Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1165

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
1,334,319	+		Echvi_1163	0.84	+2.4
1,334,378	+		Echvi_1163	0.88	+2.5
1,334,378	+		Echvi_1163	0.88	+1.0
1,334,379	-		Echvi_1163	0.89	-0.6
1,334,381	+		Echvi_1163	0.89	+1.2
1,334,381	+		Echvi_1163	0.89	-0.7
1,334,433	-				+1.9
1,334,433	-				-1.5
1,334,433	-				-0.7
1,334,472	+				+1.9
1,334,473	-				-0.1
1,334,473	-				-0.7
1,334,485	+				+1.0
1,334,511	+				+1.3
1,334,518	+				+0.7
1,334,530	+				+1.5
1,334,530	+				+1.3
1,334,530	+				+1.7
1,334,531	-				-1.9
1,334,531	-				-0.8
1,334,531	-				-0.8
1,334,531	-				-1.8
1,334,537	-				-0.5
1,334,537	-				-2.4
1,334,540	+				+1.8
1,334,540	+				+0.6
1,334,540	+				+2.4
1,334,541	-				-2.2
1,334,541	-				-1.0
1,334,619	+		Echvi_1164	0.53	+3.9
1,334,672	-				-0.7
1,334,672	-				-2.4
1,334,684	-				-1.3
1,334,687	+				+2.2
1,334,705	+				+3.3
1,334,706	-				-2.5
1,334,746	+				+3.5
1,334,747	-				-0.3
1,334,751	+				+1.7
1,334,755	+				+3.0
1,334,755	+				+3.7
1,334,756	-				-2.9
1,334,786	+				+3.1
1,334,787	-				-0.9
1,334,796	+				+2.9
1,334,797	-				-2.4
1,334,814	+				+1.1
1,334,946	+				+2.9
1,334,946	+				+2.8
1,334,946	+				+2.7
1,334,947	-				-0.6
1,334,947	-				+0.0
1,334,947	-				-1.5
1,334,948	+				+3.7
1,334,949	-				-0.9
1,334,959	+				+3.0
1,334,959	+				+1.3
1,334,961	+				+3.0
1,334,962	-				-1.0
1,334,986	-				-0.5
1,334,986	-				+0.4
1,334,991	+				+4.1
1,334,992	-				+0.6
1,334,992	-				-1.0
1,335,074	+				+1.7
1,335,074	+				+2.6
1,335,074	+				+2.7
1,335,075	-				+0.2
1,335,089	+				+3.2
1,335,090	-				-0.9
1,335,090	-				-2.3
1,335,095	+				+3.3
1,335,095	+				+3.6
1,335,095	+				+2.7
1,335,096	-				-0.7
1,335,107	-				-2.6
1,335,107	-				-0.1
1,335,107	-				-2.3
1,335,139	+				+2.9
1,335,154	-				-0.3
1,335,167	-				-1.9
1,335,167	-				-1.5
1,335,167	-				-0.2
1,335,167	-				+0.9
1,335,175	-				-1.7
1,335,187	-				-1.6
1,335,187	-				-0.4
1,335,187	-				+0.3
1,335,187	-				-0.8
1,335,189	-				-0.4
1,335,189	-				-1.6
1,335,189	-				-0.9
1,335,189	-				-2.8
1,335,189	-				-1.4
1,335,189	-				-2.2
1,335,189	-				-2.5
1,335,189	-				-2.6
1,335,189	-				-1.1
1,335,189	-				-2.9
1,335,189	-				-2.0
1,335,200	-				-0.1
1,335,202	-				-1.8
1,335,202	-				-1.8
1,335,202	-				-2.6
