Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0831

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0830 and Echvi_0831 are separated by 18 nucleotidesEchvi_0831 and Echvi_0832 are separated by 10 nucleotidesEchvi_0832 and Echvi_0833 are separated by 25 nucleotidesEchvi_0833 and Echvi_0834 are separated by 42 nucleotides Echvi_0830: Echvi_0830 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 946,710 to 948,221 _0830 Echvi_0831: Echvi_0831 - hypothetical protein, at 948,240 to 948,746 _0831 Echvi_0832: Echvi_0832 - hypothetical protein, at 948,757 to 949,425 _0832 Echvi_0833: Echvi_0833 - hypothetical protein, at 949,451 to 949,600 _0833 Echvi_0834: Echvi_0834 - hypothetical protein, at 949,643 to 949,960 _0834 Position (kb) 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 947.264 kb on - strand, within Echvi_0830at 947.295 kb on + strand, within Echvi_0830at 947.296 kb on - strand, within Echvi_0830at 947.296 kb on - strand, within Echvi_0830at 947.301 kb on + strand, within Echvi_0830at 947.399 kb on - strand, within Echvi_0830at 947.399 kb on - strand, within Echvi_0830at 947.442 kb on + strand, within Echvi_0830at 947.443 kb on - strand, within Echvi_0830at 947.454 kb on + strand, within Echvi_0830at 947.455 kb on - strand, within Echvi_0830at 947.477 kb on + strand, within Echvi_0830at 947.478 kb on - strand, within Echvi_0830at 947.492 kb on + strand, within Echvi_0830at 947.501 kb on + strand, within Echvi_0830at 947.532 kb on + strand, within Echvi_0830at 947.533 kb on - strand, within Echvi_0830at 947.670 kb on + strand, within Echvi_0830at 947.670 kb on + strand, within Echvi_0830at 947.706 kb on + strand, within Echvi_0830at 947.711 kb on + strand, within Echvi_0830at 947.711 kb on + strand, within Echvi_0830at 947.715 kb on + strand, within Echvi_0830at 947.716 kb on - strand, within Echvi_0830at 947.779 kb on + strand, within Echvi_0830at 947.780 kb on - strand, within Echvi_0830at 947.869 kb on + strand, within Echvi_0830at 947.885 kb on - strand, within Echvi_0830at 947.897 kb on + strand, within Echvi_0830at 947.897 kb on + strand, within Echvi_0830at 948.039 kb on + strand, within Echvi_0830at 948.039 kb on + strand, within Echvi_0830at 948.040 kb on - strand, within Echvi_0830at 948.065 kb on + strand, within Echvi_0830at 948.086 kb on - strandat 948.135 kb on + strandat 948.135 kb on + strandat 948.135 kb on + strandat 948.135 kb on + strandat 948.147 kb on - strandat 948.161 kb on + strandat 948.161 kb on + strandat 948.161 kb on + strandat 948.162 kb on - strandat 948.166 kb on + strandat 948.172 kb on + strandat 948.172 kb on + strandat 948.173 kb on - strandat 948.173 kb on - strandat 948.173 kb on - strandat 948.173 kb on - strandat 948.174 kb on + strandat 948.174 kb on + strandat 948.175 kb on - strandat 948.175 kb on - strandat 948.184 kb on + strandat 948.184 kb on + strandat 948.184 kb on + strandat 948.185 kb on - strandat 948.220 kb on - strandat 948.241 kb on + strandat 948.353 kb on + strand, within Echvi_0831at 948.388 kb on + strand, within Echvi_0831at 948.394 kb on + strand, within Echvi_0831at 948.395 kb on - strand, within Echvi_0831at 