Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0848 and Echvi_0849 are separated by 3 nucleotides Echvi_0849 and Echvi_0850 overlap by 1 nucleotides Echvi_0850 and Echvi_0851 are separated by 12 nucleotides Echvi_0851 and Echvi_0852 are separated by 107 nucleotides
Echvi_0848: Echvi_0848 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 971,162 to 971,950
_0848
Echvi_0849: Echvi_0849 - probable S-adenosylmethionine-dependent methyltransferase, YraL family, at 971,954 to 972,640
_0849
Echvi_0850: Echvi_0850 - Pterin-4a-carbinolamine dehydratase, at 972,640 to 972,870
_0850
Echvi_0851: Echvi_0851 - Uncharacterized conserved protein, at 972,883 to 973,152
_0851
Echvi_0852: Echvi_0852 - Parvulin-like peptidyl-prolyl isomerase, at 973,260 to 975,368
_0852
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 971.057 kb on + strand at 971.057 kb on + strand at 971.057 kb on + strand at 971.078 kb on + strand at 971.148 kb on - strand at 971.149 kb on + strand at 971.150 kb on - strand at 971.241 kb on + strand, within Echvi_0848 at 971.316 kb on + strand, within Echvi_0848 at 971.316 kb on + strand, within Echvi_0848 at 971.316 kb on + strand, within Echvi_0848 at 971.367 kb on + strand, within Echvi_0848 at 971.368 kb on - strand, within Echvi_0848 at 971.441 kb on + strand, within Echvi_0848 at 971.441 kb on + strand, within Echvi_0848 at 971.441 kb on + strand, within Echvi_0848 at 971.445 kb on + strand, within Echvi_0848 at 971.446 kb on - strand, within Echvi_0848 at 971.472 kb on + strand, within Echvi_0848 at 971.493 kb on - strand, within Echvi_0848 at 971.493 kb on - strand, within Echvi_0848 at 971.523 kb on - strand, within Echvi_0848 at 971.543 kb on - strand, within Echvi_0848 at 971.543 kb on - strand, within Echvi_0848 at 971.584 kb on + strand, within Echvi_0848 at 971.584 kb on + strand, within Echvi_0848 at 971.587 kb on + strand, within Echvi_0848 at 971.588 kb on - strand, within Echvi_0848 at 971.598 kb on + strand, within Echvi_0848 at 971.599 kb on - strand, within Echvi_0848 at 971.599 kb on - strand, within Echvi_0848 at 971.699 kb on + strand, within Echvi_0848 at 971.700 kb on - strand, within Echvi_0848 at 971.700 kb on - strand, within Echvi_0848 at 971.710 kb on + strand, within Echvi_0848 at 971.710 kb on + strand, within Echvi_0848 at 971.710 kb on + strand, within Echvi_0848 at 971.712 kb on + strand, within Echvi_0848 at 971.712 kb on + strand, within Echvi_0848 at 971.752 kb on + strand, within Echvi_0848 at 971.821 kb on - strand, within Echvi_0848 at 971.821 kb on - strand, within Echvi_0848 at 971.821 kb on - strand, within Echvi_0848 at 971.821 kb on - strand, within Echvi_0848 at 971.852 kb on + strand, within Echvi_0848 at 971.857 kb on + strand, within Echvi_0848 at 971.931 kb on - strand at 971.956 kb on - strand at 971.975 kb on - strand at 971.979 kb on - strand at 971.998 