Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3096

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
3,699,010	-				-0.2
3,699,012	-				+0.6
3,699,012	-				-0.6
3,699,119	-				-0.4
3,699,197	-				+0.6
3,699,221	+				-1.4
3,699,221	+				-0.9
3,699,221	+				-1.7
3,699,237	+				-0.4
3,699,242	+				+0.0
3,699,264	+				+2.4
3,699,265	-				-1.9
3,699,267	+				+0.1
3,699,268	-				+0.8
3,699,280	-				-0.3
3,699,281	+				-0.7
3,699,312	+				+0.5
3,699,330	+				-0.3
3,699,331	-				+1.2
3,699,335	-				-0.5
3,699,338	+				-0.1
3,699,338	+				+0.4
3,699,338	+				-0.7
3,699,338	+				-0.3
3,699,339	-				+0.0
3,699,339	-				-0.1
3,699,339	-				+0.7
3,699,339	-				-0.2
3,699,339	-				-0.2
3,699,339	-				-0.9
3,699,339	-				-1.7
3,699,342	+				+0.2
3,699,342	+				-0.7
3,699,342	+				-0.4
3,699,342	+				-1.5
3,699,342	+				-0.3
3,699,342	+				-0.6
3,699,342	+				-3.0
3,699,342	+				-0.2
3,699,343	-				+0.2
3,699,343	-				+0.3
3,699,343	-				-1.0
3,699,343	-				+0.4
3,699,343	-				-0.9
3,699,343	-				+0.5
3,699,345	-				+1.4
3,699,345	-				+2.8
3,699,354	-				-0.5
3,699,437	-		Echvi_3096	0.12	+0.3
3,699,532	-		Echvi_3096	0.25	+1.8
3,699,559	-		Echvi_3096	0.29	+0.5
3,699,575	+		Echvi_3096	0.31	+0.3
3,699,576	-		Echvi_3096	0.31	+1.3
3,699,580	-		Echvi_3096	0.31	+0.4
3,699,580	-		Echvi_3096	0.31	+0.0
3,699,582	+		Echvi_3096	0.32	+2.2
3,699,582	+		Echvi_3096	0.32	-1.2
3,699,585	+		Echvi_3096	0.32	+0.3
3,699,586	-		Echvi_3096	0.32	-0.7
3,699,633	+		Echvi_3096	0.38	-0.2
3,699,670	-		Echvi_3096	0.43	-0.5
3,699,690	-		Echvi_3096	0.46	-0.7
3,699,704	+		Echvi_3096	0.48	-1.2
3,699,757	-		Echvi_3096	0.55	+1.6
3,699,757	-		Echvi_3096	0.55	-0.2
3,699,785	+		Echvi_3096	0.59	+0.6
3,699,852	+		Echvi_3096	0.68	+0.8
3,699,853	-		Echvi_3096	0.68	+0.1
3,699,853	-		Echvi_3096	0.68	+1.1
3,699,854	+		Echvi_3096	0.68	-0.4
3,699,854	+		Echvi_3096	0.68	-2.3
3,699,920	+		Echvi_3096	0.77	-2.2
3,699,921	-		Echvi_3096	0.77	+3.3
3,699,921	-		Echvi_3096	0.77	+0.1
3,699,921	-		Echvi_3096	0.77	+1.7
3,699,921	-		Echvi_3096	0.77	+0.3
3,699,953	-		Echvi_3096	0.81	-1.2
3,700,031	-				+1.3
3,700,051	-				+1.0
3,700,059	-				-0.0
3,700,064	-				-1.2
3,700,092	+				-0.2
3,700,098	+				+0.3
3,700,098	+				+0.8
3,700,099	-				+0.1
3,700,102	-				-0.3
3,700,102	-				-0.1
3,700,128	+				-0.6
3,700,128	+				-1.5
3,700,160	-				-0.2
