Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0585 and Echvi_0586 are separated by 159 nucleotides Echvi_0586 and Echvi_0587 are separated by 59 nucleotides Echvi_0587 and Echvi_0588 overlap by 4 nucleotides Echvi_0588 and Echvi_0589 are separated by 76 nucleotides
Echvi_0585: Echvi_0585 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 662,895 to 664,133
_0585
Echvi_0586: Echvi_0586 - DNA-binding ferritin-like protein (oxidative damage protectant), at 664,293 to 664,763
_0586
Echvi_0587: Echvi_0587 - ABC-type Na+ efflux pump, permease component, at 664,823 to 666,133
_0587
Echvi_0588: Echvi_0588 - ABC-type uncharacterized transport system, ATPase component, at 666,130 to 667,029
_0588
Echvi_0589: Echvi_0589 - hypothetical protein, at 667,106 to 667,942
_0589
Position (kb) 664
665
666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 663.824 kb on + strand, within Echvi_0585 at 663.825 kb on - strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.946 kb on + strand, within Echvi_0585 at 663.946 kb on + strand, within Echvi_0585 at 663.947 kb on - strand, within Echvi_0585 at 663.947 kb on - strand, within Echvi_0585 at 663.965 kb on - strand, within Echvi_0585 at 663.971 kb on + strand, within Echvi_0585 at 664.014 kb on - strand at 664.014 kb on - strand at 664.019 kb on + strand at 664.019 kb on + strand at 664.019 kb on + strand at 664.020 kb on - strand at 664.021 kb on + strand at 664.021 kb on + strand at 664.022 kb on - strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.025 kb on - strand at 664.025 kb on - strand at 664.029 kb on - strand at 664.038 kb on - strand at 664.038 kb on - strand at 664.040 kb on + strand at 664.075 kb on - strand at 664.093 kb on + strand at 664.095 kb on + strand at 664.095 kb on + strand at 664.096 kb on - strand at 664.134 kb on + strand at 664.135 kb on - strand at 664.163 kb on - strand at 664.172 kb on + strand at 664.176 kb on + strand at 664.176 kb on + strand at 664.176 kb on + strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.178 kb on + strand at 664.196 kb on - strand at 664.196 kb on - strand at 664.196 kb on - strand at 664.199 kb on + strand at 664.199 kb on + strand at 664.200 kb on - strand at 664.203 kb on - strand at 664.203 kb on - strand at 664.219 kb on - strand at 664.287 kb on + strand at 664.289 kb on + strand at 664.289 kb on + strand at 664.290 kb on - strand at 664.301 kb on + strand at 664.328 kb on + strand at 664.380 kb on + strand, within Echvi_0586 at 664.384 kb on - strand, within Echvi_0586 at 664.461 kb on + strand, within Echvi_0586 at 664.509 kb on - strand, within Echvi_0586 at 664.545 kb on + strand, within Echvi_0586 at 664.545 kb on + strand, within Echvi_0586 at 664.711 kb on - strand, within Echvi_0586 at 664.711 kb on - strand, within Echvi_0586 at 664.713 kb on - strand, within Echvi_0586 at 664.757 kb on + strand at 664.758 kb on - strand at 664.758 kb on - strand at 664.819 kb on + strand at 664.819 kb on + strand at 664.824 kb on + strand at 664.824 kb on + strand at 664.860 kb on + strand at 664.888 kb on + strand at 664.901 kb on + strand at 664.901 kb on + strand at 664.902 kb on - strand at 665.021 kb on - strand, within Echvi_0587 at 665.021 kb on - strand, within Echvi_0587 at 665.080 kb on + strand, within Echvi_0587 at 665.190 kb on + strand, within Echvi_0587 at 665.506 kb on + strand, within