Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0564

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0562 and Echvi_0563 are separated by 184 nucleotidesEchvi_0563 and Echvi_0564 are separated by 207 nucleotidesEchvi_0564 and Echvi_0565 are separated by 231 nucleotides Echvi_0562: Echvi_0562 - hypothetical protein, at 635,894 to 637,057 _0562 Echvi_0563: Echvi_0563 - hypothetical protein, at 637,242 to 637,490 _0563 Echvi_0564: Echvi_0564 - ribosomal protein S12 methylthiotransferase RimO, at 637,698 to 639,011 _0564 Echvi_0565: Echvi_0565 - Predicted dehydrogenases and related proteins, at 639,243 to 640,709 _0565 Position (kb) 637 638 639 640Strain fitness (log2 ratio) -2 -1 0 1 2at 637.049 kb on + strandat 637.108 kb on + strandat 637.109 kb on - strandat 637.128 kb on + strandat 637.129 kb on - strandat 637.129 kb on - strandat 637.129 kb on - strandat 637.188 kb on + strandat 637.188 kb on + strandat 637.189 kb on - strandat 637.211 kb on + strandat 637.211 kb on + strandat 637.258 kb on - strandat 637.317 kb on + strand, within Echvi_0563at 637.353 kb on - strand, within Echvi_0563at 637.364 kb on - strand, within Echvi_0563at 637.376 kb on - strand, within Echvi_0563at 637.388 kb on + strand, within Echvi_0563at 637.401 kb on - strand, within Echvi_0563at 637.401 kb on - strand, within Echvi_0563at 637.402 kb on + strand, within Echvi_0563at 637.402 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.413 kb on - strand, within Echvi_0563at 637.414 kb on + strand, within Echvi_0563at 637.425 kb on - strand, within Echvi_0563at 637.425 kb on - strand, within Echvi_0563at 637.440 kb on - strand, within Echvi_0563at 637.457 kb on + strand, within Echvi_0563at 637.458 kb on - strand, within Echvi_0563at 637.508 kb on + strandat 637.513 kb on + strandat 637.513 kb on + strandat 637.525 kb on + strandat 637.560 kb on - strandat 637.593 kb on - strandat 637.593 kb on - strandat 637.602 kb on - strandat 637.819 kb on - strandat 637.849 kb on + strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.907 kb on + strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.023 kb on + strand, within Echvi_0564at 638.027 kb on + strand, within Echvi_0564at 638.027 kb on + strand, within Echvi_0564at 638.028 kb on - strand, within Echvi_0564at 638.028 kb on - strand, within Echvi_0564at 638.123 kb on + strand, within Echvi_0564at 638.124 kb on - strand, within Echvi_0564at 638.129 kb on + strand, within Echvi_0564at 638.139 kb on - strand, within Echvi_0564at 638.168 kb on + strand, within Echvi_0564at 638.169 kb on - strand, within Echvi_0564at 638.169 kb on - strand, within Echvi_0564at 638.246 kb on + strand, within Echvi_0564at 638.247 kb on - strand, within Echvi_0564at 638.259 kb on - strand, within Echvi_0564at 638.312 kb on + strand, within Echvi_0564at 638.324 kb on - strand, within Echvi_0564at 638.324 kb on - strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.587 kb on + strand, within Echvi_0564at 638.587 kb on + strand, within Echvi_0564at 638.633 kb on + strand, within Echvi_0564at 638.633 kb on + strand, within Echvi_0564at 638.633 kb on + strand, within Echvi_0564at 638.634 kb on - strand, within Echvi_0564at 638.634 kb on - strand, within Echvi_0564at 638.658 kb on + strand, within Echvi_0564at 638.659 kb on - strand, within Echvi_0564at 638.728 kb on + strand, within Echvi_0564at 638.729 kb on - strand, within Echvi_0564at 638.755 kb on + strand, within Echvi_0564at 638.811 kb on + strand, within Echvi_0564at 638.812 kb on - strand, within Echvi_0564at 638.812 kb on - strand, within Echvi_0564at 638.812 kb on - strand, within Echvi_0564at 638.850 kb on - strand, within Echvi_0564at 638.858 kb on + strand, within Echvi_0564at 638.858 kb on + strand, within Echvi_0564at 638.859 kb on - strandat 638.867 kb on + strand, within Echvi_0564at 638.870 kb on + strand, within Echvi_0564at 638.870 kb on + strand, within Echvi_0564at 638.979 kb on + strandat 638.980 kb on - strandat 638.980 kb on - strandat 639.044 kb on + strandat 639.061 kb on + strandat 639.063 kb on + strandat 639.064 kb on - strandat 639.064 kb on - strandat 639.094 kb on + strandat 639.126 kb on + strandat 639.126 kb on + strandat 639.233 kb on + strandat 639.233 kb on + strandat 639.234 kb on - strandat 639.235 kb on + strandat 639.235 kb on + strandat 639.277 kb on - strandat 639.281 kb on - strandat 639.353 kb on - strandat 639.353 kb on - strandat 639.372 kb on - strandat 639.372 kb on - strandat 639.390 kb on - strand, within Echvi_0565at 639.391 kb on + strand, within Echvi_0565at 639.392 kb on - strand, within Echvi_0565at 639.418 kb on - strand, within Echvi_0565at 639.497 kb on + strand, within Echvi_0565at 639.591 kb on + strand, within Echvi_0565at 639.591 kb on + strand, within Echvi_0565at 639.591 kb on + strand, within Echvi_0565at 639.592 kb on - strand, within Echvi_0565at 639.592 kb on - strand, within Echvi_0565at 639.611 kb on + strand, within Echvi_0565at 639.612 kb on - strand, within Echvi_0565at 639.615 kb on - strand, within Echvi_0565at 639.710 kb on + strand, within Echvi_0565at 639.710 kb on + strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.767 kb on + strand, within Echvi_0565at 639.801 kb on - strand, within Echvi_0565at 639.856 kb on + strand, within Echvi_0565at 639.857 kb on - strand, within Echvi_0565at 639.857 kb on - strand, within Echvi_0565at 639.872 kb on + strand, within Echvi_0565at 639.908 kb on + strand, within Echvi_0565at 639.918 kb on + strand, within Echvi_0565at 639.918 kb on + strand, within Echvi_0565at 639.918 kb on + strand, within Echvi_0565at 639.919 kb on - strand, within Echvi_0565at 639.919 kb on - strand, within Echvi_0565at 639.919 kb on - strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.940 kb on - strand, within Echvi_0565at 639.940 kb on - strand, within Echvi_0565at 639.940 kb on - strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.997 kb on - strand, within Echvi_0565at 639.997 kb on - strand, within Echvi_0565at 640.009 kb on + strand, within Echvi_0565