948.395 kb on - strand, within Echvi_0831at 948.423 kb on - strand, within Echvi_0831at 948.454 kb on + strand, within Echvi_0831at 948.454 kb on + strand, within Echvi_0831at 948.455 kb on - strand, within Echvi_0831at 948.455 kb on - strand, within Echvi_0831at 948.498 kb on + strand, within Echvi_0831at 948.536 kb on + strand, within Echvi_0831at 948.584 kb on + strand, within Echvi_0831at 948.585 kb on - strand, within Echvi_0831at 948.589 kb on + strandat 948.589 kb on + strand, within Echvi_0831at 948.590 kb on - strand, within Echvi_0831at 948.590 kb on - strand, within Echvi_0831at 948.593 kb on + strand, within Echvi_0831at 948.594 kb on - strand, within Echvi_0831at 948.617 kb on + strand, within Echvi_0831at 948.617 kb on + strand, within Echvi_0831at 948.621 kb on + strand, within Echvi_0831at 948.621 kb on + strand, within Echvi_0831at 948.710 kb on + strandat 948.711 kb on - strandat 948.746 kb on + strandat 948.771 kb on + strandat 948.771 kb on + strandat 948.775 kb on + strandat 948.776 kb on - strandat 948.784 kb on + strandat 948.785 kb on - strandat 948.785 kb on - strandat 948.800 kb on + strandat 948.807 kb on + strandat 948.808 kb on - strandat 948.819 kb on - strandat 948.951 kb on - strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.076 kb on + strand, within Echvi_0832at 949.077 kb on - strand, within Echvi_0832at 949.087 kb on - strand, within Echvi_0832at 949.108 kb on - strand, within Echvi_0832at 949.145 kb on - strand, within Echvi_0832at 949.192 kb on - strand, within Echvi_0832at 949.247 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.251 kb on - strand, within Echvi_0832at 949.251 kb on - strand, within Echvi_0832at 949.282 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.338 kb on + strand, within Echvi_0832at 949.428 kb on + strandat 949.429 kb on - strandat 949.489 kb on - strand, within Echvi_0833at 949.519 kb on - strand, within Echvi_0833at 949.519 kb on - strand, within Echvi_0833at 949.523 kb on - strand, within Echvi_0833at 949.523 kb on - strand, within Echvi_0833at 949.525 kb on + strand, within Echvi_0833at 949.526 kb on - strand, within Echvi_0833at 949.526 kb on - strand, within Echvi_0833at 949.566 kb on + strand, within Echvi_0833at 949.566 kb on + strand, within Echvi_0833at 949.578 kb on - strand, within Echvi_0833at 949.657 kb on - strandat 949.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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947,264 - Echvi_0830 0.37 +0.1
947,295 + Echvi_0830 0.39 +1.4
947,296 - Echvi_0830 0.39 +1.9
947,296 - Echvi_0830 0.39 +1.4
947,301 + Echvi_0830 0.39 +0.8
947,399 - Echvi_0830 0.46 +1.6
947,399 - Echvi_0830 0.46 +0.2
947,442 + Echvi_0830 0.48 +0.7
947,443 - Echvi_0830 0.48 -1.5
947,454 + Echvi_0830 0.49 +1.7
947,455 - Echvi_0830 0.49 -1.6
947,477 + Echvi_0830 0.51 +1.0
947,478 - Echvi_0830 0.51 +1.1
947,492 + Echvi_0830 0.52 +1.2
947,501 + Echvi_0830 0.52 +1.5
947,532 + Echvi_0830 0.54 +1.1
947,533 - Echvi_0830 0.54 +1.3
947,670 + Echvi_0830 0.63 +0.7
947,670 + Echvi_0830 0.63 +1.9
947,706 + Echvi_0830 0.66 +1.7
947,711 + Echvi_0830 0.66 +1.4
947,711 + Echvi_0830 0.66 +0.2
