Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0588

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0587 and Echvi_0588 overlap by 4 nucleotidesEchvi_0588 and Echvi_0589 are separated by 76 nucleotides Echvi_0587: Echvi_0587 - ABC-type Na+ efflux pump, permease component, at 664,823 to 666,133 _0587 Echvi_0588: Echvi_0588 - ABC-type uncharacterized transport system, ATPase component, at 666,130 to 667,029 _0588 Echvi_0589: Echvi_0589 - hypothetical protein, at 667,106 to 667,942 _0589 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 665.190 kb on + strand, within Echvi_0587at 665.506 kb on + strand, within Echvi_0587at 665.545 kb on + strand, within Echvi_0587at 665.550 kb on + strand, within Echvi_0587at 665.551 kb on - strand, within Echvi_0587at 665.568 kb on + strand, within Echvi_0587at 665.568 kb on + strand, within Echvi_0587at 665.569 kb on - strand, within Echvi_0587at 665.680 kb on + strand, within Echvi_0587at 665.732 kb on + strand, within Echvi_0587at 665.734 kb on + strand, within Echvi_0587at 665.734 kb on + strand, within Echvi_0587at 665.735 kb on - strand, within Echvi_0587at 665.735 kb on - strand, within Echvi_0587at 665.741 kb on - strand, within Echvi_0587at 665.822 kb on + strand, within Echvi_0587at 665.823 kb on - strand, within Echvi_0587at 665.823 kb on - strand, within Echvi_0587at 665.839 kb on + strand, within Echvi_0587at 665.839 kb on + strand, within Echvi_0587at 665.840 kb on - strand, within Echvi_0587at 665.841 kb on + strand, within Echvi_0587at 665.841 kb on + strand, within Echvi_0587at 665.841 kb on + strand, within Echvi_0587at 665.841 kb on + strandat 665.843 kb on + strand, within Echvi_0587at 665.843 kb on + strand, within Echvi_0587at 665.843 kb on + strand, within Echvi_0587at 665.843 kb on + strand, within Echvi_0587at 665.844 kb on - strand, within Echvi_0587at 665.844 kb on - strand, within Echvi_0587at 665.844 kb on - strand, within Echvi_0587at 665.908 kb on - strand, within Echvi_0587at 665.919 kb on + strand, within Echvi_0587at 665.920 kb on - strand, within Echvi_0587at 665.920 kb on - strandat 665.963 kb on + strand, within Echvi_0587at 665.964 kb on - strand, within Echvi_0587at 665.964 kb on - strand, within Echvi_0587at 666.026 kb on + strandat 666.061 kb on + strandat 666.128 kb on - strandat 666.284 kb on + strand, within Echvi_0588at 666.284 kb on + strand, within Echvi_0588at 666.343 kb on + strand, within Echvi_0588at 666.344 kb on - strand, within Echvi_0588at 666.349 kb on - strand, within Echvi_0588at 666.355 kb on - strand, within Echvi_0588at 666.429 kb on + strand, within Echvi_0588at 666.429 kb on + strand, within Echvi_0588at 666.429 kb on + strand, within Echvi_0588at 666.449 kb on - strand, within Echvi_0588at 666.468 kb on + strand, within Echvi_0588at 666.469 kb on - strand, within Echvi_0588at 666.522 kb on + strand, within Echvi_0588at 666.744 kb on - strand, within Echvi_0588at 666.744 kb on - strand, within Echvi_0588at 666.776 kb on + strand, within Echvi_0588at 666.816 kb on + strand, within Echvi_0588at 666.861 kb on + strand, within Echvi_0588at 666.861 kb on + strand, within Echvi_0588at 666.895 kb on + strand, within Echvi_0588at 666.919 kb on - strand, within Echvi_0588at 667.017 kb on + strandat 667.060 kb on + strandat 667.060 kb on + strandat 667.060 kb on + strandat 667.060 kb on + strandat 667.061 kb on - strandat 667.061 kb on - strandat 667.061 kb on - strandat 667.074 kb on - strandat 667.107 kb on + strandat 667.112 kb on + strandat 667.134 kb on - strandat 667.269 kb on + strand, within Echvi_0589at 667.297 kb on + strand, within Echvi_0589at 667.297 kb on + strand, within Echvi_0589at 667.298 kb on - strand, within Echvi_0589at 667.299 kb on + strand, within Echvi_0589at 667.302 kb on - strand, within Echvi_0589at 667.387 