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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637,049 + -0.4
637,108 + -2.0
637,109 - +0.1
637,128 + +0.6
637,129 - -1.9
637,129 - +0.4
637,129 - -0.5
637,188 + -0.5
637,188 + -0.9
637,189 - -1.9
637,211 + +0.5
637,211 + -1.4
637,258 - +0.1
637,317 + Echvi_0563 0.30 +0.1
637,353 - Echvi_0563 0.45 +2.0
637,364 - Echvi_0563 0.49 +0.8
637,376 - Echvi_0563 0.54 +1.4
637,388 + Echvi_0563 0.59 -0.2
637,401 - Echvi_0563 0.64 +0.0
637,401 - Echvi_0563 0.64 -0.7
637,402 + Echvi_0563 0.64 +0.4
637,402 + Echvi_0563 0.64 +1.0
637,412 + Echvi_0563 0.68 +1.5
637,412 + Echvi_0563 0.68 -0.6
637,412 + Echvi_0563 0.68 -0.4
637,412 + Echvi_0563 0.68 -0.2
637,413 - Echvi_0563 0.69 +0.4
637,414 + Echvi_0563 0.69 -1.9
637,425 - Echvi_0563 0.73 +0.1
637,425 - Echvi_0563 0.73 +0.4
637,440 - Echvi_0563 0.80 -0.2
637,457 + Echvi_0563 0.86 +0.8
637,458 - Echvi_0563 0.87 +0.5
637,508 + -0.0
637,513 + +0.4
637,513 + +0.4
637,525 + +0.2
637,560 - +0.1
637,593 - +2.5
637,593 - -1.0
637,602 - +0.4
637,819 - -0.2
637,849 + Echvi_0564 0.11 -0.9
637,850 - Echvi_0564 0.12 +0.3
637,850 - Echvi_0564 0.12 -0.9
637,850 - Echvi_0564 0.12 +0.6
637,907 + Echvi_0564 0.16 +0.2
637,995 - Echvi_0564 0.23 -1.5
637,995 - Echvi_0564 0.23 -0.1
637,995 - Echvi_0564 0.23 -0.1
638,006 + Echvi_0564 0.23 -1.0
638,006 + Echvi_0564 0.23 +1.0
638,006 + Echvi_0564 0.23 +0.8
638,006 + Echvi_0564 0.23 +0.1
638,006 + Echvi_0564 0.23 -1.4
638,007 - Echvi_0564 0.24 +2.0
638,007 - Echvi_0564 0.24 +0.4
638,007 - Echvi_0564 0.24 -0.4
638,007 - Echvi_0564 0.24 -2.4
638,007 - Echvi_0564 0.24 -0.2
638,023 + Echvi_0564 0.25 -0.0
638,027 + Echvi_0564 0.25 +0.7
638,027 + Echvi_0564 0.25 +0.0
638,028 - Echvi_0564 0.25 -1.0
638,028 - Echvi_0564 0.25 -0.3
638,123 + Echvi_0564 0.32 -0.3
638,124 - Echvi_0564 0.32 -1.2
638,129 + Echvi_0564 0.33 +1.2
638,139 - Echvi_0564 0.34 -1.5
638,168 + Echvi_0564 0.36 +0.4
638,169 - Echvi_0564 0.36 -0.2
638,169 - Echvi_0564 0.36 -2.0
638,246 + Echvi_0564 0.42 -1.3
638,247 - Echvi_0564 0.42 -0.4
638,259 - Echvi_0564 0.43 +2.0
638,312 + Echvi_0564 0.47 +1.0
638,324 - Echvi_0564 0.48 -1.9
638,324 - Echvi_0564 0.48 -1.4
638,416 + Echvi_0564 0.55 +1.1
638,416 + Echvi_0564 0.55 -2.6
638,416 + Echvi_0564 0.55 +0.3
638,581 + Echvi_0564 0.67 -0.2
638,581 + Echvi_0564 0.67 -2.4
638,581 + Echvi_0564 0.67 -1.1
638,581 + Echvi_0564 0.67 +2.0
638,581 + Echvi_0564 0.67 -0.7
638,581 + Echvi_0564 0.67 -2.3
638,581 + Echvi_0564 0.67 +1.0
638,581 + Echvi_0564 0.67 -1.0
638,582 - Echvi_0564 0.67 -1.2
638,582 - Echvi_0564 0.67 -1.2
