Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0702 and Echvi_0703 overlap by 23 nucleotides Echvi_0703 and Echvi_0704 are separated by 128 nucleotides Echvi_0704 and Echvi_0705 are separated by 122 nucleotides Echvi_0705 and Echvi_0706 are separated by 99 nucleotides Echvi_0706 and Echvi_0707 are separated by 102 nucleotides
Echvi_0702: Echvi_0702 - hypothetical protein, at 794,894 to 796,072
_0702
Echvi_0703: Echvi_0703 - hypothetical protein, at 796,050 to 796,541
_0703
Echvi_0704: Echvi_0704 - hypothetical protein, at 796,670 to 797,131
_0704
Echvi_0705: Echvi_0705 - hypothetical protein, at 797,254 to 797,748
_0705
Echvi_0706: Echvi_0706 - hypothetical protein, at 797,848 to 797,946
_0706
Echvi_0707: Echvi_0707 - Uncharacterized protein conserved in bacteria, at 798,049 to 798,519
_0707
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2 at 795.676 kb on - strand, within Echvi_0702 at 795.690 kb on + strand, within Echvi_0702 at 795.691 kb on - strand, within Echvi_0702 at 795.735 kb on + strand, within Echvi_0702 at 795.743 kb on - strand, within Echvi_0702 at 795.743 kb on - strand, within Echvi_0702 at 795.770 kb on - strand, within Echvi_0702 at 795.781 kb on + strand, within Echvi_0702 at 795.801 kb on + strand, within Echvi_0702 at 795.803 kb on + strand, within Echvi_0702 at 795.809 kb on + strand, within Echvi_0702 at 795.810 kb on - strand, within Echvi_0702 at 795.813 kb on - strand, within Echvi_0702 at 795.816 kb on + strand, within Echvi_0702 at 795.827 kb on - strand, within Echvi_0702 at 795.844 kb on + strand, within Echvi_0702 at 795.845 kb on - strand, within Echvi_0702 at 795.847 kb on + strand, within Echvi_0702 at 795.847 kb on + strand, within Echvi_0702 at 795.847 kb on + strand, within Echvi_0702 at 795.847 kb on + strand, within Echvi_0702 at 795.848 kb on - strand, within Echvi_0702 at 795.848 kb on - strand, within Echvi_0702 at 795.904 kb on + strand, within Echvi_0702 at 795.905 kb on - strand, within Echvi_0702 at 795.924 kb on + strand, within Echvi_0702 at 795.926 kb on + strand, within Echvi_0702 at 795.926 kb on + strand, within Echvi_0702 at 795.926 kb on + strand, within Echvi_0702 at 795.958 kb on - strand at 796.001 kb on - strand at 796.015 kb on + strand at 796.016 kb on - strand at 796.024 kb on - strand at 796.024 kb on - strand at 796.024 kb on - strand at 796.071 kb on - strand at 796.074 kb on - strand at 796.094 kb on - strand at 796.120 kb on + strand, within Echvi_0703 at 796.167 kb on + strand, within Echvi_0703 at 796.168 kb on - strand, within Echvi_0703 at 796.174 kb on + strand, within Echvi_0703 at 796.175 kb on - strand, within Echvi_0703 at 796.175 kb on - strand, within Echvi_0703 at 796.175 kb on - strand, within Echvi_0703 at 796.178 kb on + strand, within Echvi_0703 at 796.178 kb on + strand, within Echvi_0703 at 796.179 kb on - strand, within Echvi_0703 at 796.212 kb on + strand, within Echvi_0703 at 796.213 kb on - strand, within Echvi_0703 at 796.222 kb on + strand, within Echvi_0703 at 796.222 kb on + strand, within Echvi_0703 at 796.222 kb on + strand, within Echvi_0703 at 796.232 kb on + strand, within Echvi_0703 at 796.232 kb on + strand, within Echvi_0703 at 796.257 kb on - strand, within Echvi_0703 at 796.274 kb