Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2315

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2314 and Echvi_2315 are separated by 22 nucleotidesEchvi_2315 and Echvi_2316 are separated by 151 nucleotidesEchvi_2316 and Echvi_2317 are separated by 19 nucleotides Echvi_2314: Echvi_2314 - beta-ketoacyl-acyl-carrier-protein synthase II, at 2,749,030 to 2,750,283 _2314 Echvi_2315: Echvi_2315 - acyl carrier protein, at 2,750,306 to 2,750,542 _2315 Echvi_2316: Echvi_2316 - hypothetical protein, at 2,750,694 to 2,751,122 _2316 Echvi_2317: Echvi_2317 - pyruvate kinase, at 2,751,142 to 2,752,578 _2317 Position (kb) 2750 2751Strain fitness (log2 ratio) -1 0 1 2at 2749.317 kb on + strand, within Echvi_2314at 2749.342 kb on + strand, within Echvi_2314at 2749.343 kb on - strand, within Echvi_2314at 2749.372 kb on + strand, within Echvi_2314at 2749.373 kb on - strand, within Echvi_2314at 2749.382 kb on + strand, within Echvi_2314at 2749.383 kb on - strand, within Echvi_2314at 2749.564 kb on - strand, within Echvi_2314at 2749.751 kb on + strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.756 kb on - strand, within Echvi_2314at 2749.756 kb on - strand, within Echvi_2314at 2749.996 kb on + strand, within Echvi_2314at 2749.997 kb on - strand, within Echvi_2314at 2749.997 kb on - strand, within Echvi_2314at 2750.098 kb on - strand, within Echvi_2314at 2750.167 kb on - strandat 2750.587 kb on - strandat 2751.118 kb on - strandat 2751.129 kb on + strandat 2751.132 kb on + strandat 2751.134 kb on + strandat 2751.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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2,749,317 + Echvi_2314 0.23 -0.6
2,749,342 + Echvi_2314 0.25 +0.3
2,749,343 - Echvi_2314 0.25 +0.7
2,749,372 + Echvi_2314 0.27 +1.9
2,749,373 - Echvi_2314 0.27 -0.1
2,749,382 + Echvi_2314 0.28 -0.8
2,749,383 - Echvi_2314 0.28 +2.4
2,749,564 - Echvi_2314 0.43 +0.9
2,749,751 + Echvi_2314 0.57 +0.9
2,749,752 - Echvi_2314 0.58 -1.6
2,749,752 - Echvi_2314 0.58 +0.9
2,749,752 - Echvi_2314 0.58 +0.1
2,749,752 - Echvi_2314 0.58 -0.1
2,749,756 - Echvi_2314 0.58 +0.0
2,749,756 - Echvi_2314 0.58 +1.2
2,749,996 + Echvi_2314 0.77 -0.9
2,749,997 - Echvi_2314 0.77 +0.9
2,749,997 - Echvi_2314 0.77 -0.3
2,750,098 - Echvi_2314 0.85 +0.4
2,750,167 - -0.7
2,750,587 - -0.1
2,751,118 - -1.4
2,751,129 + -0.1
2,751,132 + -0.4
2,751,134 + -1.0
2,751,134 + -0.2

Or see this region's nucleotide sequence