638,582 - Echvi_0564 0.67 -0.2
638,582 - Echvi_0564 0.67 +0.1
638,582 - Echvi_0564 0.67 +0.2
638,582 - Echvi_0564 0.67 +0.3
638,582 - Echvi_0564 0.67 -0.4
638,582 - Echvi_0564 0.67 -1.6
638,582 - Echvi_0564 0.67 -1.7
638,582 - Echvi_0564 0.67 -1.8
638,582 - Echvi_0564 0.67 -0.3
638,587 + Echvi_0564 0.68 -1.5
638,587 + Echvi_0564 0.68 -2.4
638,633 + Echvi_0564 0.71 -0.7
638,633 + Echvi_0564 0.71 +1.0
638,633 + Echvi_0564 0.71 +0.2
638,634 - Echvi_0564 0.71 +0.2
638,634 - Echvi_0564 0.71 -0.1
638,658 + Echvi_0564 0.73 -1.6
638,659 - Echvi_0564 0.73 -0.1
638,728 + Echvi_0564 0.78 +0.2
638,729 - Echvi_0564 0.78 -0.3
638,755 + Echvi_0564 0.80 -0.4
638,811 + Echvi_0564 0.85 -0.4
638,812 - Echvi_0564 0.85 -0.3
638,812 - Echvi_0564 0.85 -0.6
638,812 - Echvi_0564 0.85 -0.6
638,850 - Echvi_0564 0.88 -0.4
638,858 + Echvi_0564 0.88 -1.0
638,858 + Echvi_0564 0.88 -2.1
638,859 - +0.4
638,867 + Echvi_0564 0.89 +2.0
638,870 + Echvi_0564 0.89 +0.1
638,870 + Echvi_0564 0.89 -0.1
638,979 + -0.4
638,980 - -0.4
638,980 - -0.0
639,044 + -1.5
639,061 + -1.2
639,063 + +1.0
639,064 - -1.6
639,064 - +1.0
639,094 + -0.4
639,126 + +1.4
639,126 + +0.6
639,233 + -1.2
639,233 + -1.4
639,234 - +0.0
639,235 + -1.2
639,235 + +1.5
639,277 - +0.1
639,281 - +0.1
639,353 - +1.5
639,353 - -0.2
639,372 - -1.4
639,372 - +0.7
639,390 - Echvi_0565 0.10 -0.9
639,391 + Echvi_0565 0.10 -0.2
639,392 - Echvi_0565 0.10 -0.7
639,418 - Echvi_0565 0.12 -1.7
639,497 + Echvi_0565 0.17 -0.3
639,591 + Echvi_0565 0.24 +0.3
639,591 + Echvi_0565 0.24 -1.2
639,591 + Echvi_0565 0.24 -0.9
639,592 - Echvi_0565 0.24 +0.5
639,592 - Echvi_0565 0.24 +1.0
639,611 + Echvi_0565 0.25 +0.8
639,612 - Echvi_0565 0.25 -0.0
639,615 - Echvi_0565 0.25 -1.2
639,710 + Echvi_0565 0.32 -2.0
639,710 + Echvi_0565 0.32 -0.9
639,711 - Echvi_0565 0.32 +2.0
639,711 - Echvi_0565 0.32 -0.2
639,711 - Echvi_0565 0.32 +0.7
639,711 - Echvi_0565 0.32 -0.2
639,767 + Echvi_0565 0.36 -0.0
639,801 - Echvi_0565 0.38 +2.1
639,856 + Echvi_0565 0.42 -0.0
639,857 - Echvi_0565 0.42 -2.4
639,857 - Echvi_0565 0.42 -0.4
639,872 + Echvi_0565 0.43 -0.9
639,908 + Echvi_0565 0.45 -0.5
639,918 + Echvi_0565 0.46 +0.5
639,918 + Echvi_0565 0.46 -0.9
639,918 + Echvi_0565 0.46 +0.5
639,919 - Echvi_0565 0.46 -0.3
639,919 - Echvi_0565 0.46 -0.3
639,919 - Echvi_0565 0.46 -0.1
639,939 + Echvi_0565 0.47 -2.4
639,939 + Echvi_0565 0.47 -1.8
639,939 + Echvi_0565 0.47 +1.0
639,939 + Echvi_0565 0.47 -2.6
639,939 + Echvi_0565 0.47 +0.5
639,939 + Echvi_0565 0.47 +0.3
639,940 - Echvi_0565 0.48 -0.3
639,940 - Echvi_0565 0.48 -1.5
639,940 - Echvi_0565 0.48 -1.5
639,996 + Echvi_0565 0.51 +0.1
639,996 + Echvi_0565 0.51 -1.0
639,996 + Echvi_0565 0.51 -1.5
639,996 + Echvi_0565 0.51 -0.5
639,996 + Echvi_0565 0.51 +0.1
639,997 - Echvi_0565 0.51 -0.4
639,997 - Echvi_0565 0.51 -0.6
640,009 + Echvi_0565 0.52 -1.0

Or see this region's nucleotide sequence