1,335,202	-				-2.5
1,335,220	+				+2.5
1,335,220	+				+3.3
1,335,220	+				+3.1
1,335,220	+				+1.6
1,335,223	-				-3.0
1,335,242	+				+3.9
1,335,324	+				-0.9
1,335,325	-				-4.9
1,335,429	-				-1.7
1,335,429	-				-2.9
1,335,460	-				-1.4
1,335,511	+				+0.3
1,335,538	+		Echvi_1165	0.10	-0.7
1,335,538	+		Echvi_1165	0.10	-2.3
1,335,613	+		Echvi_1165	0.13	-4.4
1,335,614	-		Echvi_1165	0.13	-2.5
1,335,658	+		Echvi_1165	0.15	-2.4
1,335,664	-		Echvi_1165	0.16	-2.4
1,335,761	+		Echvi_1165	0.20	-1.9
1,335,889	-		Echvi_1165	0.26	-3.3
1,335,889	-		Echvi_1165	0.26	-1.7
1,335,912	-		Echvi_1165	0.27	-1.6
1,336,009	+		Echvi_1165	0.31	-2.6
1,336,009	+		Echvi_1165	0.31	-2.7
1,336,010	-		Echvi_1165	0.31	-0.7
1,336,010	-		Echvi_1165	0.31	-2.3
1,336,010	-		Echvi_1165	0.31	-2.0
1,336,010	-		Echvi_1165	0.31	-2.0
1,336,010	-		Echvi_1165	0.31	-1.9
1,336,010	-		Echvi_1165	0.31	-2.5
1,336,010	-		Echvi_1165	0.31	-2.8
1,336,086	+		Echvi_1165	0.35	-2.6
1,336,087	-		Echvi_1165	0.35	-1.8
1,336,212	-		Echvi_1165	0.40	-3.0
1,336,212	-		Echvi_1165	0.40	-2.7
1,336,233	+		Echvi_1165	0.41	-1.3
1,336,263	+		Echvi_1165	0.43	-1.9
1,336,264	-		Echvi_1165	0.43	-1.8
1,336,264	-		Echvi_1165	0.43	-0.8
1,336,343	-		Echvi_1165	0.46	-1.8
1,336,359	+		Echvi_1165	0.47	-1.8
1,336,470	-		Echvi_1165	0.52	-2.3
1,336,470	-		Echvi_1165	0.52	-1.8
1,336,516	+		Echvi_1165	0.54	-1.1
1,336,517	-		Echvi_1165	0.54	-1.3
1,336,517	-		Echvi_1165	0.54	-2.6
1,336,561	+		Echvi_1165	0.56	+0.6
1,336,561	+		Echvi_1165	0.56	-0.8
1,336,561	+		Echvi_1165	0.56	-3.7
1,336,561	+		Echvi_1165	0.56	-4.4
1,336,562	-		Echvi_1165	0.56	-2.2
1,336,671	-		Echvi_1165	0.61	-0.9
1,336,671	-		Echvi_1165	0.61	-1.1
1,336,673	+		Echvi_1165	0.61	-0.9
1,336,673	+		Echvi_1165	0.61	+1.1
1,336,674	-		Echvi_1165	0.61	-0.7
1,336,688	+		Echvi_1165	0.62	-2.5
1,336,688	+		Echvi_1165	0.62	-2.4
1,336,689	-		Echvi_1165	0.62	-0.1
1,336,689	-		Echvi_1165	0.62	+0.0
1,336,892	+		Echvi_1165	0.71	-2.5
1,336,948	-		Echvi_1165	0.73	-2.7
1,337,007	+		Echvi_1165	0.76	-3.3
1,337,008	-		Echvi_1165	0.76	-2.2
1,337,011	-		Echvi_1165	0.76	-4.0
1,337,022	+		Echvi_1165	0.76	-1.3
1,337,023	-		Echvi_1165	0.77	-2.9
1,337,043	+		Echvi_1165	0.77	-3.1
1,337,043	+		Echvi_1165	0.77	-1.3
1,337,044	-		Echvi_1165	0.77	-3.8
1,337,127	+		Echvi_1165	0.81	-2.7
