Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0688 and Echvi_0689 are separated by 77 nucleotides Echvi_0689 and Echvi_0690 are separated by 587 nucleotides Echvi_0690 and Echvi_0691 are separated by 119 nucleotides
Echvi_0688: Echvi_0688 - Adhesion protein FadA., at 777,653 to 778,117
_0688
Echvi_0689: Echvi_0689 - hypothetical protein, at 778,195 to 778,311
_0689
Echvi_0690: Echvi_0690 - hypothetical protein, at 778,899 to 779,273
_0690
Echvi_0691: Echvi_0691 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 779,393 to 781,570
_0691
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 777.910 kb on + strand, within Echvi_0688 at 777.910 kb on + strand, within Echvi_0688 at 777.956 kb on - strand, within Echvi_0688 at 778.101 kb on - strand at 778.108 kb on - strand at 778.111 kb on + strand at 778.112 kb on - strand at 778.117 kb on + strand at 778.117 kb on + strand at 778.118 kb on - strand at 778.139 kb on + strand at 778.150 kb on - strand at 778.196 kb on + strand at 778.322 kb on + strand at 778.346 kb on + strand at 778.346 kb on + strand at 778.416 kb on + strand at 778.460 kb on - strand at 778.464 kb on - strand at 778.535 kb on - strand at 778.535 kb on - strand at 778.536 kb on + strand at 778.536 kb on + strand at 778.537 kb on - strand at 778.537 kb on - strand at 778.566 kb on + strand at 778.566 kb on + strand at 778.566 kb on + strand at 778.568 kb on + strand at 778.569 kb on - strand at 778.569 kb on - strand at 778.569 kb on - strand at 778.569 kb on - strand at 778.570 kb on + strand at 778.570 kb on + strand at 778.570 kb on + strand at 778.570 kb on + strand at 778.571 kb on - strand at 778.571 kb on - strand at 778.571 kb on - strand at 778.592 kb on + strand at 778.593 kb on - strand at 778.593 kb on - strand at 778.593 kb on - strand at 778.593 kb on - strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.595 kb on - strand at 778.595 kb on - strand at 778.627 kb on + strand at 778.627 kb on + strand at 778.628 kb on - strand at 778.628 kb on - strand at 778.633 kb on + strand at 778.651 kb on + strand at 778.652 kb on - strand at 778.660 kb on - strand at 778.660 kb on - strand at 778.691 kb on + strand at 778.722 kb on + strand at 778.723 kb on - strand at 778.724 kb on + strand at 778.724 kb on + strand at 778.725 kb on - strand at 778.732 kb on + strand at 778.747 kb on + strand at 778.747 kb on + strand at 778.753 kb on + strand at 778.754 kb on - strand at 778.754 kb on - strand at 778.788 kb on - strand at 778.805 kb on + strand at 778.900 kb on + strand at 778.900 kb on + strand at 778.953 kb on - strand, within Echvi_0690 at 778.956 kb on - strand, within Echvi_0690 at 778.978 kb on + strand, within Echvi_0690 at 778.978 kb on + strand, within Echvi_0690 at 779.051 kb on + strand, within Echvi_0690 at 779.052 kb on - strand, within Echvi_0690 at 779.055 kb on + strand, within Echvi_0690 at 779.055 kb on + strand, within Echvi_0690 at 779.056 kb on - strand, within Echvi_0690 at 779.084 kb on + strand, within Echvi_0690 at 779.085 kb on - strand, within Echvi_0690 at 779.085 kb on - strand, within Echvi_0690 at 779.088 kb on - strand, within Echvi_0690 at 779.131 kb on - strand, within Echvi_0690 at 779.161 kb on + strand, within Echvi_0690 at 779.194 kb on + strand, within