kb on + strand at 971.999 kb on - strand at 971.999 kb on - strand at 972.007 kb on + strand at 972.008 kb on - strand at 972.009 kb on + strand at 972.009 kb on + strand at 972.009 kb on + strand at 972.009 kb on + strand at 972.012 kb on + strand at 972.012 kb on + strand at 972.054 kb on + strand, within Echvi_0849 at 972.338 kb on + strand, within Echvi_0849 at 972.344 kb on + strand, within Echvi_0849 at 972.434 kb on + strand, within Echvi_0849 at 972.457 kb on + strand, within Echvi_0849 at 972.457 kb on + strand, within Echvi_0849 at 972.462 kb on + strand, within Echvi_0849 at 972.463 kb on - strand, within Echvi_0849 at 972.560 kb on + strand, within Echvi_0849 at 972.560 kb on + strand, within Echvi_0849 at 972.574 kb on + strand at 972.577 kb on + strand at 972.641 kb on + strand at 972.641 kb on + strand at 972.642 kb on - strand at 972.642 kb on - strand at 972.693 kb on + strand, within Echvi_0850 at 972.835 kb on + strand, within Echvi_0850 at 972.843 kb on + strand, within Echvi_0850 at 972.844 kb on - strand, within Echvi_0850 at 972.844 kb on - strand, within Echvi_0850 at 972.923 kb on + strand, within Echvi_0851 at 972.924 kb on - strand, within Echvi_0851 at 972.925 kb on + strand, within Echvi_0851 at 972.925 kb on + strand, within Echvi_0851 at 972.926 kb on - strand, within Echvi_0851 at 972.926 kb on - strand, within Echvi_0851 at 972.980 kb on + strand, within Echvi_0851 at 972.980 kb on + strand, within Echvi_0851 at 973.079 kb on + strand, within Echvi_0851 at 973.079 kb on + strand, within Echvi_0851 at 973.080 kb on - strand, within Echvi_0851 at 973.131 kb on + strand at 973.134 kb on + strand at 973.156 kb on - strand at 973.156 kb on - strand at 973.156 kb on - strand at 973.166 kb on - strand at 973.202 kb on - strand at 973.258 kb on + strand at 973.258 kb on + strand at 973.258 kb on + strand at 973.259 kb on - strand at 973.259 kb on - strand at 973.261 kb on + strand at 973.272 kb on - strand at 973.272 kb on - strand at 973.273 kb on + strand at 973.279 kb on + strand at 973.279 kb on + strand at 973.279 kb on + strand at 973.279 kb on + strand at 973.287 kb on - strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.323 kb on - strand at 973.323 kb on - strand at 973.324 kb on + strand at 973.324 kb on + strand at 973.324 kb on + strand at 973.324 kb on + strand at 973.325 kb on - strand at 973.325 kb on - strand at 973.325 kb on - strand at 973.331 kb on + strand at 973.331 kb on + strand at 973.332 kb on - strand at 973.353 kb on - strand at 973.383 kb on + strand at 973.434 kb on - strand at 973.