3,700,196	-				+1.3
3,700,198	+				-1.3
3,700,221	+				+0.4
3,700,221	+				+0.8
3,700,229	+				+0.3
3,700,257	+				-1.4
3,700,268	+				+0.3
3,700,268	+				+0.1
3,700,268	+				-0.3
3,700,268	+				+0.4
3,700,269	-				+0.8
3,700,269	-				-0.4
3,700,269	-				-0.6
3,700,269	-				-0.4
3,700,269	-				-0.6
3,700,269	-				-0.3
3,700,269	-				+0.0
3,700,269	-				-0.0
3,700,312	+				-1.6
3,700,320	+				-0.3
3,700,320	+				-0.5
3,700,337	+				+0.8
3,700,337	+				+1.4
3,700,337	+				+0.5
3,700,337	+				+1.1
3,700,337	+				-2.2
3,700,337	+				+0.0
3,700,337	+				+0.8
3,700,338	-				+1.8
3,700,338	-				+0.8
3,700,390	-				-1.0
3,700,390	-				+0.4
3,700,403	+				+2.2
3,700,403	+				+0.6
3,700,403	+				-0.2
3,700,403	+				-0.1
3,700,404	-				+2.3
3,700,404	-				-0.2
3,700,404	-				-0.1
3,700,404	-				+0.7
3,700,404	-				-2.2
3,700,404	-				-0.3
3,700,439	+				-0.7
3,700,440	-				+2.2
3,700,445	+				-1.5
3,700,452	+				-0.1
3,700,452	+				-0.8
3,700,452	+				+0.4
3,700,452	+				-0.7
3,700,453	-				+0.0
3,700,453	-				+0.3
3,700,453	-				-0.8
3,700,453	-				+0.8
3,700,454	+				+1.2
3,700,454	+				-0.4
3,700,454	+				-0.2
3,700,454	+				-0.7
3,700,455	-				+1.3
3,700,455	-				+0.3
3,700,455	-				-0.2
3,700,455	-				-0.6
3,700,455	-				+0.3
3,700,455	-				-0.5
3,700,455	-				+1.1
3,700,456	+				-0.3
3,700,456	+				+1.0
3,700,456	+				+0.7
3,700,457	-				-1.7
3,700,457	-				-0.2
3,700,457	-				-0.2
3,700,457	-				-0.2
3,700,503	+				+0.4
3,700,503	+				-2.3
3,700,504	-				-1.6
3,700,527	+				-2.2
3,700,528	-				-1.4
3,700,528	-				+0.1
3,700,573	-		Echvi_3097	0.17	-1.2
3,700,592	-		Echvi_3097	0.19	-0.4
3,700,610	+		Echvi_3097	0.22	+1.3
3,700,626	+		Echvi_3097	0.24	-0.2
3,700,626	+		Echvi_3097	0.24	-1.2
3,700,627	-		Echvi_3097	0.24	-0.5
3,700,627	-		Echvi_3097	0.24	-0.7
3,700,707	-		Echvi_3097	0.36	-1.6
3,700,754	+		Echvi_3097	0.43	-0.2
3,700,759	-		Echvi_3097	0.44	-1.0
3,700,858	+		Echvi_3097	0.58	+2.4
3,700,859	-		Echvi_3097	0.58	-0.1
3,700,888	-		Echvi_3097	0.63	-0.4
3,700,899	+		Echvi_3097	0.64	-0.7
3,700,900	-		Echvi_3097	0.64	+0.7
3,700,953	+		Echvi_3097	0.72	+0.5
3,700,953	+		Echvi_3097	0.72	+1.1
3,700,954	-		Echvi_3097	0.72	-0.7
3,700,954	-		Echvi_3097	0.72	-0.7
3,700,981	+		Echvi_3097	0.76	-0.2
3,700,997	-		Echvi_3097	0.79	-0.4
3,701,005	-		Echvi_3097	0.80	-1.3
3,701,065	-		Echvi_3097	0.88	-0.2