Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0838 and Echvi_0839 are separated by 642 nucleotides Echvi_0839 and Echvi_0840 are separated by 72 nucleotides Echvi_0840 and Echvi_0841 are separated by 513 nucleotides
Echvi_0838: Echvi_0838 - Outer membrane receptor for ferrienterochelin and colicins, at 955,318 to 958,470
_0838
Echvi_0839: Echvi_0839 - Predicted membrane protein, at 959,113 to 959,811
_0839
Echvi_0840: Echvi_0840 - hypothetical protein, at 959,884 to 960,039
_0840
Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307
_0841
Position (kb) 959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 958.139 kb on - strand, within Echvi_0838 at 958.219 kb on + strand at 958.220 kb on - strand at 958.242 kb on + strand at 958.263 kb on - strand at 958.263 kb on - strand at 958.274 kb on - strand at 958.294 kb on - strand at 958.325 kb on + strand at 958.436 kb on + strand at 958.436 kb on + strand at 958.436 kb on + strand at 958.436 kb on + strand at 958.437 kb on - strand at 958.437 kb on - strand at 958.487 kb on - strand at 958.489 kb on + strand at 958.492 kb on + strand at 958.492 kb on + strand at 958.493 kb on - strand at 958.493 kb on - strand at 958.493 kb on - strand at 958.493 kb on - strand at 958.504 kb on - strand at 958.708 kb on + strand at 958.708 kb on + strand at 958.708 kb on + strand at 958.817 kb on + strand at 958.860 kb on + strand at 958.915 kb on - strand at 958.915 kb on - strand at 958.976 kb on + strand at 958.989 kb on + strand at 958.993 kb on + strand at 958.993 kb on + strand at 958.994 kb on - strand at 958.997 kb on + strand at 958.997 kb on + strand at 958.997 kb on + strand at 958.998 kb on - strand at 958.998 kb on - strand at 958.998 kb on - strand at 959.054 kb on + strand at 959.055 kb on - strand at 959.055 kb on - strand at 959.060 kb on - strand at 959.129 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.141 kb on - strand at 959.141 kb on - strand at 959.141 kb on - strand at 959.141 kb on - strand at 959.146 kb on + strand at 959.147 kb on - strand at 959.150 kb on + strand at 959.150 kb on + strand at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.211 kb on + strand, within Echvi_0839 at 959.211 kb on + strand, within Echvi_0839 at 959.211 kb on + strand, within Echvi_0839 at 959.212 kb on - strand, within Echvi_0839 at 959.212 kb on - strand, within Echvi_0839 at 959.212 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.268 kb on - strand, within Echvi_0839 at 959.393 kb on + strand, within Echvi_0839 at 959.398 kb on + strand, within Echvi_0839 at 959.398 kb on + strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.400 kb on + strand, within Echvi_0839 at 959.400 kb on + strand, within Echvi_0839 at 959.400 kb on + strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.474 kb on - strand, within Echvi_0839 at 959.488 kb on + strand, within Echvi_0839 at 959.507 kb on + strand, within Echvi_0839 at 959.510 kb on - strand, within Echvi_0839 at 959.510 kb on - strand, within Echvi_0839 at 959.560 kb on + strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.633 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.643 kb on + strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.677 kb on - strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.823 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.849 kb on - strand at 959.849 kb on - strand at 959.861 kb on + strand at 959.861 kb on + strand at 959.927 kb on + strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.962 kb on - strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.013 kb on + strand, within Echvi_0840 at 960.100 kb on - strand at 960.111 kb on + strand at 960.180 kb on - strand at 960.195 kb on + strand at 960.195 kb on + strand at 960.232 kb on + strand at 960.232 kb on + strand at 960.233 kb on - strand at 960.242 kb on - strand at 960.276 kb on + strand at 960.277 kb on - strand at 960.277 kb on - strand at 960.303 kb on + strand at 960.304 kb on - strand at 960.309 kb on + strand at 960.318 kb on - strand at 960.378 kb on + strand at 960.379 kb on - strand at 960.423 kb on + strand at 960.