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 971,057 + +0.4 971,057 + +1.0 971,057 + +1.1 971,078 + +0.5 971,148 - +0.3 971,149 + +1.4 971,150 - -0.2 971,241 + Echvi_0848 0.10 +1.2 971,316 + Echvi_0848 0.20 +0.2 971,316 + Echvi_0848 0.20 +0.7 971,316 + Echvi_0848 0.20 +2.7 971,367 + Echvi_0848 0.26 -0.4 971,368 - Echvi_0848 0.26 -1.3 971,441 + Echvi_0848 0.35 -0.5 971,441 + Echvi_0848 0.35 +0.1 971,441 + Echvi_0848 0.35 +1.3 971,445 + Echvi_0848 0.36 +2.0 971,446 - Echvi_0848 0.36 -1.4 971,472 + Echvi_0848 0.39 +1.4 971,493 - Echvi_0848 0.42 -1.0 971,493 - Echvi_0848 0.42 +0.5 971,523 - Echvi_0848 0.46 -0.4 971,543 - Echvi_0848 0.48 -1.9 971,543 - Echvi_0848 0.48 -1.5 971,584 + Echvi_0848 0.53 +0.9 971,584 + Echvi_0848 0.53 -0.2 971,587 + Echvi_0848 0.54 +1.6 971,588 - Echvi_0848 0.54 -0.6 971,598 + Echvi_0848 0.55 +1.5 971,599 - Echvi_0848 0.55 -1.7 971,599 - Echvi_0848 0.55 -0.6 971,699 + Echvi_0848 0.68 +1.0 971,700 - Echvi_0848 0.68 -1.3 971,700 - Echvi_0848 0.68 -0.4 971,710 + Echvi_0848 0.69 +0.7 971,710 + Echvi_0848 0.69 +1.4 971,710 + Echvi_0848 0.69 -1.0 971,712 + Echvi_0848 0.70 +0.6 971,712 + Echvi_0848 0.70 -2.5 971,752 + Echvi_0848 0.75 +0.1 971,821 - Echvi_0848 0.84 -0.0 971,821 - Echvi_0848 0.84 -0.4 971,821 - Echvi_0848 0.84 +0.5 971,821 - Echvi_0848 0.84 +0.8 971,852 + Echvi_0848 0.87 +0.7 971,857 + Echvi_0848 0.88 +1.2 971,931 - -1.8 971,956 - +1.7 971,975 - -3.4 971,979 - -2.5 971,998 + -1.9 971,999 - -2.3 971,999 - -2.2 972,007 + +1.0 972,008 - -1.3 972,009 + -1.5 972,009 + -1.7 972,009 + -1.8 972,009 + -1.2 972,012 + -1.3 972,012 + -1.0 972,054 + Echvi_0849 0.15 -1.2 972,338 + Echvi_0849 0.56 -0.6 972,344 + Echvi_0849 0.57 +0.5 972,434 + Echvi_0849 0.70 -0.5 972,457 + Echvi_0849 0.73 +2.5 972,457 + Echvi_0849 0.73 -0.4 972,462 + Echvi_0849 0.74 -1.2 972,463 - Echvi_0849 0.74 -3.6 972,560 + Echvi_0849 0.88 -2.3 972,560 + Echvi_0849 0.88 -3.4 972,574 + -1.8 972,577 + -2.2 972,641 + -0.3 972,641 + -0.6 972,642 - -0.9 972,642 - -3.6 972,693 + Echvi_0850 0.23 +1.0 972,835 + Echvi_0850 0.84 -1.8 972,843 + Echvi_0850 0.88 +0.3 972,844 - Echvi_0850 0.88 -1.7 972,844 - Echvi_0850 0.88 +2.0 972,923 + Echvi_0851 0.15 -2.8 972,924 - Echvi_0851 0.15 -1.5 972,925 + Echvi_0851 0.16 -0.3 972,925 + Echvi_0851 0.16 -2.0 972,926 - Echvi_0851 0.16 -1.7 972,926 - Echvi_0851 0.16 -0.6 972,980 + Echvi_0851 0.36 -2.0 972,980 + Echvi_0851 0.36 -3.0 973,079 + Echvi_0851 0.73 +1.0 973,079 + Echvi_0851 0.73 -2.6 973,080 - Echvi_0851 0.73 -0.8 973,131 + -0.8 973,134 + -1.2 973,156 - -2.5 973,156 - -3.1 973,156 - -1.8 973,166 - -2.6 973,202 - -1.6 973,258 + +0.6 973,258 + +0.6 973,258 + -1.2 973,259 - +0.1 973,259 - -0.3 973,261 + +0.1 973,272 - -0.0 973,272 - +1.8 973,273 + -0.5 973,279 + +3.0 973,279 + -0.3 973,279 + -0.0 973,279 + -0.4 973,287 - -0.1 973,322 + +1.4 973,322 + +2.2 973,322 + +0.8 973,322 + +2.2 973,322 + +1.0 973,323 - +2.2 973,323 - +0.4 973,324 + +0.2 973,324 + +0.8 973,324 + +1.5 973,324 + +1.9 973,325 - +1.3 973,325 - +2.6 973,325 - +1.3 973,331 + +1.7 973,331 + +0.9 973,332 - +1.3 973,353 - +0.8 973,383 + +1.2 973,434 - +2.6 973,446 - +1.4
Or see this region's nucleotide sequence