_3390	0.30	-1.7
4,000,626	+		Echvi_3390	0.30	-1.7
4,000,626	+		Echvi_3390	0.30	+1.0
4,000,626	+		Echvi_3390	0.30	-1.9
4,000,626	+		Echvi_3390	0.30	-0.1
4,000,626	+		Echvi_3390	0.30	-1.0
4,000,627	-		Echvi_3390	0.30	-1.1
4,000,627	-		Echvi_3390	0.30	+0.5
4,000,627	-		Echvi_3390	0.30	+0.1
4,000,664	-		Echvi_3390	0.32	-2.0
4,000,664	-		Echvi_3390	0.32	-1.4
4,000,665	+		Echvi_3390	0.32	-2.2
4,000,666	-		Echvi_3390	0.32	-1.2
4,000,667	+		Echvi_3390	0.32	+1.4
4,000,667	+		Echvi_3390	0.32	+0.7
4,000,667	+		Echvi_3390	0.32	-1.0
4,000,667	+		Echvi_3390	0.32	+0.2
4,000,668	-		Echvi_3390	0.32	+0.4
4,000,668	-		Echvi_3390	0.32	-1.2
4,000,713	+		Echvi_3390	0.34	+0.7
4,000,754	+		Echvi_3390	0.36	-0.0
4,000,785	+		Echvi_3390	0.37	+0.6
4,000,786	-		Echvi_3390	0.37	+1.1
4,000,789	+		Echvi_3390	0.38	+0.2
4,000,790	-		Echvi_3390	0.38	+0.3
4,000,833	+		Echvi_3390	0.40	+1.2
4,000,833	+		Echvi_3390	0.40	+1.0
4,000,833	+		Echvi_3390	0.40	-1.7
4,000,834	-		Echvi_3390	0.40	-1.3
4,000,834	-		Echvi_3390	0.40	+0.1
4,000,834	-		Echvi_3390	0.40	-0.5
4,000,834	-		Echvi_3390	0.40	+1.3
4,000,835	+		Echvi_3390	0.40	+1.0
4,000,836	-		Echvi_3390	0.40	-0.4
4,000,860	+		Echvi_3390	0.41	+0.1
4,000,865	+		Echvi_3390	0.41	+0.1
4,000,913	+		Echvi_3390	0.43	-1.4
4,000,944	+		Echvi_3390	0.45	+0.1
4,000,959	+		Echvi_3390	0.45	-1.4
4,001,113	+		Echvi_3390	0.52	-0.0
4,001,114	-		Echvi_3390	0.52	-1.9
4,001,134	+		Echvi_3390	0.53	+1.2
4,001,134	+		Echvi_3390	0.53	+0.1
4,001,135	-		Echvi_3390	0.53	+1.0
4,001,135	-		Echvi_3390	0.53	-1.4
4,001,145	+		Echvi_3390	0.54	+0.1
4,001,149	-		Echvi_3390	0.54	-0.4
4,001,149	-		Echvi_3390	0.54	+0.8
4,001,156	-		Echvi_3390	0.54	-0.1
4,001,220	+		Echvi_3390	0.57	-0.8
4,001,221	-		Echvi_3390	0.57	-0.1
4,001,226	-		Echvi_3390	0.58	+0.5
4,001,227	+		Echvi_3390	0.58	-0.7
4,001,334	+		Echvi_3390	0.62	+0.1
4,001,366	+		Echvi_3390	0.64	-0.5
4,001,367	-		Echvi_3390	0.64	+1.3
4,001,395	+		Echvi_3390	0.65	+1.2
4,001,395	+		Echvi_3390	0.65	-0.5
4,001,396	-		Echvi_3390	0.65	+0.3
4,001,474	-		Echvi_3390	0.69	+1.5
4,001,536	-		Echvi_3390	0.72	+2.2
4,001,536	-		Echvi_3390	0.72	-1.2
4,001,541	+		Echvi_3390	0.72	-0.2
4,001,573	+		Echvi_3390	0.73	-0.4
4,001,578	-		Echvi_3390	0.74	-1.9
4,001,579	+		Echvi_3390	0.74	+1.8
4,001,580	-		Echvi_3390	0.74	+0.1
4,001,640	+		Echvi_3390	0.76	-0.6
4,001,641	-		Echvi_3390	0.76	-1.5
4,001,681	+		Echvi_3390	0.78	+0.8
4,001,685	+		Echvi_3390	0.78	-0.1
4,001,685	+		Echvi_3390	0.78	-1.2
4,001,685	+		Echvi_3390	0.78	+1.2
4,001,691	-		Echvi_3390	0.79	+0.2
4,001,692	+		Echvi_3390	0.79	-1.1
4,001,692	+		Echvi_3390	0.79	-1.4
4,001,770	+		Echvi_3390	0.82	-0.6
4,001,771	-		Echvi_3390	0.82	-0.5
4,001,811	+		Echvi_3390	0.84	-1.8
4,001,811	+		Echvi_3390	0.84	-0.2
4,001,812	-		Echvi_3390	0.84	-1.1
4,001,812	-		Echvi_3390	0.84	+1.8
4,001,812	-		Echvi_3390	0.84	+0.1
4,001,812	-		Echvi_3390	0.84	-0.4
4,001,812	-		Echvi_3390	0.84	-1.5
4,001,867	+		Echvi_3390	0.87	+0.8
4,001,868	-		Echvi_3390	0.87	-1.1
4,001,933	+		Echvi_3390	0.90	-0.2
4,001,934	-		Echvi_3390	0.90	-0.4
4,001,934	-		Echvi_3390	0.90	-1.5
4,001,947	-				-0.5
4,002,046	+				-0.5
4,002,053	-				-0.9
4,002,106	-				-0.2
4,002,189	+				-0.0
4,002,189	+				-3.2
4,002,190	-				-1.4
4,002,190	-				-0.1
4,002,190	-				+0.2
4,002,191	+				-1.5
4,002,191	+				-2.2
4,002,197	+				+0.7
4,002,197	+				-0.6
4,002,197	+				+1.0
4,002,197	+				+0.2
4,002,278	-				-0.2
4,002,347	-				-1.0
4,002,347	-				-1.4
4,002,426	+				-1.0
4,002,426	+				+1.1
4,002,427	-				+1.3
4,002,427	-				-1.9
4,002,480	-				-0.4
4,002,480	-				+0.5
4,002,480	-				+0.4
4,002,480	-				-0.5
4,002,482	+				+2.1
4,002,482	+				-1.2
4,002,483	-				-0.8
4,002,524	-		Echvi_3391	0.11	-1.3
4,002,674	+		Echvi_3391	0.15	+1.4
4,002,782	+		Echvi_3391	0.19	+1.4
4,002,875	-		Echvi_3391	0.21	+0.1
4,002,875	-		Echvi_3391	0.21	-1.2
4,003,019	+		Echvi_3391	0.26	+1.3
4,003,048	-		Echvi_3391	0.27	+0.7
4,003,098	+		Echvi_3391	0.28	-0.8
4,003,116	+		Echvi_3391	0.29	-3.0