Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1163

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
1,332,225	-		Echvi_1162	0.69	-1.3
1,332,278	-		Echvi_1162	0.72	-1.3
1,332,323	-		Echvi_1162	0.74	-0.3
1,332,333	+		Echvi_1162	0.74	+0.6
1,332,333	+		Echvi_1162	0.74	-0.4
1,332,334	-		Echvi_1162	0.74	+0.3
1,332,334	-		Echvi_1162	0.74	-1.3
1,332,334	-		Echvi_1162	0.74	-2.0
1,332,343	+		Echvi_1162	0.75	+0.5
1,332,543	-		Echvi_1162	0.84	-1.3
1,332,543	-		Echvi_1162	0.84	-2.1
1,332,548	-		Echvi_1162	0.85	-1.5
1,332,559	+		Echvi_1162	0.85	+0.5
1,332,559	+		Echvi_1162	0.85	+0.0
1,332,560	-		Echvi_1162	0.85	-2.2
1,332,560	-		Echvi_1162	0.85	-1.0
1,332,560	-		Echvi_1162	0.85	-3.1
1,332,564	-		Echvi_1162	0.85	-0.1
1,332,771	+				+1.7
1,332,772	-				-0.3
1,332,772	-				-2.6
1,332,813	+				+1.4
1,332,865	-				-2.6
1,332,884	+				-0.2
1,332,960	-				+0.6
1,332,969	+				+1.8
1,332,970	-				-1.8
1,332,970	-				-2.0
1,333,100	+				+0.9
1,333,158	+				+0.4
1,333,159	-				-0.2
1,333,240	-				+0.5
1,333,282	+		Echvi_1163	0.12	+0.9
1,333,283	-		Echvi_1163	0.12	+1.3
1,333,322	-		Echvi_1163	0.14	-3.3
1,333,378	+		Echvi_1163	0.18	+0.7
1,333,428	+		Echvi_1163	0.22	+1.1
1,333,429	-		Echvi_1163	0.22	-0.0
1,333,440	+		Echvi_1163	0.23	+0.9
1,333,479	-		Echvi_1163	0.25	+0.3
1,333,479	-		Echvi_1163	0.25	-0.1
1,333,479	-		Echvi_1163	0.25	-3.1
1,333,479	-		Echvi_1163	0.25	-2.4
1,333,479	-		Echvi_1163	0.25	+0.4
1,333,481	+		Echvi_1163	0.26	+0.6
1,333,481	+		Echvi_1163	0.26	+0.1
1,333,481	+		Echvi_1163	0.26	+0.4
1,333,482	-		Echvi_1163	0.26	-0.9
1,333,482	-		Echvi_1163	0.26	-1.3
1,333,482	-		Echvi_1163	0.26	-1.0
1,333,482	-		Echvi_1163	0.26	-0.9
1,333,482	-		Echvi_1163	0.26	-3.1
1,333,530	+		Echvi_1163	0.29	-0.7
1,333,548	+		Echvi_1163	0.30	+0.4
1,333,549	-		Echvi_1163	0.30	-0.9
1,333,549	-		Echvi_1163	0.30	-2.4
1,333,549	-		Echvi_1163	0.30	-0.3
1,333,685	-		Echvi_1163	0.40	-2.2
1,333,690	+		Echvi_1163	0.40	+3.6
1,333,708	+		Echvi_1163	0.42	-0.1
1,333,708	+		Echvi_1163	0.42	+1.5
1,333,708	+		Echvi_1163	0.42	+0.8
1,333,754	+		Echvi_1163	0.45	+1.9
1,333,754	+		Echvi_1163	0.45	+0.6
1,333,754	+		Echvi_1163	0.45	+0.1
1,333,754	+		Echvi_1163	0.45	+0.5
1,333,754	+		Echvi_1163	0.45	+1.6
1,333,755	-		Echvi_1163	0.45	-0.1
1,333,755	-		Echvi_1163	0.45	-1.1
1,333,755	-		Echvi_1163	0.45	-0.0
1,333,789	+		Echvi_1163	0.47	+0.7
1,333,819	+		Echvi_1163	0.49	+3.5
1,333,819	+		Echvi_1163	0.49	+1.2
1,333,819	+		Echvi_1163	0.49	+2.0
1,333,819	+		Echvi_1163	0.49	+1.0
1,333,820	-		Echvi_1163	0.49	+0.0
1,333,820	-		Echvi_1163	0.49	-1.5
1,333,823	+		Echvi_1163	0.50	+4.7
1,333,823	+		Echvi_1163	0.50	+1.3
1,333,823	+		Echvi_1163	0.50	+0.9
1,333,823	+		Echvi_1163	0.50	+0.1
1,333,824	-		Echvi_1163	0.50	-2.4
1,333,824	-		Echvi_1163	0.50	+0.3
1,333,842	+		Echvi_1163	0.51	+0.2
1,333,842	+		Echvi_1163	0.51	+3.1
1,333,843	-		Echvi_1163	0.51	+0.1
1,333,895	+		Echvi_1163	0.55	+0.8
1,333,896	-		Echvi_1163	0.55	-2.8
1,333,896	-		Echvi_1163	0.55	-1.8
1,333,896	-		Echvi_1163	0.55	+0.3
1,333,896	-		Echvi_1163	0.55	-1.0
1,333,909	-		Echvi_1163	0.56	-1.0
1,333,938	+		Echvi_1163	0.58	+0.4
1,333,939	-		Echvi_1163	0.58	-2.1
1,333,939	-		Echvi_1163	0.58	-0.5
1,333,939	-		Echvi_1163	0.58	-0.9
1,333,939	-		Echvi_1163	0.58	-2.6
1,333,949	+		Echvi_1163	0.58	+1.1
1,333,950	-		Echvi_1163	0.58	-0.3
1,333,950	-		Echvi_1163	0.58	-2.2