Echvi_0587 at 665.545 kb on + strand, within Echvi_0587 at 665.550 kb on + strand, within Echvi_0587 at 665.551 kb on - strand, within Echvi_0587 at 665.568 kb on + strand, within Echvi_0587 at 665.568 kb on + strand, within Echvi_0587 at 665.569 kb on - strand, within Echvi_0587 at 665.680 kb on + strand, within Echvi_0587 at 665.732 kb on + strand, within Echvi_0587 at 665.734 kb on + strand, within Echvi_0587 at 665.734 kb on + strand, within Echvi_0587 at 665.735 kb on - strand, within Echvi_0587 at 665.735 kb on - strand, within Echvi_0587 at 665.741 kb on - strand, within Echvi_0587 at 665.822 kb on + strand, within Echvi_0587 at 665.823 kb on - strand, within Echvi_0587 at 665.823 kb on - strand, within Echvi_0587 at 665.839 kb on + strand, within Echvi_0587 at 665.839 kb on + strand, within Echvi_0587 at 665.840 kb on - strand, within Echvi_0587 at 665.841 kb on + strand, within Echvi_0587 at 665.841 kb on + strand, within Echvi_0587 at 665.841 kb on + strand, within Echvi_0587 at 665.841 kb on + strand at 665.843 kb on + strand, within Echvi_0587 at 665.843 kb on + strand, within Echvi_0587 at 665.843 kb on + strand, within Echvi_0587 at 665.843 kb on + strand, within Echvi_0587 at 665.844 kb on - strand, within Echvi_0587 at 665.844 kb on - strand, within Echvi_0587 at 665.844 kb on - strand, within Echvi_0587 at 665.908 kb on - strand, within Echvi_0587 at 665.919 kb on + strand, within Echvi_0587 at 665.920 kb on - strand, within Echvi_0587 at 665.920 kb on - strand at 665.963 kb on + strand, within Echvi_0587 at 665.964 kb on - strand, within Echvi_0587 at 665.964 kb on - strand, within Echvi_0587 at 666.026 kb on + strand at 666.061 kb on + strand at 666.128 kb on - strand at 666.284 kb on + strand, within Echvi_0588 at 666.284 kb on + strand, within Echvi_0588 at 666.343 kb on + strand, within Echvi_0588 at 666.344 kb on - strand, within Echvi_0588 at 666.349 kb on - strand, within Echvi_0588 at 666.355 kb on - strand, within Echvi_0588 at 666.429 kb on + strand, within Echvi_0588 at 666.429 kb on + strand, within Echvi_0588 at 666.429 kb on + strand, within Echvi_0588 at 666.449 kb on - strand, within Echvi_0588 at 666.468 kb on + strand, within Echvi_0588 at 666.469 kb on - strand, within Echvi_0588 at 666.522 kb on + strand, within Echvi_0588 at 666.744 kb on - strand, within Echvi_0588 at 666.744 kb on - strand, within Echvi_0588 at 666.776 kb on + strand, within Echvi_0588 at 666.816 kb on + strand, within Echvi_0588 at 666.861 kb on + strand, within Echvi_0588 at 666.861 kb on + strand, within Echvi_0588 at 666.895 kb on + strand, within Echvi_0588 at 666.919 kb on - strand, within Echvi_0588 at 667.017 kb on + strand at 667.060 kb on + strand at 667.060 kb on + strand at 667.060 kb on + strand at 667.060 kb on + strand at 667.061 kb on - strand at 667.061 kb on - strand at 667.061 kb on - strand at 667.074 kb on - strand at 667.107 kb on + strand at 667.