Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0791

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0790 and Echvi_0791 are separated by 202 nucleotidesEchvi_0791 and Echvi_0792 are separated by 121 nucleotides Echvi_0790: Echvi_0790 - hypothetical protein, at 901,275 to 902,162 _0790 Echvi_0791: Echvi_0791 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 902,365 to 903,618 _0791 Echvi_0792: Echvi_0792 - Aminopeptidase N, at 903,740 to 905,365 _0792 Position (kb) 902 903 904Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 901.389 kb on - strand, within Echvi_0790at 901.410 kb on - strand, within Echvi_0790at 901.419 kb on + strand, within Echvi_0790at 901.445 kb on + strand, within Echvi_0790at 901.445 kb on + strand, within Echvi_0790at 901.475 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.512 kb on + strand, within Echvi_0790at 901.513 kb on - strand, within Echvi_0790at 901.513 kb on - strand, within Echvi_0790at 901.538 kb on - strand, within Echvi_0790at 901.573 kb on - strand, within Echvi_0790at 901.648 kb on - strand, within Echvi_0790at 901.650 kb on + strand, within Echvi_0790at 901.684 kb on + strand, within Echvi_0790at 901.685 kb on - strand, within Echvi_0790at 901.692 kb on - strand, within Echvi_0790at 901.701 kb on + strand, within Echvi_0790at 901.702 kb on - strand, within Echvi_0790at 901.702 kb on - strand, within Echvi_0790at 901.717 kb on - strand, within Echvi_0790at 901.734 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.742 kb on - strand, within Echvi_0790at 901.782 kb on + strand, within Echvi_0790at 901.783 kb on - strand, within Echvi_0790at 901.783 kb on - strand, within Echvi_0790at 901.804 kb on + strand, within Echvi_0790at 901.804 kb on + strand, within Echvi_0790at 901.804 kb on + strand, within Echvi_0790at 901.805 kb on - strand, within Echvi_0790at 901.892 kb on + strand, within Echvi_0790at 901.892 kb on + strand, within Echvi_0790at 901.892 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.902 kb on - strand, within Echvi_0790at 901.902 kb on - strand, within Echvi_0790at 901.952 kb on - strand, within Echvi_0790at 901.958 kb on + strand, within Echvi_0790at 901.958 kb on + strand, within Echvi_0790at 902.020 kb on - strand, within Echvi_0790at 902.020 kb on - strand, within Echvi_0790at 902.064 kb on + strand, within Echvi_0790at 902.064 kb on + strand, within Echvi_0790at 902.065 kb on - strand, within Echvi_0790at 902.065 kb on - strand, within Echvi_0790at 902.133 kb on + strandat 902.133 kb on + strandat 902.139 kb on + strandat 902.143 kb on - strandat 902.198 kb on + strandat 902.236 kb on - strandat 902.263 kb on + strandat 902.264 kb on - strandat 902.264 kb on - strandat 902.327 kb on - strandat 902.339 kb on + strandat 902.365 kb on - strandat 902.449 kb on + strandat 902.450 kb on - strandat 902.511 kb on - strand, within Echvi_0791at 902.552 kb on + strand, within Echvi_0791at 902.552 kb on + strand, within Echvi_0791at 902.580 kb on - strand, within Echvi_0791at 902.658 kb on + strand, within Echvi_0791at 902.659 kb on - strand, within Echvi_0791at 902.659 kb on - strand, within Echvi_0791at 902.668 kb on + strand, within Echvi_0791at 902.668 kb on + strand, within Echvi_0791at 902.669 kb on - strand, within