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 958,139 - Echvi_0838 0.89 -0.3 958,219 + -1.6 958,220 - +0.0 958,242 + -0.3 958,263 - +0.2 958,263 - +0.1 958,274 - +2.0 958,294 - -0.8 958,325 + +0.2 958,436 + +0.9 958,436 + +0.5 958,436 + +1.5 958,436 + +0.1 958,437 - +0.1 958,437 - -2.3 958,487 - -0.9 958,489 + +0.3 958,492 + -2.1 958,492 + +0.2 958,493 - -0.4 958,493 - +1.4 958,493 - +1.8 958,493 - +0.5 958,504 - +1.4 958,708 + +1.4 958,708 + +1.3 958,708 + -0.4 958,817 + -2.1 958,860 + +2.1 958,915 - +0.4 958,915 - +0.8 958,976 + +0.2 958,989 + -0.4 958,993 + +0.7 958,993 + +0.4 958,994 - -2.4 958,997 + +0.4 958,997 + -0.1 958,997 + +0.7 958,998 - -2.2 958,998 - -0.3 958,998 - +0.4 959,054 + -0.3 959,055 - +0.7 959,055 - +0.2 959,060 - -2.2 959,129 + +0.6 959,140 + +1.1 959,140 + +0.3 959,140 + +1.0 959,140 + +0.2 959,140 + -0.1 959,141 - +0.3 959,141 - -1.0 959,141 - -0.5 959,141 - +0.1 959,146 + -0.4 959,147 - +2.2 959,150 + -1.4 959,150 + +0.3 959,210 - Echvi_0839 0.14 -0.6 959,210 - Echvi_0839 0.14 -0.8 959,210 - Echvi_0839 0.14 +0.5 959,210 - Echvi_0839 0.14 -0.2 959,210 - Echvi_0839 0.14 -0.3 959,211 + Echvi_0839 0.14 -0.3 959,211 + Echvi_0839 0.14 +1.4 959,211 + Echvi_0839 0.14 +0.8 959,212 - Echvi_0839 0.14 -1.6 959,212 - Echvi_0839 0.14 -0.3 959,212 - Echvi_0839 0.14 +1.4 959,232 - Echvi_0839 0.17 +0.7 959,232 - Echvi_0839 0.17 +0.1 959,232 - Echvi_0839 0.17 -0.4 959,232 - Echvi_0839 0.17 -0.5 959,268 - Echvi_0839 0.22 -0.2 959,393 + Echvi_0839 0.40 -0.1 959,398 + Echvi_0839 0.41 -0.3 959,398 + Echvi_0839 0.41 -0.2 959,399 - Echvi_0839 0.41 +0.3 959,399 - Echvi_0839 0.41 -0.6 959,399 - Echvi_0839 0.41 -0.8 959,399 - Echvi_0839 0.41 -0.1 959,400 + Echvi_0839 0.41 +0.2 959,400 + Echvi_0839 0.41 -1.6 959,400 + Echvi_0839 0.41 -0.6 959,401 - Echvi_0839 0.41 +1.0 959,401 - Echvi_0839 0.41 +0.0 959,401 - Echvi_0839 0.41 -0.7 959,401 - Echvi_0839 0.41 +0.1 959,401 - Echvi_0839 0.41 +0.6 959,474 - Echvi_0839 0.52 +0.7 959,488 + Echvi_0839 0.54 -1.5 959,507 + Echvi_0839 0.56 +2.0 959,510 - Echvi_0839 0.57 -0.5 959,510 - Echvi_0839 0.57 -0.9 959,560 + Echvi_0839 0.64 -2.0 959,620 - Echvi_0839 0.73 +0.4 959,620 - Echvi_0839 0.73 -0.1 959,631 + Echvi_0839 0.74 -0.5 959,631 + Echvi_0839 0.74 -0.5 959,632 - Echvi_0839 0.74 +0.3 959,632 - Echvi_0839 0.74 -0.1 959,633 + Echvi_0839 0.74 +2.6 959,639 + Echvi_0839 0.75 -0.7 959,639 + Echvi_0839 0.75 -0.2 959,639 + Echvi_0839 0.75 +1.7 959,639 + Echvi_0839 0.75 +0.1 959,640 - Echvi_0839 0.75 +0.0 959,640 - Echvi_0839 0.75 +1.0 959,640 - Echvi_0839 0.75 -2.0 959,640 - Echvi_0839 0.75 +0.4 959,640 - Echvi_0839 0.75 +0.0 959,640 - Echvi_0839 0.75 +1.6 959,643 + Echvi_0839 0.76 -1.2 959,646 - Echvi_0839 0.76 -0.3 959,646 - Echvi_0839 0.76 -1.3 959,676 + Echvi_0839 0.81 +0.4 959,676 + Echvi_0839 0.81 -0.5 959,677 - Echvi_0839 0.81 +0.8 959,708 + Echvi_0839 0.85 -0.6 959,708 + Echvi_0839 0.85 -0.3 959,823 + -2.7 959,848 + -2.6 959,848 + +1.9 959,848 + +0.0 959,848 + -0.8 959,848 + +0.4 959,848 + +2.4 959,849 - +0.6 959,849 - +0.6 959,861 + -2.2 959,861 + -0.2 959,927 + Echvi_0840 0.28 -0.3 959,928 - Echvi_0840 0.28 -0.3 959,928 - Echvi_0840 0.28 -0.2 959,938 - Echvi_0840 0.35 -1.6 959,938 - Echvi_0840 0.35 +1.1 959,962 - Echvi_0840 0.50 +0.0 960,011 + Echvi_0840 0.81 -0.5 960,011 + Echvi_0840 0.81 -0.8 960,011 + Echvi_0840 0.81 +1.0 960,011 + Echvi_0840 0.81 +0.0 960,013 + Echvi_0840 0.83 +0.7 960,100 - -0.1 960,111 + +0.3 960,180 - +0.4 960,195 + +0.1 960,195 + -0.1 960,232 + -1.2 960,232 + +0.9 960,233 - +0.9 960,242 - +1.8 960,276 + +0.6 960,277 - -0.1 960,277 - -0.5 960,303 + +1.0 960,304 - +0.0 960,309 + +0.6 960,318 - +0.2 960,378 + -0.3 960,379 - -0.1 960,423 + +0.4 960,424 - +0.2
Or see this region's nucleotide sequence