Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0513 and Echvi_0514 are separated by 55 nucleotides Echvi_0514 and Echvi_0515 are separated by 79 nucleotides Echvi_0515 and Echvi_0516 are separated by 130 nucleotides
Echvi_0513: Echvi_0513 - Small-conductance mechanosensitive channel, at 573,949 to 574,845
_0513
Echvi_0514: Echvi_0514 - Uncharacterized membrane protein, at 574,901 to 575,617
_0514
Echvi_0515: Echvi_0515 - Ribulokinase (EC 2.7.1.16) <small>(from data)</small>, at 575,697 to 577,385
_0515
Echvi_0516: Echvi_0516 - Alpha-L-arabinofuranosidase, at 577,516 to 579,066
_0516
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 574.774 kb on - strand at 574.775 kb on + strand at 574.775 kb on + strand at 574.775 kb on + strand at 574.776 kb on - strand at 574.792 kb on + strand at 574.915 kb on + strand at 574.947 kb on - strand at 575.045 kb on - strand, within Echvi_0514 at 575.094 kb on + strand, within Echvi_0514 at 575.102 kb on + strand, within Echvi_0514 at 575.102 kb on + strand, within Echvi_0514 at 575.103 kb on - strand, within Echvi_0514 at 575.106 kb on + strand, within Echvi_0514 at 575.107 kb on - strand, within Echvi_0514 at 575.107 kb on - strand, within Echvi_0514 at 575.107 kb on - strand, within Echvi_0514 at 575.132 kb on + strand, within Echvi_0514 at 575.133 kb on - strand, within Echvi_0514 at 575.136 kb on - strand, within Echvi_0514 at 575.136 kb on - strand, within Echvi_0514 at 575.238 kb on + strand, within Echvi_0514 at 575.238 kb on + strand, within Echvi_0514 at 575.239 kb on - strand, within Echvi_0514 at 575.361 kb on - strand, within Echvi_0514 at 575.361 kb on - strand, within Echvi_0514 at 575.374 kb on - strand, within Echvi_0514 at 575.402 kb on + strand, within Echvi_0514 at 575.402 kb on + strand, within Echvi_0514 at 575.437 kb on + strand, within Echvi_0514 at 575.455 kb on + strand, within Echvi_0514 at 575.477 kb on - strand, within Echvi_0514 at 575.493 kb on + strand, within Echvi_0514 at 575.521 kb on - strand, within Echvi_0514 at 575.580 kb on - strand at 575.580 kb on - strand at 575.593 kb on - strand at 575.616 kb on - strand at 575.755 kb on + strand at 575.756 kb on - strand at 575.765 kb on - strand at 575.766 kb on + strand at 575.766 kb on + strand at 575.766 kb on + strand at 575.767 kb on - strand at 575.767 kb on - strand at 575.775 kb on - strand at 575.775 kb on - strand at 575.776 kb on + strand at 575.776 kb on + strand at 575.777 kb on - strand at 575.884 kb on + strand, within Echvi_0515 at 575.884 kb on + strand, within Echvi_0515 at 575.884 kb on + strand, within Echvi_0515 at 575.884 kb on + strand, within Echvi_0515 at 575.884 kb on + strand, within Echvi_0515 at 575.884 kb on + strand, within Echvi_0515 at 575.884 kb on + strand, within Echvi_0515 at 576.317 kb on + strand, within Echvi_0515 at 576.363 kb on + strand, within Echvi_0515 at 576.363 kb on + strand, within Echvi_0515 at 576.364 kb on - strand, within Echvi_0515 at 576.510 kb on + strand, within Echvi_0515 at 576.546 kb on + strand, within Echvi_0515 at 576.671 kb on - strand, within Echvi_0515 at 576.765 kb on - strand, within Echvi_0515 at 576.931 kb on + strand, within Echvi_0515 at 576.931 kb on + strand, within Echvi_0515 at 576.932 kb on - strand, within Echvi_0515 at 576.946 kb on + strand, within Echvi_0515 at 576.955 kb on + strand, within Echvi_0515 at 576.955 kb on + strand, within Echvi_0515 at 577.230 kb on - strand at 577.329 kb on + strand at 577.354 kb on + strand at 577.359 kb on + strand at 577.428 kb on - strand at 577.430 kb on + strand at 577.431 kb on - strand at 577.486 kb on + strand at 577.486 kb on + strand at 577.486 kb on + strand at 577.486 kb on + strand at 577.486 kb on + strand at 577.486 kb on + strand at 577.487 kb on - strand at 577.487 kb on - strand at 577.512 kb on + strand at 577.512 kb on + strand at 577.517 kb on + strand at 577.531 kb on + strand at 577.534 kb on + strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.565 kb on - strand at 577.565 kb on - strand at 577.609 kb on + strand at 577.610 kb on - strand at 577.706 