Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3108

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
3,715,603	+		Echvi_3107	0.60	+0.3
3,715,603	+		Echvi_3107	0.60	+1.2
3,715,720	-		Echvi_3107	0.72	+0.3
3,715,743	-		Echvi_3107	0.75	+0.1
3,715,841	-		Echvi_3107	0.85	-0.6
3,715,841	-		Echvi_3107	0.85	+0.8
3,715,845	+		Echvi_3107	0.86	-0.3
3,715,958	+				-1.2
3,716,001	-				-0.4
3,716,155	-				-0.5
3,716,159	-				-0.3
3,716,163	-				-0.3
3,716,200	+				+0.6
3,716,200	+				+1.5
3,716,212	+				-0.1
3,716,212	+				+1.0
3,716,219	+				-0.7
3,716,219	+				+2.1
3,716,220	-				-0.4
3,716,241	+				-0.1
3,716,352	+				+1.1
3,716,354	+				+1.3
3,716,355	-				+0.5
3,716,355	-				-1.5
3,716,391	+				+1.4
3,716,399	+				+1.4
3,716,408	-				-2.8
3,716,409	+				+1.9
3,716,410	-				+0.4
3,716,429	+				+2.7
3,716,430	-				+1.6
3,716,430	-				+0.1
3,716,430	-				-0.4
3,716,487	+				+1.5
3,716,499	-				+0.7
3,716,505	-				+0.2
3,716,539	+				-0.7
3,716,540	-				+0.5
3,716,603	-				+0.0
3,716,604	+				-0.5
3,716,605	-				-0.7
3,716,621	+		Echvi_3108	0.11	+1.0
3,716,621	+		Echvi_3108	0.11	+0.2
3,716,621	+		Echvi_3108	0.11	+1.2
3,716,621	+		Echvi_3108	0.11	-0.7
3,716,622	-		Echvi_3108	0.11	-0.7
3,716,624	-		Echvi_3108	0.12	-0.2
3,716,630	-		Echvi_3108	0.12	+0.1
3,716,632	-		Echvi_3108	0.12	+0.2
3,716,632	-		Echvi_3108	0.12	+0.7
3,716,785	+		Echvi_3108	0.28	+3.9
3,716,819	+		Echvi_3108	0.32	-0.6
3,716,819	+		Echvi_3108	0.32	-0.7
3,716,820	-		Echvi_3108	0.32	+0.3
3,716,859	+		Echvi_3108	0.36	+0.2
3,716,859	+		Echvi_3108	0.36	-0.6
3,716,859	+		Echvi_3108	0.36	+0.5
3,716,859	+		Echvi_3108	0.36	+1.2
3,716,859	+		Echvi_3108	0.36	+1.5
3,716,859	+		Echvi_3108	0.36	+1.1
3,716,859	+		Echvi_3108	0.36	+1.0
3,716,860	-		Echvi_3108	0.36	+0.6
3,716,860	-		Echvi_3108	0.36	+2.2
3,716,860	-		Echvi_3108	0.36	-0.5
3,716,860	-		Echvi_3108	0.36	+0.1
3,716,860	-		Echvi_3108	0.36	+0.6
3,716,860	-		Echvi_3108	0.36	-2.6
3,716,860	-		Echvi_3108	0.36	+0.3
3,716,861	+		Echvi_3108	0.36	+0.2
3,716,861	+		Echvi_3108	0.36	+1.1
3,716,861	+		Echvi_3108	0.36	+1.2
3,716,861	+		Echvi_3108	0.36	+1.2
3,716,862	-		Echvi_3108	0.36	+0.9
3,716,862	-		Echvi_3108	0.36	+0.4
3,716,862	-		Echvi_3108	0.36	+0.0
3,716,882	-		Echvi_3108	0.38	-0.3
3,716,942	-		Echvi_3108	0.45	+0.7
3,716,958	+		Echvi_3108	0.46	+1.6