on + strand, within Echvi_0703 at 796.275 kb on - strand, within Echvi_0703 at 796.337 kb on - strand, within Echvi_0703 at 796.337 kb on - strand, within Echvi_0703 at 796.345 kb on - strand, within Echvi_0703 at 796.401 kb on + strand, within Echvi_0703 at 796.401 kb on + strand, within Echvi_0703 at 796.401 kb on + strand, within Echvi_0703 at 796.402 kb on - strand, within Echvi_0703 at 796.433 kb on + strand, within Echvi_0703 at 796.434 kb on - strand, within Echvi_0703 at 796.434 kb on - strand, within Echvi_0703 at 796.463 kb on + strand, within Echvi_0703 at 796.464 kb on - strand, within Echvi_0703 at 796.486 kb on + strand, within Echvi_0703 at 796.487 kb on - strand, within Echvi_0703 at 796.512 kb on - strand at 796.539 kb on + strand at 796.540 kb on - strand at 796.540 kb on - strand at 796.557 kb on - strand at 796.558 kb on + strand at 796.570 kb on + strand at 796.570 kb on + strand at 796.571 kb on - strand at 796.571 kb on - strand at 796.571 kb on - strand at 796.636 kb on + strand at 796.637 kb on - strand at 796.648 kb on + strand at 796.648 kb on + strand at 796.648 kb on + strand at 796.649 kb on - strand at 796.649 kb on - strand at 796.649 kb on - strand at 796.661 kb on + strand at 796.681 kb on + strand at 796.712 kb on - strand at 796.784 kb on - strand, within Echvi_0704 at 796.784 kb on - strand, within Echvi_0704 at 796.787 kb on + strand, within Echvi_0704 at 796.787 kb on + strand, within Echvi_0704 at 796.787 kb on + strand, within Echvi_0704 at 796.788 kb on - strand, within Echvi_0704 at 796.792 kb on - strand, within Echvi_0704 at 796.797 kb on + strand, within Echvi_0704 at 796.797 kb on + strand, within Echvi_0704 at 796.798 kb on - strand, within Echvi_0704 at 796.798 kb on - strand, within Echvi_0704 at 796.826 kb on + strand, within Echvi_0704 at 796.864 kb on + strand, within Echvi_0704 at 796.864 kb on + strand, within Echvi_0704 at 796.864 kb on + strand, within Echvi_0704 at 796.864 kb on + strand, within Echvi_0704 at 796.927 kb on + strand, within Echvi_0704 at 796.927 kb on + strand, within Echvi_0704 at 796.927 kb on + strand, within Echvi_0704 at 796.927 kb on + strand, within Echvi_0704 at 796.931 kb on - strand, within Echvi_0704 at 796.931 kb on - strand, within Echvi_0704 at 796.936 kb on + strand, within Echvi_0704 at 796.979 kb on - strand, within Echvi_0704 at 797.003 kb on - strand, within Echvi_0704 at 797.003 kb on - strand, within Echvi_0704 at 797.003 kb on - strand, within Echvi_0704 at 797.091 kb on - strand at 797.094 kb on + strand at 797.107 kb on + strand at 797.110 kb on + strand at 797.110 kb on + strand at 797.111 kb on - strand at 797.111 kb on - strand at 797.120 kb on - strand at 797.188 kb on - strand at 797.196 kb on + strand at 797.196 kb on + strand at 797.205 kb on + strand at 797.206 kb on - strand at 797.217 kb on + strand at 797.228 kb on + strand at 797.228 kb on + strand at 797.230 kb on + strand at 797.237 kb on + strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.277 kb on + strand at 797.314 kb on + strand, within Echvi_0705 at 797.315 kb on - strand, within Echvi_0705 at 797.344 kb on + strand, within Echvi_0705 at 797.344 kb on + strand, within Echvi_0705 at 797.345 kb on - strand, within Echvi_0705 