947,715 + Echvi_0830 0.66 +0.5
947,716 - Echvi_0830 0.67 +0.9
947,779 + Echvi_0830 0.71 +1.5
947,780 - Echvi_0830 0.71 +1.6
947,869 + Echvi_0830 0.77 +0.0
947,885 - Echvi_0830 0.78 -0.2
947,897 + Echvi_0830 0.79 +0.2
947,897 + Echvi_0830 0.79 +0.7
948,039 + Echvi_0830 0.88 +1.7
948,039 + Echvi_0830 0.88 +0.7
948,040 - Echvi_0830 0.88 -0.3
948,065 + Echvi_0830 0.90 +1.0
948,086 - +1.8
948,135 + +0.4
948,135 + -0.1
948,135 + +3.4
948,135 + +1.0
948,147 - -0.3
948,161 + +0.8
948,161 + -1.5
948,161 + +0.6
948,162 - +1.4
948,166 + +0.7
948,172 + +1.0
948,172 + +1.5
948,173 - -1.1
948,173 - +0.8
948,173 - +1.6
948,173 - -0.2
948,174 + +1.0
948,174 + +2.0
948,175 - +2.0
948,175 - +1.4
948,184 + +0.8
948,184 + +0.7
948,184 + +0.4
948,185 - +1.8
948,220 - -0.6
948,241 + +0.4
948,353 + Echvi_0831 0.22 +0.5
948,388 + Echvi_0831 0.29 -0.3
948,394 + Echvi_0831 0.30 +0.1
948,395 - Echvi_0831 0.31 -0.4
948,395 - Echvi_0831 0.31 -0.4
948,423 - Echvi_0831 0.36 -0.2
948,454 + Echvi_0831 0.42 +0.0
948,454 + Echvi_0831 0.42 -1.1
948,455 - Echvi_0831 0.42 -1.9
948,455 - Echvi_0831 0.42 -0.2
948,498 + Echvi_0831 0.51 -0.1
948,536 + Echvi_0831 0.58 +0.0
948,584 + Echvi_0831 0.68 -0.5
948,585 - Echvi_0831 0.68 -1.5
948,589 + +0.4
948,589 + Echvi_0831 0.69 +0.1
948,590 - Echvi_0831 0.69 -0.8
948,590 - Echvi_0831 0.69 -0.1
948,593 + Echvi_0831 0.70 +0.2
948,594 - Echvi_0831 0.70 -1.1
948,617 + Echvi_0831 0.74 -0.4
948,617 + Echvi_0831 0.74 +0.4
948,621 + Echvi_0831 0.75 +1.0
948,621 + Echvi_0831 0.75 -1.2
948,710 + +0.4
948,711 - +0.8
948,746 + +0.2
948,771 + -1.0
948,771 + +2.7
948,775 + +1.0
948,776 - +1.8
948,784 + +0.0
948,785 - -0.1
948,785 - -0.5
948,800 + -0.4
948,807 + -3.4
948,808 - +0.3
948,819 - -0.2
948,951 - Echvi_0832 0.29 -0.4
949,032 + Echvi_0832 0.41 +0.2
949,032 + Echvi_0832 0.41 -0.3
949,033 - Echvi_0832 0.41 -0.3
949,033 - Echvi_0832 0.41 -0.1
949,034 + Echvi_0832 0.41 +0.6
949,034 + Echvi_0832 0.41 -0.0
949,034 + Echvi_0832 0.41 -2.3
949,035 - Echvi_0832 0.42 -0.7
949,035 - Echvi_0832 0.42 +0.8
949,042 - Echvi_0832 0.43 +2.1
949,042 - Echvi_0832 0.43 -0.1
949,042 - Echvi_0832 0.43 -0.6
949,068 - Echvi_0832 0.46 +0.3
949,068 - Echvi_0832 0.46 -0.5
949,076 + Echvi_0832 0.48 -0.3
949,077 - Echvi_0832 0.48 -0.5
949,087 - Echvi_0832 0.49 +0.9
949,108 - Echvi_0832 0.52 -0.3
949,145 - Echvi_0832 0.58 +0.2
949,192 - Echvi_0832 0.65 -1.2
949,247 + Echvi_0832 0.73 +1.0
949,250 + Echvi_0832 0.74 -0.2
949,250 + Echvi_0832 0.74 +0.0
949,250 + Echvi_0832 0.74 -0.2
949,251 - Echvi_0832 0.74 +0.6
949,251 - Echvi_0832 0.74 +1.3
949,282 - Echvi_0832 0.78 -0.2
949,323 - Echvi_0832 0.85 -0.1
949,323 - Echvi_0832 0.85 +0.1
949,323 - Echvi_0832 0.85 +0.3
949,338 + Echvi_0832 0.87 +0.2
949,428 + -2.8
949,429 - -0.4
949,489 - Echvi_0833 0.25 +0.2
949,519 - Echvi_0833 0.45 +0.5
949,519 - Echvi_0833 0.45 +0.6
949,523 - Echvi_0833 0.48 -1.2
949,523 - Echvi_0833 0.48 +1.2
949,525 + Echvi_0833 0.49 +0.5
949,526 - Echvi_0833 0.50 +0.7
949,526 - Echvi_0833 0.50 -0.1
949,566 + Echvi_0833 0.77 -1.2
949,566 + Echvi_0833 0.77 -0.8
949,578 - Echvi_0833 0.85 +0.9
949,657 - +0.4
949,657 - +0.4

Or see this region's nucleotide sequence