Echvi_0791at 902.780 kb on - strand, within Echvi_0791at 902.874 kb on + strand, within Echvi_0791at 902.879 kb on + strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.884 kb on + strand, within Echvi_0791at 902.884 kb on + strand, within Echvi_0791at 902.885 kb on - strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.911 kb on - strand, within Echvi_0791at 902.988 kb on + strand, within Echvi_0791at 902.989 kb on - strand, within Echvi_0791at 903.071 kb on - strand, within Echvi_0791at 903.087 kb on + strand, within Echvi_0791at 903.088 kb on - strand, within Echvi_0791at 903.131 kb on - strand, within Echvi_0791at 903.131 kb on - strand, within Echvi_0791at 903.132 kb on + strand, within Echvi_0791at 903.133 kb on - strand, within Echvi_0791at 903.133 kb on - strand, within Echvi_0791at 903.154 kb on - strand, within Echvi_0791at 903.219 kb on + strand, within Echvi_0791at 903.219 kb on + strand, within Echvi_0791at 903.239 kb on - strand, within Echvi_0791at 903.239 kb on - strand, within Echvi_0791at 903.241 kb on - strand, within Echvi_0791at 903.241 kb on - strand, within Echvi_0791at 903.241 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.328 kb on + strand, within Echvi_0791at 903.329 kb on - strand, within Echvi_0791at 903.329 kb on - strand, within Echvi_0791at 903.480 kb on + strand, within Echvi_0791at 903.496 kb on + strandat 903.496 kb on + strandat 903.501 kb on + strandat 903.502 kb on - strandat 903.502 kb on - strandat 903.533 kb on - strandat 903.565 kb on - strandat 903.665 kb on + strandat 903.689 kb on + strandat 903.701 kb on + strandat 903.701 kb on + strandat 903.741 kb on + strandat 903.756 kb on + strandat 903.773 kb on + strandat 903.773 kb on + strandat 903.773 kb on + strandat 903.774 kb on - strandat 903.835 kb on + strandat 903.898 kb on - strandat 903.948 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 904.038 kb on + strand, within Echvi_0792at 904.038 kb on + strand, within Echvi_0792at 904.039 kb on - strand, within Echvi_0792at 904.042 kb on + strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.058 kb on + strand, within Echvi_0792at 904.058 kb on + strand, within Echvi_0792at 904.139 kb on - strand, within Echvi_0792at 904.140 kb on + strand, within Echvi_0792at 904.155 kb on + strand, within Echvi_0792at 904.155 kb on + strand, within Echvi_0792at 904.155 kb on + strand, within Echvi_0792at 904.156 kb on - strand, within Echvi_0792at 904.156 kb on - strand, within Echvi_0792at 904.156 kb on - strand, within Echvi_0792at 904.269 kb on + strand, within Echvi_0792at 904.270 kb on - strand, within Echvi_0792at 904.270 kb on - strand, within Echvi_0792at 904.272 kb on + strand, within Echvi_0792at 904.273 kb on - strand, within Echvi_0792at 904.279 kb on + strand, within Echvi_0792at 904.279 kb on + strand, within Echvi_0792at 904.280 kb on - strand, within Echvi_0792at 904.342 kb on + strand, within Echvi_0792at 904.343 kb on - strand, within Echvi_0792at 904.376 kb on + strand, within Echvi_0792at 904.377 kb on - strand, within Echvi_0792at 904.403 kb on + strand, within Echvi_0792at 904.408 kb on + strand, within Echvi_0792at 904.409 kb on - strand, within Echvi_0792at 904.413 kb on + strand, within Echvi_0792at 904.464 kb on + strand, within Echvi_0792at 904.464 kb on + strand, within Echvi_0792at 904.464 kb on + strand, within Echvi_0792at 904.465 kb on - strand, within Echvi_0792at 904.518 kb on + strand, within Echvi_0792at 904.518 kb on + strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.540 kb on + strand, within Echvi_0792at 904.540 kb on + strand, within Echvi_0792at 904.540 kb on + strand, within Echvi_0792at 904.618 kb on + strand, within Echvi_0792