Echvi_0690 at 779.195 kb on - strand, within Echvi_0690 at 779.277 kb on + strand at 779.278 kb on - strand at 779.278 kb on - strand at 779.297 kb on + strand at 779.297 kb on + strand at 779.350 kb on + strand at 779.351 kb on - strand at 779.359 kb on + strand at 779.359 kb on + strand at 779.395 kb on - strand at 779.395 kb on - strand at 779.430 kb on + strand at 779.430 kb on + strand at 779.431 kb on - strand at 779.457 kb on + strand at 779.473 kb on + strand at 779.484 kb on + strand at 779.485 kb on - strand at 779.485 kb on - strand at 779.516 kb on + strand at 779.569 kb on + strand at 779.614 kb on + strand, within Echvi_0691 at 779.615 kb on - strand, within Echvi_0691 at 779.624 kb on - strand, within Echvi_0691 at 779.624 kb on - strand, within Echvi_0691 at 779.624 kb on - strand, within Echvi_0691 at 779.626 kb on - strand, within Echvi_0691 at 779.626 kb on - strand, within Echvi_0691 at 779.626 kb on - strand, within Echvi_0691 at 779.626 kb on - strand, within Echvi_0691 at 779.667 kb on + strand, within Echvi_0691 at 779.668 kb on - strand, within Echvi_0691 at 779.678 kb on - strand, within Echvi_0691 at 779.680 kb on - strand, within Echvi_0691 at 779.691 kb on + strand, within Echvi_0691 at 779.691 kb on + strand, within Echvi_0691 at 779.692 kb on - strand, within Echvi_0691 at 779.694 kb on + strand, within Echvi_0691 at 779.695 kb on - strand, within Echvi_0691 at 779.695 kb on - strand, within Echvi_0691 at 779.695 kb on - strand, within Echvi_0691 at 779.756 kb on - strand, within Echvi_0691 at 779.775 kb on + strand, within Echvi_0691 at 779.775 kb on + strand, within Echvi_0691 at 779.776 kb on - strand, within Echvi_0691 at 779.824 kb on - strand, within Echvi_0691 at 779.856 kb on - strand, within Echvi_0691 at 779.892 kb on + strand, within Echvi_0691 at 779.892 kb on + strand, within Echvi_0691 at 779.892 kb on + strand, within Echvi_0691 at 779.999 kb on - strand, within Echvi_0691 at 780.048 kb on + strand, within Echvi_0691 at 780.048 kb on + strand, within Echvi_0691 at 780.049 kb on - strand, within Echvi_0691 at 780.057 kb on - strand, within Echvi_0691 at 780.057 kb on - strand, within Echvi_0691 at 780.095 kb on - strand, within Echvi_0691 at 780.100 kb on + strand, within Echvi_0691 at 780.100 kb on + strand, within Echvi_0691 at 780.100 kb on + strand, within Echvi_0691 at 780.101 kb on - strand, within Echvi_0691 at 780.101 kb on - strand, within Echvi_0691 at 780.103 kb on - strand, within Echvi_0691 at 780.103 kb on - strand, within Echvi_0691 at 780.103 kb on - strand, within Echvi_0691 at 780.166 kb on - strand, within Echvi_0691 at 780.185 kb on + strand, within Echvi_0691 at 780.185 kb on + strand, within Echvi_0691 at 780.193 kb on + strand, within Echvi_0691 at 780.193 kb on + strand, within Echvi_0691 at 780.236 kb on + strand, within Echvi_0691