kb on - strand, within Echvi_0589at 667.406 kb on - strand, within Echvi_0589at 667.521 kb on - strand, within Echvi_0589at 667.532 kb on - strand, within Echvi_0589at 667.623 kb on + strand, within Echvi_0589at 667.624 kb on - strand, within Echvi_0589at 667.624 kb on - strand, within Echvi_0589at 667.624 kb on - strand, within Echvi_0589at 667.628 kb on - strand, within Echvi_0589at 667.735 kb on + strand, within Echvi_0589at 667.760 kb on - strand, within Echvi_0589at 667.770 kb on + strand, within Echvi_0589at 667.789 kb on + strand, within Echvi_0589at 667.790 kb on - strand, within Echvi_0589at 667.866 kb on + strandat 667.867 kb on - strandat 667.947 kb on - strandat 667.947 kb on - strandat 667.966 kb on + strandat 667.967 kb on - strandat 667.980 kb on - strandat 667.999 kb on + strandat 668.000 kb on - strandat 668.000 kb on - strandat 668.011 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
665,190 + Echvi_0587 0.28 +0.8
665,506 + Echvi_0587 0.52 -0.4
665,545 + Echvi_0587 0.55 -0.4
665,550 + Echvi_0587 0.55 +0.4
665,551 - Echvi_0587 0.56 -0.5
665,568 + Echvi_0587 0.57 +0.2
665,568 + Echvi_0587 0.57 +0.2
665,569 - Echvi_0587 0.57 -2.6
665,680 + Echvi_0587 0.65 -0.6
665,732 + Echvi_0587 0.69 +0.4
665,734 + Echvi_0587 0.69 +0.9
665,734 + Echvi_0587 0.69 +0.8
665,735 - Echvi_0587 0.70 -1.2
665,735 - Echvi_0587 0.70 +0.7
665,741 - Echvi_0587 0.70 -1.7
665,822 + Echvi_0587 0.76 +0.7
665,823 - Echvi_0587 0.76 +0.3
665,823 - Echvi_0587 0.76 -0.8
665,839 + Echvi_0587 0.77 +1.2
665,839 + Echvi_0587 0.77 +0.0
665,840 - Echvi_0587 0.78 -0.3
665,841 + Echvi_0587 0.78 -0.3
665,841 + Echvi_0587 0.78 +1.2
665,841 + Echvi_0587 0.78 +1.2
665,841 + +1.0
665,843 + Echvi_0587 0.78 -0.6
665,843 + Echvi_0587 0.78 +0.8
665,843 + Echvi_0587 0.78 +1.5
665,843 + Echvi_0587 0.78 +0.0
665,844 - Echvi_0587 0.78 +0.6
665,844 - Echvi_0587 0.78 +0.3
665,844 - Echvi_0587 0.78 +2.3
665,908 - Echvi_0587 0.83 +0.6
665,919 + Echvi_0587 0.84 +0.4
665,920 - Echvi_0587 0.84 -0.4
665,920 - +0.4
665,963 + Echvi_0587 0.87 +1.0
665,964 - Echvi_0587 0.87 +0.4
665,964 - Echvi_0587 0.87 +0.5
666,026 + +0.9
666,061 + -2.0
666,128 - -0.3
666,284 + Echvi_0588 0.17 +0.3
666,284 + Echvi_0588 0.17 +2.6
666,343 + Echvi_0588 0.24 -0.5
666,344 - Echvi_0588 0.24 -0.8
666,349 - Echvi_0588 0.24 +0.4
666,355 - Echvi_0588 0.25 +0.2
666,429 + Echvi_0588 0.33 -0.3
666,429 + Echvi_0588 0.33 +1.1
666,429 + Echvi_0588 0.33 +0.7
666,449 - Echvi_0588 0.35 +0.2
666,468 + Echvi_0588 0.38 +0.3
666,469 - Echvi_0588 0.38 +0.0
666,522 + Echvi_0588 0.44 -0.1
666,744 - Echvi_0588 0.68 -1.7
666,744 - Echvi_0588 0.68 +0.0
666,776 + Echvi_0588 0.72 +0.6
666,816 + Echvi_0588 0.76 +1.6
666,861 + Echvi_0588 0.81 +1.4
666,861 + Echvi_0588 0.81 +0.3
666,895 + Echvi_0588 0.85 -0.8
666,919 - Echvi_0588 0.88 +3.5
667,017 + +2.0
667,060 + +2.8
667,060 + +2.7
667,060 + +1.1
667,060 + +1.4
667,061 - -0.7
667,061 - -0.1
667,061 - +0.3
667,074 - -0.7
667,107 + +1.6
667,112 + +3.1
667,134 - +4.1
667,269 + Echvi_0589 0.19 +5.0
667,297 + Echvi_0589 0.23 +4.3
667,297 + Echvi_0589 0.23 +5.6
667,298 - Echvi_0589 0.23 +3.9
667,299 + Echvi_0589 0.23 +4.2
667,302 - Echvi_0589 0.23 +7.1
667,387 - Echvi_0589 0.34 +4.9
667,406 - Echvi_0589 0.36 +4.9
667,521 - Echvi_0589 0.50 +0.6
667,532 - Echvi_0589 0.51 +4.5
667,623 + Echvi_0589 0.62 +4.2
667,624 - Echvi_0589 0.62 +5.7
667,624 - Echvi_0589 0.62 +4.8
667,624 - Echvi_0589 0.62 +4.4
667,628 - Echvi_0589 0.62 +4.2
667,735 + Echvi_0589 0.75 +4.9
667,760 - Echvi_0589 0.78 +4.5
667,770 + Echvi_0589 0.79 +5.1
667,789 + Echvi_0589 0.82 +5.2
667,790 - Echvi_0589 0.82 +3.6
667,866 + +5.6
667,867 - +5.3
667,947 - +3.4
667,947 - +4.0
667,966 + +4.5
667,967 - +4.0
667,980 - +4.7
667,999 + +5.4
668,000 - +0.4
668,000 - +0.2
668,011 - +0.2

Or see this region's nucleotide sequence