1,337,127	+		Echvi_1165	0.81	-3.9
1,337,128	-		Echvi_1165	0.81	+0.9
1,337,233	+		Echvi_1165	0.86	-3.1
1,337,234	-		Echvi_1165	0.86	-4.2
1,337,255	+		Echvi_1165	0.87	-1.7
1,337,256	-		Echvi_1165	0.87	-2.0
1,337,260	-		Echvi_1165	0.87	-2.6
1,337,265	+		Echvi_1165	0.87	-1.1
1,337,265	+		Echvi_1165	0.87	-2.8
1,337,266	-		Echvi_1165	0.87	-1.9
1,337,266	-		Echvi_1165	0.87	-3.3
1,337,266	-		Echvi_1165	0.87	-1.8
1,337,534	-				-0.7
1,337,545	+				-2.1
1,337,546	-				-1.0
1,337,566	+				-0.9
1,337,566	+				-1.7
1,337,566	+				-2.5
1,337,567	-				-2.3
1,337,567	-				-3.1
1,337,567	-				-1.7
1,337,624	-				-3.1
1,337,684	+				+0.1
1,337,764	+				-0.4
1,337,765	-				+1.3
1,337,779	+				+1.6
1,337,784	+				-1.5
1,337,785	-				-0.2
1,337,789	+				-2.3
1,337,797	-				-0.9
1,337,797	-				-2.2
1,337,802	-				-0.8
1,337,809	+				+0.7
1,337,809	+				-2.7
1,337,809	+				+0.3
1,337,810	-				-2.7
1,337,810	-				+0.2
1,337,810	-				-2.4
1,337,810	-				-0.7
1,337,810	-				+0.0
1,337,814	+				-0.6
1,337,827	+				+0.6
1,337,828	-				-1.1
1,337,831	+				-3.9
1,337,831	+				-1.0
1,337,879	+				-2.1
1,337,903	-				+0.9
1,337,924	+				-1.1
1,337,924	+				-1.3
1,337,953	+				+1.3
1,337,989	-				-0.1
1,337,989	-				-0.2
1,337,991	-				-0.1
1,337,991	-				-0.9
1,338,041	+		Echvi_1166	0.12	-2.1
1,338,051	+		Echvi_1166	0.13	-2.2
1,338,052	-		Echvi_1166	0.13	-1.7
1,338,052	-		Echvi_1166	0.13	+0.9
1,338,052	-		Echvi_1166	0.13	+1.4
1,338,053	+		Echvi_1166	0.13	-1.2
1,338,054	-		Echvi_1166	0.13	-0.8
1,338,171	-		Echvi_1166	0.20	-2.4
1,338,171	-		Echvi_1166	0.20	+3.2
1,338,216	-		Echvi_1166	0.23	+0.3
1,338,216	-		Echvi_1166	0.23	-0.6
1,338,275	+		Echvi_1166	0.26	-1.2
1,338,275	+		Echvi_1166	0.26	-1.4
1,338,276	-		Echvi_1166	0.27	+0.1
1,338,276	-		Echvi_1166	0.27	-0.6
1,338,276	-		Echvi_1166	0.27	+0.2
1,338,391	+		Echvi_1166	0.33	+0.1
1,338,391	+		Echvi_1166	0.33	-0.7
1,338,486	+		Echvi_1166	0.39	-1.0
1,338,520	-		Echvi_1166	0.41	-0.9
1,338,546	+		Echvi_1166	0.43	-0.3
1,338,546	+		Echvi_1166	0.43	+2.5
1,338,546	+		Echvi_1166	0.43	+0.1
1,338,546	+		Echvi_1166	0.43	-0.0
1,338,546	+		Echvi_1166	0.43	-0.2
1,338,546	+		Echvi_1166	0.43	-2.3
1,338,547	-		Echvi_1166	0.43	-0.6
1,338,547	-		Echvi_1166	0.43	-0.3
1,338,547	-		Echvi_1166	0.43	+0.3
1,338,547	-		Echvi_1166	0.43	-1.8
1,338,547	-		Echvi_1166	0.43	-1.6