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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901,389 - Echvi_0790 0.13 -1.3
901,410 - Echvi_0790 0.15 -1.1
901,419 + Echvi_0790 0.16 +2.1
901,445 + Echvi_0790 0.19 +0.5
901,445 + Echvi_0790 0.19 -0.8
901,475 + Echvi_0790 0.23 +1.3
901,478 + Echvi_0790 0.23 -1.2
901,478 + Echvi_0790 0.23 +0.4
901,478 + Echvi_0790 0.23 +0.4
901,478 + Echvi_0790 0.23 -0.3
901,479 - Echvi_0790 0.23 +0.1
901,479 - Echvi_0790 0.23 +0.5
901,479 - Echvi_0790 0.23 +1.5
901,479 - Echvi_0790 0.23 -0.3
901,479 - Echvi_0790 0.23 -0.0
901,479 - Echvi_0790 0.23 +0.8
901,479 - Echvi_0790 0.23 +0.1
901,479 - Echvi_0790 0.23 +1.3
901,512 + Echvi_0790 0.27 +0.4
901,513 - Echvi_0790 0.27 +0.7
901,513 - Echvi_0790 0.27 +0.9
901,538 - Echvi_0790 0.30 -0.4
901,573 - Echvi_0790 0.34 +1.0
901,648 - Echvi_0790 0.42 -0.9
901,650 + Echvi_0790 0.42 -0.8
901,684 + Echvi_0790 0.46 -0.6
901,685 - Echvi_0790 0.46 -0.4
901,692 - Echvi_0790 0.47 +0.4
901,701 + Echvi_0790 0.48 -0.9
901,702 - Echvi_0790 0.48 +1.3
901,702 - Echvi_0790 0.48 +0.2
901,717 - Echvi_0790 0.50 -0.8
901,734 + Echvi_0790 0.52 +0.9
901,741 + Echvi_0790 0.52 +3.9
901,741 + Echvi_0790 0.52 +1.3
901,741 + Echvi_0790 0.52 -1.3
901,741 + Echvi_0790 0.52 -0.2
901,742 - Echvi_0790 0.53 -0.3
901,782 + Echvi_0790 0.57 +2.3
901,783 - Echvi_0790 0.57 -3.2
901,783 - Echvi_0790 0.57 +0.0
901,804 + Echvi_0790 0.60 +0.9
901,804 + Echvi_0790 0.60 +1.0
901,804 + Echvi_0790 0.60 -1.8
901,805 - Echvi_0790 0.60 +0.3
901,892 + Echvi_0790 0.69 -0.2
901,892 + Echvi_0790 0.69 -0.8
901,892 + Echvi_0790 0.69 +1.2
901,901 + Echvi_0790 0.70 +0.5
901,901 + Echvi_0790 0.70 -0.2
901,901 + Echvi_0790 0.70 -0.2
901,901 + Echvi_0790 0.70 -1.1
901,902 - Echvi_0790 0.71 -0.1
901,902 - Echvi_0790 0.71 -0.4
901,952 - Echvi_0790 0.76 +0.8
901,958 + Echvi_0790 0.77 +0.4
901,958 + Echvi_0790 0.77 -0.4
902,020 - Echvi_0790 0.84 +0.7
902,020 - Echvi_0790 0.84 +0.2
902,064 + Echvi_0790 0.89 +0.7
902,064 + Echvi_0790 0.89 +0.7
902,065 - Echvi_0790 0.89 +0.1
902,065 - Echvi_0790 0.89 +0.1
902,133 + +0.6
902,133 + +1.2
902,139 + -1.1
902,143 - -0.3
902,198 + +0.1
902,236 - -0.5
902,263 + -0.6
902,264 - -1.8
902,264 - -0.1
902,327 - -0.5
902,339 + -1.9
902,365 - -0.7
902,449 + -0.7
902,450 - +0.0
902,511 - Echvi_0791 0.12 -1.2
902,552 + Echvi_0791 0.15 +0.5
902,552 + Echvi_0791 0.15 -1.3
902,580 - Echvi_0791 0.17 +2.4
902,658 + Echvi_0791 0.23 -1.0
902,659 - Echvi_0791 0.23 -0.9
902,659 - Echvi_0791 0.23 -1.0
902,668 + Echvi_0791 0.24 -0.5
902,668 + Echvi_0791 0.24 +0.6
902,669 - Echvi_0791 0.24 -0.5
902,780 - Echvi_0791 0.33 +0.1
902,874 + Echvi_0791 0.41 -0.6
902,879 + Echvi_0791 0.41 +0.7
902,880 - Echvi_0791 0.41 +0.1
902,880 - Echvi_0791 0.41 +0.4
902,880 - Echvi_0791 0.41 -0.1
902,880 - Echvi_0791 0.41 +0.2
