Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0574 and Echvi_0575 are separated by 52 nucleotides Echvi_0575 and Echvi_0576 are separated by 31 nucleotides Echvi_0576 and Echvi_0577 are separated by 263 nucleotides Echvi_0577 and Echvi_0578 are separated by 304 nucleotides
Echvi_0574: Echvi_0574 - hypothetical protein, at 652,641 to 652,793
_0574
Echvi_0575: Echvi_0575 - ribosomal protein L33, bacterial type, at 652,846 to 653,028
_0575
Echvi_0576: Echvi_0576 - ribosomal protein L28, at 653,060 to 653,302
_0576
Echvi_0577: Echvi_0577 - Ornithine aminotransferase (EC 2.6.1.13) <small>(from data)</small>, at 653,566 to 654,807
_0577
Echvi_0578: Echvi_0578 - Delta-aminolevulinic acid dehydratase, at 655,112 to 656,080
_0578
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.568 kb on - strand at 652.568 kb on - strand at 653.406 kb on - strand at 653.474 kb on + strand at 653.474 kb on + strand at 653.475 kb on - strand at 653.475 kb on - strand at 653.475 kb on - strand at 653.475 kb on - strand at 653.520 kb on - strand at 653.522 kb on - strand at 653.526 kb on + strand at 653.559 kb on + strand at 653.560 kb on - strand at 653.628 kb on + strand at 653.629 kb on - strand at 653.632 kb on + strand at 653.632 kb on + strand at 653.632 kb on + strand at 653.632 kb on + strand at 653.633 kb on - strand at 653.633 kb on - strand at 653.677 kb on - strand at 653.818 kb on - strand, within Echvi_0577 at 653.818 kb on - strand, within Echvi_0577 at 654.122 kb on + strand, within Echvi_0577 at 654.122 kb on + strand, within Echvi_0577 at 654.122 kb on + strand, within Echvi_0577 at 654.123 kb on - strand, within Echvi_0577 at 654.125 kb on + strand, within Echvi_0577 at 654.126 kb on - strand, within Echvi_0577 at 654.185 kb on + strand, within Echvi_0577 at 654.185 kb on + strand, within Echvi_0577 at 654.185 kb on + strand, within Echvi_0577 at 654.185 kb on + strand, within Echvi_0577 at 654.186 kb on - strand, within Echvi_0577 at 654.186 kb on - strand, within Echvi_0577 at 654.187 kb on + strand, within Echvi_0577 at 654.187 kb on + strand, within Echvi_0577 at 654.187 kb on + strand, within Echvi_0577 at 654.187 kb on + strand, within Echvi_0577 at 654.187 kb on + strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.188 kb on - strand, within Echvi_0577 at 654.205 kb on + strand, within Echvi_0577 at 654.210 kb on + strand, within Echvi_0577 at 654.218 kb on + strand, within Echvi_0577 at 654.218 kb on + strand, within Echvi_0577 at 654.219 kb on - strand, within Echvi_0577 at 654.245 kb on + strand, within Echvi_0577 at 654.400 kb on - strand, within Echvi_0577 at 654.551 kb on + strand, within Echvi_0577 at 654.699 kb on + strand at 654.699 kb on + strand at 654.700 kb on - strand at 654.711 kb on + strand at 654.712 kb on - strand at 654.712 kb on - strand at 654.712 kb on - strand at 654.712 kb on - strand at 654.806 kb on - strand at 654.896 kb on + strand at 654.907 kb on + strand at 654.908 kb on - strand at 654.908 kb on - strand at 654.954 kb on + strand at 654.985 kb on + strand at 655.034 kb on + strand at 655.034 kb on + strand at 655.034 kb on + strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.036 kb on + strand at 655.036 kb on + strand at 655.036 kb on + strand at 655.036 kb on + strand at 655.037 kb on - strand at 655.037 kb on - strand at 655.037 kb on - strand at 655.037 kb on - strand at 655.107 kb on + strand at 655.107 kb on + strand at 655.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 652,568 - +0.3 652,568 - -0.2 653,406 - +1.2 653,474 + +0.6 653,474 + -0.6 653,475 - -0.4 653,475 - -0.5 653,475 - +0.2 653,475 - +0.0 653,520 - -0.6 653,522 - +0.2 653,526 + -0.8 653,559 + +1.4 653,560 - +0.1 653,628 + -0.8 653,629 - +2.0 653,632 + -1.0 653,632 + -0.5 653,632 + -1.6 653,632 + -1.3 653,633 - +0.2 653,633 - +0.5 653,677 - -1.7 653,818 - Echvi_0577 0.20 -0.8 653,818 - Echvi_0577 0.20 -1.7 654,122 + Echvi_0577 0.45 +1.2 654,122 + Echvi_0577 0.45 -1.5 654,122 + Echvi_0577 0.45 -0.1 654,123 - Echvi_0577 0.45 -0.3 654,125 + Echvi_0577 0.45 -0.4 654,126 - Echvi_0577 0.45 +0.4 654,185 + Echvi_0577 0.50 -1.7 654,185 + Echvi_0577 0.50 -2.0 654,185 + Echvi_0577 0.50 -0.9 654,185 + Echvi_0577 0.50 -1.7 654,186 - Echvi_0577 0.50 +2.4 654,186 - Echvi_0577 0.50 -1.2 654,187 + Echvi_0577 0.50 +2.2 654,187 + Echvi_0577 0.50 +1.0 654,187 + Echvi_0577 0.50 -1.4 654,187 + Echvi_0577 0.50 +1.0 654,187 + Echvi_0577 0.50 -0.5 654,188 - Echvi_0577 0.50 -1.3 654,188 - Echvi_0577 0.50 +0.4 654,188 - Echvi_0577 0.50 -0.2 654,188 - Echvi_0577 0.50 -0.0 654,188 - Echvi_0577 0.50 +0.3 654,188 - Echvi_0577 0.50 +0.2 654,188 - Echvi_0577 0.50 +0.5 654,188 - Echvi_0577 0.50 -0.8 654,205 + Echvi_0577 0.51 -0.8 654,210 + Echvi_0577 0.52 +1.3 654,218 + Echvi_0577 0.52 -0.7 654,218 + Echvi_0577 0.52 -0.7 654,219 - Echvi_0577 0.53 -0.9 654,245 + Echvi_0577 0.55 -1.0 654,400 - Echvi_0577 0.67 -0.8 654,551 + Echvi_0577 0.79 +0.4 654,699 + +0.2 654,699 + +1.0 654,700 - +0.2 654,711 + -1.3 654,712 - -1.7 654,712 - -1.0 654,712 - -0.6 654,712 - -1.3 654,806 - -0.2 654,896 + -0.1 654,907 + -0.2 654,908 - +0.5 654,908 - +0.3 654,954 + +1.1 654,985 + +1.1 655,034 + -0.8 655,034 + +0.8 655,034 + -0.0 655,035 - +0.2 655,035 - +0.2 655,035 - -0.4 655,035 - +0.8 655,035 - +0.2 655,036 + -1.3 655,036 + -1.9 655,036 + +0.4 655,036 + +1.0 655,037 - +0.3 655,037 - -0.6 655,037 - +0.2 655,037 - +0.0 655,107 + +0.5 655,107 + -1.9 655,107 + +0.1
Or see this region's nucleotide sequence