1,333,972	+		Echvi_1163	0.60	+1.5
1,333,973	-		Echvi_1163	0.60	+0.5
1,333,973	-		Echvi_1163	0.60	+0.0
1,333,973	-		Echvi_1163	0.60	-1.2
1,333,981	-		Echvi_1163	0.61	-0.8
1,333,981	-		Echvi_1163	0.61	-2.8
1,334,033	-		Echvi_1163	0.64	-1.4
1,334,072	-		Echvi_1163	0.67	-1.6
1,334,072	-		Echvi_1163	0.67	-2.6
1,334,150	+		Echvi_1163	0.72	+1.9
1,334,150	+		Echvi_1163	0.72	+1.8
1,334,153	+		Echvi_1163	0.73	-0.5
1,334,153	+		Echvi_1163	0.73	+2.2
1,334,153	+		Echvi_1163	0.73	+1.3
1,334,154	-		Echvi_1163	0.73	-0.8
1,334,154	-		Echvi_1163	0.73	+0.0
1,334,154	-		Echvi_1163	0.73	-2.6
1,334,154	-		Echvi_1163	0.73	+0.2
1,334,255	+		Echvi_1163	0.80	+1.5
1,334,256	-		Echvi_1163	0.80	-0.1
1,334,260	+		Echvi_1163	0.80	+0.9
1,334,261	-		Echvi_1163	0.80	+0.7
1,334,261	-		Echvi_1163	0.80	-0.2
1,334,273	-		Echvi_1163	0.81	+0.6
1,334,319	+		Echvi_1163	0.84	+2.4
1,334,378	+		Echvi_1163	0.88	+2.5
1,334,378	+		Echvi_1163	0.88	+1.0
1,334,379	-		Echvi_1163	0.89	-0.6
1,334,381	+		Echvi_1163	0.89	+1.2
1,334,381	+		Echvi_1163	0.89	-0.7
1,334,433	-				+1.9
1,334,433	-				-1.5
1,334,433	-				-0.7
1,334,472	+				+1.9
1,334,473	-				-0.1
1,334,473	-				-0.7
1,334,485	+				+1.0
1,334,511	+				+1.3
1,334,518	+				+0.7
1,334,530	+				+1.5
1,334,530	+				+1.3
1,334,530	+				+1.7
1,334,531	-				-1.9
1,334,531	-				-0.8
1,334,531	-				-0.8
1,334,531	-				-1.8
1,334,537	-				-0.5
1,334,537	-				-2.4
1,334,540	+				+1.8
1,334,540	+				+0.6
1,334,540	+				+2.4
1,334,541	-				-2.2
1,334,541	-				-1.0
1,334,619	+		Echvi_1164	0.53	+3.9
1,334,672	-				-0.7
1,334,672	-				-2.4
1,334,684	-				-1.3
1,334,687	+				+2.2
1,334,705	+				+3.3
1,334,706	-				-2.5
1,334,746	+				+3.5
1,334,747	-				-0.3
1,334,751	+				+1.7
1,334,755	+				+3.0
1,334,755	+				+3.7
1,334,756	-				-2.9
1,334,786	+				+3.1
1,334,787	-				-0.9
1,334,796	+				+2.9
1,334,797	-				-2.4
1,334,814	+				+1.1
1,334,946	+				+2.9
1,334,946	+				+2.8
1,334,946	+				+2.7
1,334,947	-				-0.6
1,334,947	-				+0.0
1,334,947	-				-1.5
1,334,948	+				+3.7
1,334,949	-				-0.9
1,334,959	+				+3.0
1,334,959	+				+1.3
1,334,961	+				+3.0
1,334,962	-				-1.0
1,334,986	-				-0.5
1,334,986	-				+0.4
1,334,991	+				+4.1
1,334,992	-				+0.6
1,334,992	-				-1.0
1,335,074	+				+1.7
1,335,074	+				+2.6
1,335,074	+				+2.7
1,335,075	-				+0.2
1,335,089	+				+3.2
1,335,090	-				-0.9
1,335,090	-				-2.3
1,335,095	+				+3.3
1,335,095	+				+3.6
1,335,095	+				+2.7
1,335,096	-				-0.7
1,335,107	-				-2.6
1,335,107	-				-0.1
1,335,107	-				-2.3
1,335,139	+				+2.9
1,335,154	-				-0.3
1,335,167	-				-1.9
1,335,167	-				-1.5
1,335,167	-				-0.2
1,335,167	-				+0.9
1,335,175	-				-1.7
1,335,187	-				-1.6
1,335,187	-				-0.4
1,335,187	-				+0.3
1,335,187	-				-0.8
1,335,189	-				-0.4
1,335,189	-				-1.6
1,335,189	-				-0.9
1,335,189	-				-2.8
1,335,189	-				-1.4
1,335,189	-				-2.2
1,335,189	-				-2.5
1,335,189	-				-2.6
1,335,189	-				-1.1
1,335,189	-				-2.9
1,335,189	-				-2.0
1,335,200	-				-0.1
1,335,202	-				-1.8
1,335,202	-				-1.8
1,335,202	-				-2.6
1,335,202	-				-2.5
1,335,220	+				+2.5
1,335,220	+				+3.3
1,335,220	+				+3.1
1,335,220	+				+1.6
1,335,223	-				-3.0
1,335,242	+				+3.9
1,335,324	+				-0.9
1,335,325	-				-4.9
1,335,429	-				-1.7
1,335,429	-				-2.9
1,335,460	-				-1.4
1,335,511	+				+0.3
1,335,538	+		Echvi_1165	0.10	-0.7
1,335,538	+		Echvi_1165	0.10	-2.3