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 663,824 + Echvi_0585 0.75 +3.3 663,825 - Echvi_0585 0.75 -0.3 663,935 + Echvi_0585 0.84 +2.9 663,935 + Echvi_0585 0.84 +3.5 663,935 + Echvi_0585 0.84 +2.7 663,946 + Echvi_0585 0.85 +4.1 663,946 + Echvi_0585 0.85 +3.2 663,947 - Echvi_0585 0.85 +2.5 663,947 - Echvi_0585 0.85 +0.4 663,965 - Echvi_0585 0.86 -0.2 663,971 + Echvi_0585 0.87 +2.8 664,014 - -0.6 664,014 - +0.4 664,019 + +3.0 664,019 + +3.2 664,019 + +2.2 664,020 - -1.0 664,021 + +3.7 664,021 + +3.4 664,022 - +0.2 664,024 + +3.0 664,024 + +2.4 664,024 + +2.9 664,024 + +3.3 664,025 - +1.0 664,025 - -3.2 664,029 - +0.3 664,038 - +0.2 664,038 - -1.5 664,040 + +2.4 664,075 - -1.3 664,093 + +2.6 664,095 + +3.2 664,095 + +3.3 664,096 - -0.5 664,134 + +2.9 664,135 - -0.8 664,163 - +2.1 664,172 + +3.8 664,176 + +3.3 664,176 + +3.4 664,176 + +2.8 664,177 - +0.2 664,177 - +1.0 664,177 - -0.0 664,177 - -0.8 664,177 - +0.6 664,178 + +2.3 664,196 - +0.1 664,196 - +0.7 664,196 - +0.8 664,199 + +2.7 664,199 + +2.4 664,200 - +0.4 664,203 - -1.1 664,203 - -0.4 664,219 - -0.6 664,287 + -2.8 664,289 + -1.0 664,289 + -1.9 664,290 - -1.5 664,301 + -1.6 664,328 + -0.0 664,380 + Echvi_0586 0.18 -2.2 664,384 - Echvi_0586 0.19 -1.1 664,461 + Echvi_0586 0.36 -2.1 664,509 - Echvi_0586 0.46 -1.4 664,545 + Echvi_0586 0.54 -1.8 664,545 + Echvi_0586 0.54 -0.8 664,711 - Echvi_0586 0.89 -3.3 664,711 - Echvi_0586 0.89 -3.6 664,713 - Echvi_0586 0.89 -1.3 664,757 + -2.1 664,758 - -2.5 664,758 - -0.4 664,819 + -0.7 664,819 + +0.5 664,824 + +0.1 664,824 + -1.3 664,860 + +1.6 664,888 + +0.5 664,901 + -1.8 664,901 + -0.8 664,902 - -0.2 665,021 - Echvi_0587 0.15 -3.5 665,021 - Echvi_0587 0.15 -0.8 665,080 + Echvi_0587 0.20 -0.2 665,190 + Echvi_0587 0.28 +0.8 665,506 + Echvi_0587 0.52 -0.4 665,545 + Echvi_0587 0.55 -0.4 665,550 + Echvi_0587 0.55 +0.4 665,551 - Echvi_0587 0.56 -0.5 665,568 + Echvi_0587 0.57 +0.2 665,568 + Echvi_0587 0.57 +0.2 665,569 - Echvi_0587 0.57 -2.6 665,680 + Echvi_0587 0.65 -0.6 665,732 + Echvi_0587 0.69 +0.4 665,734 + Echvi_0587 0.69 +0.9 665,734 + Echvi_0587 0.69 +0.8 665,735 - Echvi_0587 0.70 -1.2 665,735 - Echvi_0587 0.70 +0.7 665,741 - Echvi_0587 0.70 -1.7 665,822 + Echvi_0587 0.76 +0.7 665,823 - Echvi_0587 0.76 +0.3 665,823 - Echvi_0587 0.76 -0.8 665,839 + Echvi_0587 0.77 +1.2 665,839 + Echvi_0587 0.77 +0.0 665,840 - Echvi_0587 0.78 -0.3 665,841 + Echvi_0587 0.78 -0.3 665,841 + Echvi_0587 0.78 +1.2 665,841 + Echvi_0587 0.78 +1.2 665,841 + +1.0 665,843 + Echvi_0587 0.78 -0.6 665,843 + Echvi_0587 0.78 +0.8 665,843 + Echvi_0587 0.78 +1.5 665,843 + Echvi_0587 0.78 +0.0 665,844 - Echvi_0587 0.78 +0.6 665,844 - Echvi_0587 0.78 +0.3 665,844 - Echvi_0587 0.78 +2.3 665,908 - Echvi_0587 0.83 +0.6 665,919 + Echvi_0587 0.84 +0.4 665,920 - Echvi_0587 0.84 -0.4 665,920 - +0.4 665,963 + Echvi_0587 0.87 +1.0 665,964 - Echvi_0587 0.87 +0.4 665,964 - Echvi_0587 0.87 +0.5 666,026 + +0.9 666,061 + -2.0 666,128 - -0.3 666,284 + Echvi_0588 0.17 +0.3 666,284 + Echvi_0588 0.17 +2.6 666,343 + Echvi_0588 0.24 -0.5 666,344 - Echvi_0588 0.24 -0.8 666,349 - Echvi_0588 0.24 +0.4 666,355 - Echvi_0588 0.25 +0.2 666,429 + Echvi_0588 0.33 -0.3 666,429 + Echvi_0588 0.33 +1.1 666,429 + Echvi_0588 0.33 +0.7 666,449 - Echvi_0588 0.35 +0.2 666,468 + Echvi_0588 0.38 +0.3 666,469 - Echvi_0588 0.38 +0.0 666,522 + Echvi_0588 0.44 -0.1 666,744 - Echvi_0588 0.68 -1.7 666,744 - Echvi_0588 0.68 +0.0 666,776 + Echvi_0588 0.72 +0.6 666,816 + Echvi_0588 0.76 +1.6 666,861 + Echvi_0588 0.81 +1.4 666,861 + Echvi_0588 0.81 +0.3 666,895 + Echvi_0588 0.85 -0.8 666,919 - Echvi_0588 0.88 +3.5 667,017 + +2.0 667,060 + +2.8 667,060 + +2.7 667,060 + +1.1 667,060 + +1.4 667,061 - -0.7 667,061 - -0.1 667,061 - +0.3 667,074 - -0.7 667,107 + +1.6 667,112 + +3.1
Or see this region's nucleotide sequence