at 797.347 kb on - strand, within Echvi_0705 at 797.347 kb on - strand, within Echvi_0705 at 797.347 kb on - strand, within Echvi_0705 at 797.352 kb on + strand, within Echvi_0705 at 797.353 kb on - strand, within Echvi_0705 at 797.362 kb on - strand, within Echvi_0705 at 797.377 kb on - strand, within Echvi_0705 at 797.393 kb on + strand, within Echvi_0705 at 797.393 kb on + strand, within Echvi_0705 at 797.409 kb on - strand, within Echvi_0705 at 797.435 kb on + strand, within Echvi_0705 at 797.435 kb on + strand, within Echvi_0705 at 797.436 kb on - strand, within Echvi_0705 at 797.436 kb on - strand, within Echvi_0705 at 797.441 kb on - strand, within Echvi_0705 at 797.461 kb on - strand, within Echvi_0705 at 797.564 kb on + strand, within Echvi_0705 at 797.570 kb on + strand, within Echvi_0705 at 797.570 kb on + strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.594 kb on + strand, within Echvi_0705 at 797.594 kb on + strand, within Echvi_0705 at 797.595 kb on - strand, within Echvi_0705 at 797.608 kb on + strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.708 kb on - strand at 797.717 kb on + strand at 797.723 kb on + strand at 797.723 kb on + strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.747 kb on - strand at 797.823 kb on - strand at 797.946 kb on + strand at 797.950 kb on + strand at 797.993 kb on + strand at 798.035 kb on + strand at 798.035 kb on + strand at 798.039 kb on + strand at 798.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 795,676 - Echvi_0702 0.66 +0.9 795,690 + Echvi_0702 0.68 -0.9 795,691 - Echvi_0702 0.68 +0.9 795,735 + Echvi_0702 0.71 +1.1 795,743 - Echvi_0702 0.72 -1.0 795,743 - Echvi_0702 0.72 -1.7 795,770 - Echvi_0702 0.74 +0.5 795,781 + Echvi_0702 0.75 -0.3 795,801 + Echvi_0702 0.77 +0.2 795,803 + Echvi_0702 0.77 +0.5 795,809 + Echvi_0702 0.78 -0.0 795,810 - Echvi_0702 0.78 +0.4 795,813 - Echvi_0702 0.78 -0.0 795,816 + Echvi_0702 0.78 +0.4 795,827 - Echvi_0702 0.79 +0.2 795,844 + Echvi_0702 0.81 -0.5 795,845 - Echvi_0702 0.81 -0.5 795,847 + Echvi_0702 0.81 -1.3 795,847 + Echvi_0702 0.81 -0.8 795,847 + Echvi_0702 0.81 +0.0 795,847 + Echvi_0702 0.81 -1.1 795,848 - Echvi_0702 0.81 -0.6 795,848 - Echvi_0702 0.81 -0.1 795,904 + Echvi_0702 0.86 -0.5 795,905 - Echvi_0702 0.86 +1.0 795,924 + Echvi_0702 0.87 -1.3 795,926 + Echvi_0702 0.88 -1.2 795,926 + Echvi_0702 0.88 -0.2 795,926 + Echvi_0702 0.88 +0.0 795,958 - +0.3 796,001 - -1.0 796,015 + +0.5 796,016 - -1.7 796,024 - -1.5 796,024 - +0.6 796,024 - +0.8 796,071 - +0.2 796,074 - +2.0 796,094 - -1.5 796,120 + Echvi_0703 0.14 -0.4 796,167 + Echvi_0703 0.24 +1.5 796,168 - Echvi_0703 0.24 +0.4 796,174 + Echvi_0703 0.25 +1.8 796,175 - Echvi_0703 0.25 +0.0 796,175 - Echvi_0703 0.25 +0.2 796,175 - Echvi_0703 0.25 +0.6 796,178 + Echvi_0703 0.26 +1.1 796,178 + Echvi_0703 0.26 +1.2 796,179 - Echvi_0703 0.26 +0.7 796,212 + Echvi_0703 0.33 -0.7 796,213 - Echvi_0703 0.33 -0.9 796,222 + Echvi_0703 0.35 -1.2 796,222 + Echvi_0703 0.35 -1.6 796,222 + Echvi_0703 0.35 -0.7 796,232 + Echvi_0703 0.37 -0.1 796,232 + Echvi_0703 0.37 +0.2 796,257 - Echvi_0703 0.42 +0.4 796,274 + Echvi_0703 0.46 -1.8 796,275 - Echvi_0703 0.46 -0.1 796,337 - Echvi_0703 0.58 -1.0 796,337 - Echvi_0703 0.58 -0.4 796,345 - Echvi_0703 0.60 +2.5 796,401 + Echvi_0703 0.71 +0.3 796,401 + Echvi_0703 0.71 -1.0 796,401 + Echvi_0703 0.71 -0.6 796,402 - Echvi_0703 0.72 -0.4 796,433 + Echvi_0703 0.78 -1.5 796,434 - Echvi_0703 0.78 +0.9 796,434 - Echvi_0703 0.78 -0.4 796,463 + Echvi_0703 0.84 +0.3 796,464 - Echvi_0703 0.84 +0.1 796,486 + Echvi_0703 0.89 -0.4 796,487 - Echvi_0703 0.89 +0.8 796,512 - -0.8 796,539 + +1.4 796,540 - +0.1 796,540 - -1.9 796,557 - -0.5 796,558 + +0.7 796,570 + +0.4 796,570 + -0.2 796,571 - +0.8 796,571 - +1.0 796,571 - +0.0 796,636 + +2.4 796,637 - -0.7 796,648 + -0.0 796,648 + -1.8 796,648 + +1.4 796,649 - -0.6 796,649 - +0.4 796,649 - +0.4 796,661 + +0.3 796,681 + +1.8 796,712 - -1.5 796,784 - Echvi_0704 0.25 +1.2 796,784 - Echvi_0704 0.25 -0.5 796,787 + Echvi_0704 0.25 +0.9 796,787 + Echvi_0704 0.25 +1.4 796,787 + Echvi_0704 0.25 -0.4 796,788 - Echvi_0704 0.26 +0.2 796,792 - Echvi_0704 0.26 +0.5 796,797 + Echvi_0704 0.27 +0.4 796,797 + Echvi_0704 0.27 -1.8 796,798 - Echvi_0704 0.28 +1.0 796,798 - Echvi_0704 0.28 -1.6 796,826 + Echvi_0704 0.34 +0.7 796,864 + Echvi_0704 0.42 +1.4 796,864 + Echvi_0704 0.42 +0.0 796,864 + Echvi_0704 0.42 +0.5 796,864 + Echvi_0704 0.42 +0.1 796,927 + Echvi_0704 0.56 -0.4 796,927 + Echvi_0704 0.56 +0.0 796,927 + Echvi_0704 0.56 -2.1 796,927 + Echvi_0704 0.56 -0.1 796,931 - Echvi_0704 0.56 +0.4 796,931 - Echvi_0704 0.56 +1.3 796,936 + Echvi_0704 0.58 -1.9 796,979 - Echvi_0704 0.67 +0.2 797,003 - Echvi_0704 0.72 -1.0 797,003 - Echvi_0704 0.72 +1.8 797,003 - Echvi_0704 0.72 -0.2 797,091 - -1.7 797,094 + -1.9 797,107 + -0.0 797,110 + +0.2 797,110 + -1.2 797,111 - -0.5 797,111 - +0.2 797,120 - -0.4 797,188 - -0.6 797,196 + +0.9 797,196 + -0.6 797,205 + +0.3 797,206 - -0.1 797,217 + -0.6 797,228 + +0.2 797,228 + -0.3 797,230 + -0.7 797,237 + +0.4 797,238 - +1.4 797,238 - +0.5 797,238 - +1.4 797,238 - -0.9 797,238 - +0.7 797,238 - -0.4 797,277 + +1.0 797,314 + Echvi_0705 0.12 +1.7 797,315 - Echvi_0705 0.12 -0.6 797,344 + Echvi_0705 0.18 -0.0 797,344 + Echvi_0705 0.18 -0.5 797,345 - Echvi_0705 0.18 +1.4 797,347 - Echvi_0705 0.19 +1.0 797,347 - Echvi_0705 0.19 -0.6 797,347 - Echvi_0705 0.19 +0.6 797,352 + Echvi_0705 0.20 -0.1 797,353 - Echvi_0705 0.20 +1.2 797,362 - Echvi_0705 0.22 +0.2 797,377 - Echvi_0705 0.25 +0.5 797,393 + Echvi_0705 0.28 -0.2 797,393 + Echvi_0705 0.28 +0.6 797,409 - Echvi_0705 0.31 +0.8 797,435 + Echvi_0705 0.37 +0.3 797,435 + Echvi_0705 0.37 -0.2 797,436 - Echvi_0705 0.37 -0.5 797,436 - Echvi_0705 0.37 +1.0 797,441 - Echvi_0705 0.38 +1.7 797,461 - Echvi_0705 0.42 -0.2 797,564 + Echvi_0705 0.63 -0.9 797,570 + Echvi_0705 0.64 -1.0 797,570 + Echvi_0705 0.64 +0.2 797,571 - Echvi_0705 0.64 +0.1 797,571 - Echvi_0705 0.64 +1.0 797,571 - Echvi_0705 0.64 -0.0 797,594 + Echvi_0705 0.69 -0.8 797,594 + Echvi_0705 0.69 -0.9 797,595 - Echvi_0705 0.69 -0.2 797,608 + Echvi_0705 0.72 +0.8 797,658 - Echvi_0705 0.82 +0.8 797,658 - Echvi_0705 0.82 +0.9 797,658 - Echvi_0705 0.82 +0.9 797,708 - +1.4 797,717 + -1.3 797,723 + +1.4 797,723 + -0.2 797,724 - -2.6 797,724 - +1.0 797,724 - -1.0 797,724 - -1.5 797,724 - -0.4 797,747 - +1.5 797,823 - -0.4 797,946 + +1.5 797,950 + -0.4 797,993 + +0.0 798,035 + -1.0 798,035 + -1.9 798,039 + -1.6 798,039 + -1.2
Or see this region's nucleotide sequence