kb on - strand, within Echvi_0516 at 577.895 kb on + strand, within Echvi_0516 at 577.895 kb on + strand, within Echvi_0516 at 577.899 kb on + strand, within Echvi_0516 at 577.918 kb on - strand, within Echvi_0516 at 578.076 kb on + strand, within Echvi_0516 at 578.119 kb on - strand, within Echvi_0516 at 578.144 kb on + strand, within Echvi_0516 at 578.144 kb on + strand, within Echvi_0516 at 578.144 kb on + strand, within Echvi_0516 at 578.145 kb on - strand, within Echvi_0516 at 578.145 kb on - strand, within Echvi_0516 at 578.274 kb on + strand, within Echvi_0516 at 578.275 kb on - strand, within Echvi_0516 at 578.276 kb on + strand, within Echvi_0516 at 578.276 kb on + strand, within Echvi_0516 at 578.276 kb on + strand, within Echvi_0516 at 578.277 kb on - strand, within Echvi_0516 at 578.277 kb on - strand, within Echvi_0516 at 578.279 kb on + strand, within Echvi_0516 at 578.279 kb on + strand, within Echvi_0516 at 578.279 kb on + strand, within Echvi_0516 at 578.280 kb on - strand, within Echvi_0516
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 574,774 - -0.2 574,775 + +0.1 574,775 + +0.5 574,775 + +0.7 574,776 - +1.0 574,792 + -1.9 574,915 + +0.6 574,947 - -1.1 575,045 - Echvi_0514 0.20 +0.9 575,094 + Echvi_0514 0.27 -0.9 575,102 + Echvi_0514 0.28 -0.3 575,102 + Echvi_0514 0.28 -0.4 575,103 - Echvi_0514 0.28 -0.6 575,106 + Echvi_0514 0.29 +1.7 575,107 - Echvi_0514 0.29 +0.1 575,107 - Echvi_0514 0.29 +0.9 575,107 - Echvi_0514 0.29 +1.3 575,132 + Echvi_0514 0.32 +1.2 575,133 - Echvi_0514 0.32 +0.5 575,136 - Echvi_0514 0.33 -0.3 575,136 - Echvi_0514 0.33 +0.3 575,238 + Echvi_0514 0.47 +0.9 575,238 + Echvi_0514 0.47 -0.4 575,239 - Echvi_0514 0.47 +1.9 575,361 - Echvi_0514 0.64 -1.2 575,361 - Echvi_0514 0.64 -1.2 575,374 - Echvi_0514 0.66 -2.8 575,402 + Echvi_0514 0.70 -1.1 575,402 + Echvi_0514 0.70 -0.1 575,437 + Echvi_0514 0.75 +0.6 575,455 + Echvi_0514 0.77 +1.2 575,477 - Echvi_0514 0.80 +0.3 575,493 + Echvi_0514 0.83 -0.9 575,521 - Echvi_0514 0.86 -2.1 575,580 - +0.3 575,580 - -1.9 575,593 - +0.9 575,616 - +0.3 575,755 + -0.3 575,756 - +1.5 575,765 - +1.5 575,766 + +0.4 575,766 + -0.2 575,766 + +0.5 575,767 - +0.2 575,767 - -0.3 575,775 - -1.2 575,775 - +0.7 575,776 + -0.9 575,776 + +0.4 575,777 - -2.3 575,884 + Echvi_0515 0.11 -1.4 575,884 + Echvi_0515 0.11 +0.9 575,884 + Echvi_0515 0.11 -0.3 575,884 + Echvi_0515 0.11 -0.4 575,884 + Echvi_0515 0.11 +1.9 575,884 + Echvi_0515 0.11 +0.2 575,884 + Echvi_0515 0.11 +0.7 576,317 + Echvi_0515 0.37 +0.1 576,363 + Echvi_0515 0.39 +1.3 576,363 + Echvi_0515 0.39 -0.0 576,364 - Echvi_0515 0.39 -0.6 576,510 + Echvi_0515 0.48 -0.5 576,546 + Echvi_0515 0.50 +0.2 576,671 - Echvi_0515 0.58 +0.5 576,765 - Echvi_0515 0.63 +1.4 576,931 + Echvi_0515 0.73 -0.3 576,931 + Echvi_0515 0.73 +0.2 576,932 - Echvi_0515 0.73 +1.7 576,946 + Echvi_0515 0.74 -0.8 576,955 + Echvi_0515 0.74 +0.8 576,955 + Echvi_0515 0.74 +0.2 577,230 - +0.9 577,329 + +1.5 577,354 + -0.0 577,359 + -0.5 577,428 - +4.0 577,430 + -0.8 577,431 - +5.8 577,486 + -1.2 577,486 + -0.9 577,486 + -0.6 577,486 + -0.3 577,486 + -0.4 577,486 + +2.0 577,487 - +2.7 577,487 - +3.0 577,512 + +0.5 577,512 + -0.5 577,517 + +1.1 577,531 + +0.3 577,534 + -1.0 577,564 + +2.0 577,564 + -0.5 577,564 + -1.4 577,564 + +0.6 577,565 - +3.5 577,565 - +2.0 577,609 + +0.6 577,610 - +4.8 577,706 - Echvi_0516 0.12 +2.6 577,895 + Echvi_0516 0.24 -0.9 577,895 + Echvi_0516 0.24 -0.3 577,899 + Echvi_0516 0.25 -0.9 577,918 - Echvi_0516 0.26 +0.1 578,076 + Echvi_0516 0.36 +0.5 578,119 - Echvi_0516 0.39 +2.6 578,144 + Echvi_0516 0.40 +0.4 578,144 + Echvi_0516 0.40 +1.0 578,144 + Echvi_0516 0.40 +0.6 578,145 - Echvi_0516 0.41 +5.4 578,145 - Echvi_0516 0.41 +3.3 578,274 + Echvi_0516 0.49 +0.2 578,275 - Echvi_0516 0.49 +3.1 578,276 + Echvi_0516 0.49 +0.8 578,276 + Echvi_0516 0.49 -0.7 578,276 + Echvi_0516 0.49 -0.6 578,277 - Echvi_0516 0.49 +3.4 578,277 - Echvi_0516 0.49 +2.8 578,279 + Echvi_0516 0.49 -1.2 578,279 + Echvi_0516 0.49 -0.2 578,279 + Echvi_0516 0.49 +0.4 578,280 - Echvi_0516 0.49 +4.4
Or see this region's nucleotide sequence