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 777,910 + Echvi_0688 0.55 +0.2 777,910 + Echvi_0688 0.55 +1.8 777,956 - Echvi_0688 0.65 -1.0 778,101 - -0.4 778,108 - -1.1 778,111 + -0.5 778,112 - +0.3 778,117 + +0.0 778,117 + -0.9 778,118 - -0.4 778,139 + -1.0 778,150 - +0.4 778,196 + +0.1 778,322 + +0.2 778,346 + -0.4 778,346 + -0.3 778,416 + +0.2 778,460 - +1.6 778,464 - -2.3 778,535 - -1.8 778,535 - -1.1 778,536 + +1.4 778,536 + -1.4 778,537 - +0.6 778,537 - -0.7 778,566 + -0.5 778,566 + -0.6 778,566 + +0.5 778,568 + +1.2 778,569 - +0.5 778,569 - -0.1 778,569 - -1.1 778,569 - -0.9 778,570 + -0.7 778,570 + -0.7 778,570 + -0.4 778,570 + +0.5 778,571 - -1.1 778,571 - -0.4 778,571 - +0.1 778,592 + +0.3 778,593 - -0.2 778,593 - -2.1 778,593 - +0.1 778,593 - +0.7 778,594 + +0.7 778,594 + +0.6 778,594 + +1.3 778,594 + -1.1 778,594 + -1.3 778,594 + +1.0 778,595 - +1.1 778,595 - -0.2 778,627 + -1.0 778,627 + -1.3 778,628 - +1.1 778,628 - -1.1 778,633 + -1.0 778,651 + +0.4 778,652 - +2.0 778,660 - -0.2 778,660 - +0.7 778,691 + -0.4 778,722 + -1.3 778,723 - -2.0 778,724 + +0.2 778,724 + -1.0 778,725 - -0.2 778,732 + +1.8 778,747 + -0.2 778,747 + +0.5 778,753 + -1.4 778,754 - -0.7 778,754 - +1.4 778,788 - +1.3 778,805 + -0.0 778,900 + -0.2 778,900 + -1.2 778,953 - Echvi_0690 0.14 -0.6 778,956 - Echvi_0690 0.15 -0.2 778,978 + Echvi_0690 0.21 -2.0 778,978 + Echvi_0690 0.21 -0.8 779,051 + Echvi_0690 0.41 -1.1 779,052 - Echvi_0690 0.41 +0.8 779,055 + Echvi_0690 0.42 -0.7 779,055 + Echvi_0690 0.42 -2.2 779,056 - Echvi_0690 0.42 -0.5 779,084 + Echvi_0690 0.49 -1.4 779,085 - Echvi_0690 0.50 +0.6 779,085 - Echvi_0690 0.50 -1.1 779,088 - Echvi_0690 0.50 +0.3 779,131 - Echvi_0690 0.62 +2.0 779,161 + Echvi_0690 0.70 -0.5 779,194 + Echvi_0690 0.79 -0.5 779,195 - Echvi_0690 0.79 -0.4 779,277 + -0.6 779,278 - +0.6 779,278 - -0.4 779,297 + -1.9 779,297 + +1.0 779,350 + -0.0 779,351 - +1.2 779,359 + -1.4 779,359 + -1.1 779,395 - -1.5 779,395 - -2.5 779,430 + -2.1 779,430 + +1.1 779,431 - +1.4 779,457 + +0.6 779,473 + -0.6 779,484 + +0.1 779,485 - -0.6 779,485 - -3.3 779,516 + -0.8 779,569 + -0.9 779,614 + Echvi_0691 0.10 -1.0 779,615 - Echvi_0691 0.10 -0.2 779,624 - Echvi_0691 0.11 -0.9 779,624 - Echvi_0691 0.11 -1.8 779,624 - Echvi_0691 0.11 -1.7 779,626 - Echvi_0691 0.11 -0.4 779,626 - Echvi_0691 0.11 +0.9 779,626 - Echvi_0691 0.11 -1.4 779,626 - Echvi_0691 0.11 -1.9 779,667 + Echvi_0691 0.13 +0.4 779,668 - Echvi_0691 0.13 -0.7 779,678 - Echvi_0691 0.13 -0.9 779,680 - Echvi_0691 0.13 -0.3 779,691 + Echvi_0691 0.14 -1.6 779,691 + Echvi_0691 0.14 +0.7 779,692 - Echvi_0691 0.14 -2.3 779,694 + Echvi_0691 0.14 -0.6 779,695 - Echvi_0691 0.14 +0.6 779,695 - Echvi_0691 0.14 -1.9 779,695 - Echvi_0691 0.14 +0.7 779,756 - Echvi_0691 0.17 -0.4 779,775 + Echvi_0691 0.18 +1.0 779,775 + Echvi_0691 0.18 -1.3 779,776 - Echvi_0691 0.18 -1.5 779,824 - Echvi_0691 0.20 +0.4 779,856 - Echvi_0691 0.21 +0.5 779,892 + Echvi_0691 0.23 -0.0 779,892 + Echvi_0691 0.23 -2.5 779,892 + Echvi_0691 0.23 +0.1 779,999 - Echvi_0691 0.28 -2.8 780,048 + Echvi_0691 0.30 -0.0 780,048 + Echvi_0691 0.30 +2.8 780,049 - Echvi_0691 0.30 -1.0 780,057 - Echvi_0691 0.30 -0.3 780,057 - Echvi_0691 0.30 -0.8 780,095 - Echvi_0691 0.32 -2.3 780,100 + Echvi_0691 0.32 -0.8 780,100 + Echvi_0691 0.32 +0.7 780,100 + Echvi_0691 0.32 -0.4 780,101 - Echvi_0691 0.33 -0.8 780,101 - Echvi_0691 0.33 -2.0 780,103 - Echvi_0691 0.33 -0.9 780,103 - Echvi_0691 0.33 -1.5 780,103 - Echvi_0691 0.33 +0.3 780,166 - Echvi_0691 0.35 +1.7 780,185 + Echvi_0691 0.36 -0.5 780,185 + Echvi_0691 0.36 -0.5 780,193 + Echvi_0691 0.37 +0.4 780,193 + Echvi_0691 0.37 -0.5 780,236 + Echvi_0691 0.39 -2.3
Or see this region's nucleotide sequence