3,716,959	-		Echvi_3108	0.46	+0.5
3,716,973	+		Echvi_3108	0.48	+1.3
3,716,988	-		Echvi_3108	0.49	-0.2
3,716,988	-		Echvi_3108	0.49	-2.4
3,716,988	-		Echvi_3108	0.49	-0.3
3,717,025	+		Echvi_3108	0.53	+1.9
3,717,026	-		Echvi_3108	0.53	-0.1
3,717,026	-		Echvi_3108	0.53	+0.7
3,717,026	-		Echvi_3108	0.53	+0.2
3,717,027	+		Echvi_3108	0.53	+1.0
3,717,045	-		Echvi_3108	0.55	-0.0
3,717,065	+		Echvi_3108	0.57	-0.3
3,717,065	+		Echvi_3108	0.57	+0.5
3,717,065	+		Echvi_3108	0.57	+1.5
3,717,065	+		Echvi_3108	0.57	+1.5
3,717,066	-		Echvi_3108	0.57	-0.5
3,717,067	+		Echvi_3108	0.58	+1.6
3,717,067	+		Echvi_3108	0.58	+2.0
3,717,077	+		Echvi_3108	0.59	-0.2
3,717,078	-		Echvi_3108	0.59	-1.1
3,717,152	+		Echvi_3108	0.66	+0.6
3,717,153	-		Echvi_3108	0.66	-0.7
3,717,255	-		Echvi_3108	0.77	+0.9
3,717,272	+		Echvi_3108	0.79	+3.9
3,717,272	+		Echvi_3108	0.79	+1.4
3,717,272	+		Echvi_3108	0.79	-0.5
3,717,273	-		Echvi_3108	0.79	+0.8
3,717,273	-		Echvi_3108	0.79	-0.6
3,717,273	-		Echvi_3108	0.79	-0.3
3,717,273	-		Echvi_3108	0.79	-1.1
3,717,279	-		Echvi_3108	0.80	+0.1
3,717,290	+		Echvi_3108	0.81	+0.9
3,717,291	-		Echvi_3108	0.81	-0.4
3,717,328	+		Echvi_3108	0.85	+0.9
3,717,328	+		Echvi_3108	0.85	-1.0
3,717,328	+		Echvi_3108	0.85	+1.0
3,717,328	+		Echvi_3108	0.85	+1.4
3,717,329	-		Echvi_3108	0.85	+0.9
3,717,478	+				+0.0
3,717,478	+				+1.5
3,717,479	-				-0.8
3,717,518	+				+0.9
3,717,589	+				+0.9
3,717,593	-		Echvi_3109	0.24	-1.7
3,717,604	+		Echvi_3109	0.29	-0.3
3,717,619	-		Echvi_3109	0.36	+0.2
3,717,664	+		Echvi_3109	0.56	-0.3
3,717,710	+		Echvi_3109	0.78	-0.8
3,717,739	+				+1.4
3,717,966	+				-0.1
3,717,966	+				-1.1
3,717,971	+				+0.3
3,717,971	+				-0.5
3,718,003	+				+0.5
3,718,004	-				-0.6
3,718,126	-		Echvi_3110	0.20	+0.2
3,718,138	+		Echvi_3110	0.21	-1.0
3,718,144	+		Echvi_3110	0.22	+1.5
3,718,144	+		Echvi_3110	0.22	+1.9
3,718,148	+		Echvi_3110	0.22	-0.9
3,718,148	+		Echvi_3110	0.22	-0.3
3,718,149	-		Echvi_3110	0.23	-0.1
3,718,149	-		Echvi_3110	0.23	-0.2
3,718,149	-		Echvi_3110	0.23	+0.0
3,718,187	-		Echvi_3110	0.27	-0.2
3,718,223	-		Echvi_3110	0.31	-0.2
3,718,254	-		Echvi_3110	0.35	+1.4
3,718,270	-		Echvi_3110	0.36	-1.7
3,718,295	-		Echvi_3110	0.39	-0.1
3,718,348	+		Echvi_3110	0.45	-2.5
3,718,348	+		Echvi_3110	0.45	-1.3
3,718,360	-		Echvi_3110	0.47	-1.5