902,884 + Echvi_0791 0.41 -0.9
902,884 + Echvi_0791 0.41 -0.0
902,885 - Echvi_0791 0.41 +0.3
902,908 + Echvi_0791 0.43 +0.3
902,908 + Echvi_0791 0.43 -0.7
902,908 + Echvi_0791 0.43 -0.7
902,911 - Echvi_0791 0.44 -0.2
902,988 + Echvi_0791 0.50 -0.6
902,989 - Echvi_0791 0.50 -0.0
903,071 - Echvi_0791 0.56 -0.6
903,087 + Echvi_0791 0.58 +0.3
903,088 - Echvi_0791 0.58 -1.5
903,131 - Echvi_0791 0.61 -0.5
903,131 - Echvi_0791 0.61 -1.0
903,132 + Echvi_0791 0.61 -0.1
903,133 - Echvi_0791 0.61 -0.1
903,133 - Echvi_0791 0.61 -0.2
903,154 - Echvi_0791 0.63 +0.4
903,219 + Echvi_0791 0.68 +0.4
903,219 + Echvi_0791 0.68 -1.2
903,239 - Echvi_0791 0.70 -1.0
903,239 - Echvi_0791 0.70 +0.1
903,241 - Echvi_0791 0.70 -0.8
903,241 - Echvi_0791 0.70 +2.3
903,241 - Echvi_0791 0.70 +0.3
903,300 - Echvi_0791 0.75 +1.3
903,300 - Echvi_0791 0.75 -1.4
903,300 - Echvi_0791 0.75 -0.5
903,300 - Echvi_0791 0.75 -0.9
903,328 + Echvi_0791 0.77 +0.0
903,329 - Echvi_0791 0.77 -0.5
903,329 - Echvi_0791 0.77 -0.9
903,480 + Echvi_0791 0.89 -3.1
903,496 + +0.7
903,496 + -0.9
903,501 + +0.4
903,502 - -0.1
903,502 - -0.6
903,533 - -0.3
903,565 - -0.1
903,665 + +1.0
903,689 + -0.8
903,701 + -0.4
903,701 + -1.3
903,741 + +0.9
903,756 + +1.8
903,773 + +2.0
903,773 + +0.7
903,773 + +0.4
903,774 - -0.0
903,835 + +0.6
903,898 - +0.0
903,948 + Echvi_0792 0.13 -0.5
903,954 + Echvi_0792 0.13 +0.7
903,954 + Echvi_0792 0.13 -0.5
903,954 + Echvi_0792 0.13 -0.7
903,954 + Echvi_0792 0.13 -0.8
903,954 + Echvi_0792 0.13 -0.9
903,954 + Echvi_0792 0.13 +1.7
903,954 + Echvi_0792 0.13 +0.2
903,954 + Echvi_0792 0.13 +0.7
903,954 + Echvi_0792 0.13 -0.5
903,955 - Echvi_0792 0.13 -0.3
903,955 - Echvi_0792 0.13 +1.7
903,955 - Echvi_0792 0.13 +0.5
903,955 - Echvi_0792 0.13 -1.8
904,038 + Echvi_0792 0.18 -1.7
904,038 + Echvi_0792 0.18 +0.1
904,039 - Echvi_0792 0.18 -0.5
904,042 + Echvi_0792 0.19 -0.3
904,043 - Echvi_0792 0.19 +0.8
904,043 - Echvi_0792 0.19 +0.9
904,043 - Echvi_0792 0.19 -0.4
904,043 - Echvi_0792 0.19 +0.7
904,058 + Echvi_0792 0.20 +1.4
904,058 + Echvi_0792 0.20 +0.3
904,139 - Echvi_0792 0.25 -0.1
904,140 + Echvi_0792 0.25 -0.3
904,155 + Echvi_0792 0.26 -0.1
904,155 + Echvi_0792 0.26 -1.2
904,155 + Echvi_0792 0.26 +0.1
904,156 - Echvi_0792 0.26 -1.1
904,156 - Echvi_0792 0.26 +1.4
904,156 - Echvi_0792 0.26 +1.6
904,269 + Echvi_0792 0.33 -0.0
904,270 - Echvi_0792 0.33 +0.1
904,270 - Echvi_0792 0.33 +2.0
904,272 + Echvi_0792 0.33 -1.0
904,273 - Echvi_0792 0.33 -0.1
904,279 + Echvi_0792 0.33 -1.2
904,279 + Echvi_0792 0.33 -0.6
904,280 - Echvi_0792 0.33 -0.7
904,342 + Echvi_0792 0.37 -0.0
904,343 - Echvi_0792 0.37 +0.6
904,376 + Echvi_0792 0.39 -0.0
904,377 - Echvi_0792 0.39 -0.5
904,403 + Echvi_0792 0.41 -0.0
904,408 + Echvi_0792 0.41 -0.8
904,409 - Echvi_0792 0.41 -2.3
904,413 + Echvi_0792 0.41 +0.0
904,464 + Echvi_0792 0.45 +0.6
904,464 + Echvi_0792 0.45 +0.5
904,464 + Echvi_0792 0.45 +0.8
904,465 - Echvi_0792 0.45 +0.2
904,518 + Echvi_0792 0.48 +0.0
904,518 + Echvi_0792 0.48 -0.6
904,519 - Echvi_0792 0.48 +0.1
904,519 - Echvi_0792 0.48 -0.0
904,519 - Echvi_0792 0.48 -0.5
904,519 - Echvi_0792 0.48 +0.9
904,540 + Echvi_0792 0.49 -0.0
904,540 + Echvi_0792 0.49 -0.1
904,540 + Echvi_0792 0.49 -1.7
904,618 + Echvi_0792 0.54 +0.2

Or see this region's nucleotide sequence